Wall clock time and date at job start Tue Mar 31 2020 07:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.20826 * 119.99939 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00046 * 179.97438 * 5 4 2 8 8 C 1.45192 * 117.00018 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47109 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47278 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47248 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00192 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00184 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46836 * 90.00119 * 15 13 11 17 17 H 1.48494 * 109.47390 * 210.00503 * 15 13 11 18 18 H 1.48505 * 109.46717 * 330.00448 * 15 13 11 19 19 C 1.50699 * 109.47110 * 119.99564 * 2 1 3 20 20 C 1.38219 * 120.01090 * 59.72689 * 19 2 1 21 21 C 1.38226 * 120.02156 * 179.71873 * 20 19 2 22 22 C 1.38264 * 120.05545 * 0.55956 * 21 20 19 23 23 C 1.38176 * 120.02230 * 359.71929 * 22 21 20 24 24 C 1.38434 * 120.01506 * 240.00299 * 19 2 1 25 25 F 1.35102 * 120.02608 * 0.02562 * 24 19 2 26 26 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 28 28 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 29 29 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 30 30 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 31 31 H 1.09001 * 109.47630 * 300.00318 * 8 7 5 32 32 H 1.08998 * 109.47321 * 60.00129 * 8 7 5 33 33 H 1.09005 * 109.47066 * 299.99718 * 9 8 7 34 34 H 1.08998 * 109.47698 * 59.99951 * 9 8 7 35 35 H 1.09001 * 109.47487 * 299.99960 * 10 9 8 36 36 H 1.09008 * 109.47307 * 59.99683 * 10 9 8 37 37 H 0.97001 * 120.00432 * 179.97438 * 14 13 11 38 38 H 1.08001 * 119.99062 * 0.02562 * 20 19 2 39 39 H 1.08007 * 119.96977 * 180.27941 * 21 20 19 40 40 H 1.08003 * 119.98960 * 179.74529 * 22 21 20 41 41 H 1.07994 * 120.01400 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0141 1.0835 -2.3637 7 8 1.9840 -0.3897 -3.6951 8 6 1.5669 0.4112 -4.8321 9 6 2.0442 -0.2519 -6.1256 10 6 1.6052 0.5924 -7.3237 11 6 2.0759 -0.0605 -8.5978 12 1 2.6322 -0.9853 -8.5571 13 6 1.7965 0.5229 -9.8154 14 7 2.2068 -0.0470 -10.9273 15 14 0.8337 2.1223 -9.8859 16 1 1.7752 3.2694 -9.8326 17 1 0.0573 2.1774 -11.1504 18 1 -0.0966 2.1912 -8.7304 19 6 2.0324 -0.7103 1.2305 20 6 1.6939 -2.0319 1.4524 21 6 2.1593 -2.6854 2.5780 22 6 2.9542 -2.0147 3.4891 23 6 3.2891 -0.6918 3.2722 24 6 2.8282 -0.0378 2.1419 25 9 3.1546 1.2559 1.9292 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 1.6055 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2055 31 1 0.4796 0.4879 -4.8433 32 1 2.0005 1.4081 -4.7530 33 1 3.1315 -0.3288 -6.1147 34 1 1.6103 -1.2486 -6.2046 35 1 0.5180 0.6698 -7.3349 36 1 2.0396 1.5891 -7.2446 37 1 2.0099 0.3632 -11.7840 38 1 1.0697 -2.5557 0.7436 39 1 1.8981 -3.7194 2.7483 40 1 3.3139 -2.5251 4.3703 41 1 3.9103 -0.1682 3.9837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726844004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:42 Heat of formation + Delta-G solvation = -133.155626 kcal Electronic energy + Delta-G solvation = -22414.935852 eV Core-core repulsion = 18787.515385 eV Total energy + Delta-G solvation = -3627.420468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.21207 -40.56959 -39.52708 -36.92688 -35.32634 -34.08264 -31.87837 -30.96508 -30.36930 -28.64259 -27.27369 -24.45108 -23.25826 -22.84422 -21.36728 -20.38450 -19.89689 -18.19396 -17.49355 -17.02599 -16.75335 -16.51443 -16.09146 -15.97303 -15.69678 -14.78133 -14.56306 -14.24242 -14.14505 -13.86840 -13.46387 -13.44348 -12.85145 -12.74087 -12.72205 -12.46430 -12.28245 -11.93474 -11.90955 -11.55074 -11.24778 -11.09635 -11.03646 -10.95480 -10.50517 -10.36888 -9.99403 -9.79730 -9.72763 -9.37312 -9.25520 -9.04006 -8.57360 -6.07589 -4.06646 0.73998 0.78717 2.26823 2.78660 3.18441 3.29549 3.37124 3.40525 3.87761 4.18440 4.27850 4.42444 4.49606 4.59269 4.70318 4.82509 4.91869 4.92512 5.13237 5.25629 5.29132 5.36250 5.45798 5.47496 5.48715 5.61709 5.64617 5.74137 5.79006 5.86526 5.96703 6.05085 6.08345 6.37015 6.38393 6.48209 6.68143 6.81174 7.20532 7.31774 7.71839 7.87621 8.49162 8.96657 9.53901 11.05532 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035712 B = 0.002327 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.859294 B =12027.212742 C =12268.219076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.043 4.043 3 H 0.094 0.906 4 C -0.107 4.107 5 C 0.458 3.542 6 O -0.509 6.509 7 O -0.357 6.357 8 C 0.066 3.934 9 C -0.102 4.102 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.074 0.926 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.109 4.109 20 C -0.086 4.086 21 C -0.128 4.128 22 C -0.095 4.095 23 C -0.153 4.153 24 C 0.102 3.898 25 F -0.136 7.136 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -4.477 31.217 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.061 4.061 3 H 0.112 0.888 4 C -0.145 4.145 5 C 0.301 3.699 6 O -0.398 6.398 7 O -0.273 6.273 8 C -0.007 4.007 9 C -0.139 4.139 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.092 0.908 13 C -0.135 4.135 14 N -0.540 5.540 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.110 4.110 20 C -0.104 4.104 21 C -0.146 4.146 22 C -0.113 4.113 23 C -0.172 4.172 24 C 0.083 3.917 25 F -0.115 7.115 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.604 -4.090 30.987 31.261 hybrid contribution -0.394 1.189 -0.241 1.276 sum -0.998 -2.901 30.745 30.898 Atomic orbital electron populations 1.21993 0.92979 1.02141 1.03642 1.19897 0.97346 0.99779 0.89097 0.88782 1.21447 1.04100 1.00038 0.88897 1.23515 0.76585 0.84339 0.85417 1.90631 1.37374 1.24513 1.87308 1.86502 1.72139 1.53370 1.15291 1.23490 0.99963 0.94311 0.82962 1.21559 1.01596 1.00293 0.90480 1.19523 0.96660 0.95379 0.93259 1.21053 1.35950 1.10108 0.88834 0.90798 1.25022 0.95402 0.97404 0.95625 1.69907 1.46589 1.39814 0.97700 0.86780 0.80724 0.84162 0.77653 1.20202 1.21275 1.18985 1.19882 0.99141 0.95206 0.96781 1.20970 0.98778 0.93022 0.97606 1.21234 0.98364 1.00485 0.94527 1.21033 0.97368 0.93505 0.99417 1.21163 1.02712 0.96026 0.97306 1.17596 0.98862 0.79176 0.96039 1.91508 1.90931 1.34267 1.94757 0.92605 0.92387 0.90075 0.87464 0.87566 0.91536 0.91543 0.91557 0.91526 0.96293 0.96726 0.92642 0.84822 0.85208 0.85063 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.75 37.16 0.32 -1.12 16 2 C -0.04 -0.42 2.19 -91.77 -0.20 -0.62 16 3 H 0.09 1.09 6.94 -51.93 -0.36 0.73 16 4 C -0.11 -1.04 5.03 -27.88 -0.14 -1.18 16 5 C 0.46 6.41 7.67 36.01 0.28 6.69 16 6 O -0.51 -8.32 13.72 -18.75 -0.26 -8.58 16 7 O -0.36 -5.63 10.22 -39.26 -0.40 -6.04 16 8 C 0.07 1.14 5.47 37.16 0.20 1.35 16 9 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 10 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 11 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 12 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 15 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 19 C -0.11 -0.95 4.79 -104.56 -0.50 -1.45 16 20 C -0.09 -0.59 8.76 -39.59 -0.35 -0.93 16 21 C -0.13 -0.74 10.04 -39.58 -0.40 -1.14 16 22 C -0.10 -0.55 10.04 -39.59 -0.40 -0.95 16 23 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 24 C 0.10 0.95 7.25 -39.42 -0.29 0.67 16 25 F -0.14 -1.49 16.19 2.25 0.04 -1.45 16 26 H 0.05 0.44 7.37 -51.93 -0.38 0.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.96 5.96 -51.93 -0.31 0.65 16 29 H 0.11 0.81 7.59 -51.93 -0.39 0.42 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 32 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.13 0.70 7.16 -52.49 -0.38 0.32 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -32.36 346.14 -7.83 -40.20 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.98 Total: -3.35 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.55 Total: -16.07 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.66 Total: -14.61 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.36 -7.83 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726844004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.959 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds