Wall clock time and date at job start Tue Mar 31 2020 07:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 O 1.20826 * 119.99939 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00046 * 179.97438 * 5 4 2 8 8 C 1.45192 * 117.00018 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47109 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47278 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47248 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99944 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00192 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00184 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46836 * 90.00119 * 15 13 11 17 17 H 1.48494 * 109.47390 * 210.00503 * 15 13 11 18 18 H 1.48505 * 109.46717 * 330.00448 * 15 13 11 19 19 C 1.50699 * 109.47110 * 119.99564 * 2 1 3 20 20 C 1.38219 * 120.01090 * 59.72689 * 19 2 1 21 21 C 1.38226 * 120.02156 * 179.71873 * 20 19 2 22 22 C 1.38264 * 120.05545 * 0.55956 * 21 20 19 23 23 C 1.38176 * 120.02230 * 359.71929 * 22 21 20 24 24 C 1.38434 * 120.01506 * 240.00299 * 19 2 1 25 25 F 1.35102 * 120.02608 * 0.02562 * 24 19 2 26 26 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 28 28 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 29 29 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 30 30 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 31 31 H 1.09001 * 109.47630 * 300.00318 * 8 7 5 32 32 H 1.08998 * 109.47321 * 60.00129 * 8 7 5 33 33 H 1.09005 * 109.47066 * 299.99718 * 9 8 7 34 34 H 1.08998 * 109.47698 * 59.99951 * 9 8 7 35 35 H 1.09001 * 109.47487 * 299.99960 * 10 9 8 36 36 H 1.09008 * 109.47307 * 59.99683 * 10 9 8 37 37 H 0.97001 * 120.00432 * 179.97438 * 14 13 11 38 38 H 1.08001 * 119.99062 * 0.02562 * 20 19 2 39 39 H 1.08007 * 119.96977 * 180.27941 * 21 20 19 40 40 H 1.08003 * 119.98960 * 179.74529 * 22 21 20 41 41 H 1.07994 * 120.01400 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0141 1.0835 -2.3637 7 8 1.9840 -0.3897 -3.6951 8 6 1.5669 0.4112 -4.8321 9 6 2.0442 -0.2519 -6.1256 10 6 1.6052 0.5924 -7.3237 11 6 2.0759 -0.0605 -8.5978 12 1 2.6322 -0.9853 -8.5571 13 6 1.7965 0.5229 -9.8154 14 7 2.2068 -0.0470 -10.9273 15 14 0.8337 2.1223 -9.8859 16 1 1.7752 3.2694 -9.8326 17 1 0.0573 2.1774 -11.1504 18 1 -0.0966 2.1912 -8.7304 19 6 2.0324 -0.7103 1.2305 20 6 1.6939 -2.0319 1.4524 21 6 2.1593 -2.6854 2.5780 22 6 2.9542 -2.0147 3.4891 23 6 3.2891 -0.6918 3.2722 24 6 2.8282 -0.0378 2.1419 25 9 3.1546 1.2559 1.9292 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 1.6055 -1.7198 -1.2951 30 1 3.1264 -0.7994 -1.2055 31 1 0.4796 0.4879 -4.8433 32 1 2.0005 1.4081 -4.7530 33 1 3.1315 -0.3288 -6.1147 34 1 1.6103 -1.2486 -6.2046 35 1 0.5180 0.6698 -7.3349 36 1 2.0396 1.5891 -7.2446 37 1 2.0099 0.3632 -11.7840 38 1 1.0697 -2.5557 0.7436 39 1 1.8981 -3.7194 2.7483 40 1 3.3139 -2.5251 4.3703 41 1 3.9103 -0.1682 3.9837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726844004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:42 Heat of formation + Delta-G solvation = -149.773952 kcal Electronic energy + Delta-G solvation = -22415.656477 eV Core-core repulsion = 18787.515385 eV Total energy + Delta-G solvation = -3628.141092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.92071 -41.67238 -40.15271 -38.08973 -36.16660 -35.92390 -33.88505 -31.47402 -31.05773 -29.79427 -28.73100 -25.34588 -24.61178 -23.54436 -22.35043 -22.06000 -20.83351 -19.06633 -18.92605 -18.37411 -17.84112 -17.58834 -16.99222 -16.64336 -16.45651 -16.27987 -15.98873 -15.11388 -15.05527 -14.85492 -14.68656 -14.46450 -14.12049 -13.99130 -13.81386 -13.64979 -13.18823 -12.99656 -12.81983 -12.63869 -12.57348 -12.30612 -12.10689 -12.04179 -11.84296 -11.77187 -11.74800 -11.42245 -11.35755 -11.24898 -10.78585 -9.88632 -9.60034 -8.31160 -6.36101 0.20172 0.28773 1.16558 1.36032 1.37340 1.49123 1.66902 2.34640 2.67342 3.03818 3.31309 3.42060 3.62152 3.82319 3.96278 3.99574 4.02216 4.03859 4.19613 4.34435 4.38005 4.40035 4.43190 4.59740 4.66228 4.73005 4.73538 4.88107 4.95144 5.02296 5.06831 5.13892 5.23584 5.28624 5.38089 5.46116 5.47647 5.51828 5.56522 5.62876 5.98702 6.24842 6.69643 6.73701 7.28321 8.85294 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.035712 B = 0.002327 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.859294 B =12027.212742 C =12268.219076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 H 0.067 0.933 4 C -0.099 4.099 5 C 0.456 3.544 6 O -0.535 6.535 7 O -0.361 6.361 8 C 0.074 3.926 9 C -0.092 4.092 10 C -0.010 4.010 11 C -0.534 4.534 12 H 0.036 0.964 13 C 0.005 3.995 14 N -0.949 5.949 15 Si 0.950 3.050 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.246 1.246 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.092 4.092 23 C -0.160 4.160 24 C 0.071 3.929 25 F -0.155 7.155 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.026 0.974 36 H 0.023 0.977 37 H 0.267 0.733 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -5.146 33.505 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.057 4.057 3 H 0.085 0.915 4 C -0.136 4.136 5 C 0.301 3.699 6 O -0.425 6.425 7 O -0.277 6.277 8 C 0.001 3.999 9 C -0.130 4.130 10 C -0.047 4.047 11 C -0.571 4.571 12 H 0.054 0.946 13 C -0.192 4.192 14 N -0.589 5.589 15 Si 0.773 3.227 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.170 1.170 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.141 4.141 22 C -0.110 4.110 23 C -0.178 4.178 24 C 0.052 3.948 25 F -0.134 7.134 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.177 0.823 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.398 -4.768 33.305 33.674 hybrid contribution -0.087 1.276 -0.875 1.550 sum -1.485 -3.492 32.430 32.651 Atomic orbital electron populations 1.21944 0.92925 1.03164 1.02353 1.19765 0.97352 0.98622 0.89913 0.91484 1.21583 1.05051 1.00590 0.86380 1.24359 0.75696 0.84274 0.85532 1.90630 1.38619 1.25844 1.87430 1.86495 1.72395 1.53192 1.15650 1.23151 1.00046 0.94035 0.82668 1.21318 1.01295 0.99722 0.90670 1.19454 0.96882 0.95859 0.92530 1.21397 1.35382 1.09122 0.91248 0.94569 1.26009 0.96624 1.01513 0.95104 1.70056 1.48378 1.41963 0.98523 0.85666 0.79518 0.79165 0.78372 1.19169 1.20814 1.16987 1.19806 0.99872 0.96048 0.96234 1.21227 0.98776 0.92157 0.98467 1.21617 0.97215 1.01665 0.93643 1.21415 0.96586 0.92796 1.00226 1.21400 1.02750 0.96869 0.96828 1.17981 1.00493 0.78830 0.97532 1.91453 1.91312 1.35650 1.95013 0.90384 0.92449 0.92513 0.84486 0.86249 0.91111 0.91446 0.91960 0.91693 0.95609 0.95906 0.92384 0.82962 0.82444 0.82341 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.75 71.98 0.63 -2.05 16 2 C -0.04 -0.71 2.19 -11.54 -0.03 -0.74 16 3 H 0.07 1.62 6.94 -2.39 -0.02 1.60 16 4 C -0.10 -1.75 5.03 29.85 0.15 -1.60 16 5 C 0.46 12.30 7.67 71.24 0.55 12.84 16 6 O -0.54 -17.36 13.72 21.97 0.30 -17.06 16 7 O -0.36 -10.94 10.22 -51.41 -0.53 -11.46 16 8 C 0.07 2.50 5.47 71.98 0.39 2.90 16 9 C -0.09 -3.62 5.53 30.59 0.17 -3.45 16 10 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 11 C -0.53 -30.86 9.66 25.60 0.25 -30.62 16 12 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 13 C 0.00 0.27 5.47 84.65 0.46 0.73 16 14 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 15 Si 0.95 44.36 27.47 68.60 1.88 46.25 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 19 C -0.12 -1.90 4.79 -19.82 -0.09 -1.99 16 20 C -0.09 -0.94 8.76 22.26 0.20 -0.75 16 21 C -0.12 -0.97 10.04 22.27 0.22 -0.75 16 22 C -0.09 -0.79 10.04 22.26 0.22 -0.56 16 23 C -0.16 -2.09 10.03 22.31 0.22 -1.86 16 24 C 0.07 1.28 7.25 22.37 0.16 1.45 16 25 F -0.16 -3.55 16.19 44.97 0.73 -2.82 16 26 H 0.08 1.04 7.37 -2.39 -0.02 1.02 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.33 5.96 -2.39 -0.01 1.31 16 29 H 0.14 1.63 7.59 -2.39 -0.02 1.61 16 30 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 32 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 33 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 36 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.15 0.98 7.16 -2.91 -0.02 0.96 16 39 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -71.71 346.14 7.28 -64.43 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.96 Total: 6.83 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.63 Total: -26.80 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.30 Total: -59.36 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.22 Total: -28.52 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.73 Total: -2.82 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -71.71 7.28 -64.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726844004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.340 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds