Wall clock time and date at job start Tue Mar 31 2020 07:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47063 * 240.00410 * 2 1 3 5 5 C 1.50709 * 109.47142 * 64.99465 * 4 2 1 6 6 O 1.20821 * 119.99644 * 0.02562 * 5 4 2 7 7 O 1.34231 * 119.99780 * 180.02562 * 5 4 2 8 8 C 1.45203 * 116.99335 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46749 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47327 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47154 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00070 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99715 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00128 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00028 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46772 * 89.99652 * 15 13 11 17 17 H 1.48497 * 109.47493 * 209.99952 * 15 13 11 18 18 H 1.48508 * 109.46964 * 330.00240 * 15 13 11 19 19 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 20 20 C 1.38248 * 119.97128 * 239.99664 * 19 2 1 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 2 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38197 * 119.97511 * 359.47283 * 24 22 21 26 26 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 27 27 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 29 29 H 1.08998 * 109.47740 * 184.99766 * 4 2 1 30 30 H 1.08999 * 109.47080 * 305.00066 * 4 2 1 31 31 H 1.09000 * 109.46860 * 299.99708 * 8 7 5 32 32 H 1.08999 * 109.47158 * 60.00295 * 8 7 5 33 33 H 1.09004 * 109.46608 * 299.99734 * 9 8 7 34 34 H 1.09001 * 109.47554 * 59.99285 * 9 8 7 35 35 H 1.08996 * 109.46722 * 300.00009 * 10 9 8 36 36 H 1.08999 * 109.46841 * 59.99751 * 10 9 8 37 37 H 0.96999 * 120.00371 * 179.97438 * 14 13 11 38 38 H 1.08001 * 119.98881 * 0.02562 * 20 19 2 39 39 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 41 41 H 1.07994 * 119.98821 * 180.29814 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0572 -2.4767 6 8 1.0138 1.0836 -2.3636 7 8 1.9828 -0.3899 -3.6953 8 6 1.5656 0.4112 -4.8322 9 6 2.0418 -0.2525 -6.1259 10 6 1.6017 0.5913 -7.3240 11 6 2.0713 -0.0621 -8.5982 12 1 2.6283 -0.9864 -8.5575 13 6 1.7907 0.5208 -9.8157 14 7 1.1128 1.6466 -9.8651 15 14 2.3734 -0.2887 -11.3952 16 1 1.3312 -1.2267 -11.8842 17 1 2.6228 0.7537 -12.4230 18 1 3.6294 -1.0367 -11.1339 19 6 2.0323 -0.7105 1.2303 20 6 2.8272 -0.0381 2.1400 21 6 3.2881 -0.6885 3.2689 22 6 2.9540 -2.0141 3.4885 23 9 3.4044 -2.6510 4.5915 24 6 2.1625 -2.6881 2.5739 25 6 1.6980 -2.0340 1.4486 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1262 -0.7994 -1.2058 30 1 1.6053 -1.7197 -1.2953 31 1 0.4784 0.4885 -4.8427 32 1 2.0000 1.4078 -4.7534 33 1 3.1290 -0.3301 -6.1155 34 1 1.6072 -1.2490 -6.2045 35 1 0.5145 0.6685 -7.3341 36 1 2.0361 1.5879 -7.2456 37 1 0.9157 2.0569 -10.7217 38 1 3.0874 0.9960 1.9687 39 1 3.9087 -0.1630 3.9796 40 1 1.9045 -3.7233 2.7421 41 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733521282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:48 Heat of formation + Delta-G solvation = -138.671625 kcal Electronic energy + Delta-G solvation = -22023.569769 eV Core-core repulsion = 18395.910110 eV Total energy + Delta-G solvation = -3627.659659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.23122 -40.57455 -39.58271 -36.80784 -35.09141 -34.00609 -31.75016 -31.55664 -29.96141 -28.46082 -26.86617 -24.16825 -23.49932 -23.08537 -21.33177 -20.42177 -19.93810 -18.12909 -17.59528 -16.93102 -16.49851 -16.40101 -15.93973 -15.87844 -15.54169 -14.76338 -14.56023 -14.47579 -14.02818 -13.86797 -13.71735 -13.34365 -13.16094 -12.65520 -12.47309 -12.17700 -12.03389 -11.88681 -11.62551 -11.48268 -11.39553 -11.03546 -10.97631 -10.66157 -10.64533 -10.39911 -10.25319 -9.73889 -9.51779 -9.50810 -9.18021 -8.93500 -8.40278 -6.04973 -4.08073 0.72569 0.82963 2.31512 2.84278 3.19678 3.29946 3.36203 3.39700 3.88623 4.24595 4.29518 4.42714 4.50302 4.54106 4.71011 4.86359 4.93886 5.00053 5.17564 5.30961 5.32681 5.39799 5.50856 5.56274 5.57860 5.60976 5.71515 5.72914 5.79523 5.87136 5.99653 6.09863 6.19435 6.48397 6.52051 6.52295 6.84427 6.97182 7.58517 7.69427 7.91408 7.93614 8.34413 8.98189 9.56278 11.06419 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.039424 B = 0.002039 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.050901 B =13728.628725 C =14085.883233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 H 0.092 0.908 4 C -0.110 4.110 5 C 0.457 3.543 6 O -0.510 6.510 7 O -0.359 6.359 8 C 0.068 3.932 9 C -0.109 4.109 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.085 4.085 20 C -0.085 4.085 21 C -0.152 4.152 22 C 0.092 3.908 23 F -0.142 7.142 24 C -0.151 4.151 25 C -0.084 4.084 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 -6.263 27.132 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.058 4.058 3 H 0.110 0.890 4 C -0.147 4.147 5 C 0.300 3.700 6 O -0.399 6.399 7 O -0.276 6.276 8 C -0.005 4.005 9 C -0.147 4.147 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.085 4.085 20 C -0.103 4.103 21 C -0.170 4.170 22 C 0.072 3.928 23 F -0.121 7.121 24 C -0.170 4.170 25 C -0.102 4.102 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.753 -5.841 27.032 27.711 hybrid contribution 0.319 -0.381 -0.722 0.876 sum 2.072 -6.221 26.310 27.115 Atomic orbital electron populations 1.22014 0.93254 1.02133 1.03634 1.19956 0.97130 0.99403 0.89276 0.89008 1.21481 1.04090 1.00088 0.89070 1.23526 0.76624 0.84349 0.85484 1.90630 1.37344 1.24568 1.87340 1.86504 1.72165 1.53503 1.15384 1.23497 1.00000 0.94253 0.82705 1.21767 1.01052 1.00405 0.91475 1.19052 0.96953 0.94930 0.90404 1.21170 1.35399 1.08579 0.90830 0.92429 1.25036 0.95183 0.94967 0.99335 1.69962 1.39701 1.18088 1.25589 0.86541 0.79144 0.79039 0.82965 1.20612 1.21193 1.19813 1.19910 0.97822 0.94251 0.96507 1.20989 0.96170 1.00229 0.92872 1.21154 1.02826 0.93364 0.99702 1.17761 0.98559 0.91493 0.84947 1.91502 1.87536 1.81987 1.51056 1.21162 0.99720 1.01113 0.94977 1.20927 0.98685 0.94029 0.96603 0.90118 0.92732 0.92336 0.87557 0.87636 0.91528 0.91525 0.92163 0.92167 0.96246 0.96241 0.92886 0.84788 0.84723 0.84683 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.75 37.15 0.32 -1.04 16 2 C -0.04 -0.33 2.21 -91.78 -0.20 -0.53 16 3 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 4 C -0.11 -0.99 5.03 -27.88 -0.14 -1.13 16 5 C 0.46 6.25 7.67 36.01 0.28 6.53 16 6 O -0.51 -8.18 13.72 -18.75 -0.26 -8.44 16 7 O -0.36 -5.71 10.22 -39.26 -0.40 -6.12 16 8 C 0.07 1.23 5.47 37.16 0.20 1.43 16 9 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.08 -0.64 4.78 -104.62 -0.50 -1.14 16 20 C -0.08 -0.60 9.67 -39.59 -0.38 -0.99 16 21 C -0.15 -1.12 10.03 -39.52 -0.40 -1.51 16 22 C 0.09 0.76 7.30 -39.42 -0.29 0.48 16 23 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 24 C -0.15 -1.11 10.03 -39.51 -0.40 -1.50 16 25 C -0.08 -0.59 8.76 -39.59 -0.35 -0.94 16 26 H 0.08 0.91 5.96 -51.93 -0.31 0.61 16 27 H 0.05 0.41 7.39 -51.93 -0.38 0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.11 0.78 7.57 -51.93 -0.39 0.38 16 31 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 32 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 0.75 7.94 -52.49 -0.42 0.33 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.13 0.73 7.16 -52.49 -0.38 0.35 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -31.37 351.10 -8.21 -39.57 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.05 Total: -3.82 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.55 Total: -15.68 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.66 Total: -14.55 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.37 -8.21 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733521282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.099 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds