Wall clock time and date at job start Tue Mar 31 2020 07:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47063 * 240.00410 * 2 1 3 5 5 C 1.50709 * 109.47142 * 64.99465 * 4 2 1 6 6 O 1.20821 * 119.99644 * 0.02562 * 5 4 2 7 7 O 1.34231 * 119.99780 * 180.02562 * 5 4 2 8 8 C 1.45203 * 116.99335 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46749 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47327 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47154 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00070 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99715 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00128 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00028 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46772 * 89.99652 * 15 13 11 17 17 H 1.48497 * 109.47493 * 209.99952 * 15 13 11 18 18 H 1.48508 * 109.46964 * 330.00240 * 15 13 11 19 19 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 20 20 C 1.38248 * 119.97128 * 239.99664 * 19 2 1 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 2 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38197 * 119.97511 * 359.47283 * 24 22 21 26 26 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 27 27 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 29 29 H 1.08998 * 109.47740 * 184.99766 * 4 2 1 30 30 H 1.08999 * 109.47080 * 305.00066 * 4 2 1 31 31 H 1.09000 * 109.46860 * 299.99708 * 8 7 5 32 32 H 1.08999 * 109.47158 * 60.00295 * 8 7 5 33 33 H 1.09004 * 109.46608 * 299.99734 * 9 8 7 34 34 H 1.09001 * 109.47554 * 59.99285 * 9 8 7 35 35 H 1.08996 * 109.46722 * 300.00009 * 10 9 8 36 36 H 1.08999 * 109.46841 * 59.99751 * 10 9 8 37 37 H 0.96999 * 120.00371 * 179.97438 * 14 13 11 38 38 H 1.08001 * 119.98881 * 0.02562 * 20 19 2 39 39 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 41 41 H 1.07994 * 119.98821 * 180.29814 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0572 -2.4767 6 8 1.0138 1.0836 -2.3636 7 8 1.9828 -0.3899 -3.6953 8 6 1.5656 0.4112 -4.8322 9 6 2.0418 -0.2525 -6.1259 10 6 1.6017 0.5913 -7.3240 11 6 2.0713 -0.0621 -8.5982 12 1 2.6283 -0.9864 -8.5575 13 6 1.7907 0.5208 -9.8157 14 7 1.1128 1.6466 -9.8651 15 14 2.3734 -0.2887 -11.3952 16 1 1.3312 -1.2267 -11.8842 17 1 2.6228 0.7537 -12.4230 18 1 3.6294 -1.0367 -11.1339 19 6 2.0323 -0.7105 1.2303 20 6 2.8272 -0.0381 2.1400 21 6 3.2881 -0.6885 3.2689 22 6 2.9540 -2.0141 3.4885 23 9 3.4044 -2.6510 4.5915 24 6 2.1625 -2.6881 2.5739 25 6 1.6980 -2.0340 1.4486 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.1262 -0.7994 -1.2058 30 1 1.6053 -1.7197 -1.2953 31 1 0.4784 0.4885 -4.8427 32 1 2.0000 1.4078 -4.7534 33 1 3.1290 -0.3301 -6.1155 34 1 1.6072 -1.2490 -6.2045 35 1 0.5145 0.6685 -7.3341 36 1 2.0361 1.5879 -7.2456 37 1 0.9157 2.0569 -10.7217 38 1 3.0874 0.9960 1.9687 39 1 3.9087 -0.1630 3.9796 40 1 1.9045 -3.7233 2.7421 41 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733521282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:47 Heat of formation + Delta-G solvation = -153.375431 kcal Electronic energy + Delta-G solvation = -22024.207374 eV Core-core repulsion = 18395.910110 eV Total energy + Delta-G solvation = -3628.297264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.87129 -41.63965 -40.26945 -38.00682 -35.96635 -35.84622 -33.68172 -32.07824 -30.69871 -29.44739 -28.47805 -25.38688 -24.52616 -23.90187 -22.29820 -22.14904 -20.81395 -18.89831 -18.62373 -18.40542 -17.80556 -17.51512 -16.91406 -16.57104 -16.49162 -16.25889 -15.92036 -15.23597 -14.97889 -14.66090 -14.40619 -14.33150 -14.14702 -14.00890 -13.81050 -13.66414 -13.14477 -13.08020 -12.80997 -12.50320 -12.38166 -12.22668 -12.20548 -12.13533 -11.99390 -11.68022 -11.63118 -11.37539 -11.32025 -11.13518 -10.57161 -10.03088 -9.52662 -8.21615 -6.33098 0.14709 0.31096 1.22686 1.41831 1.43255 1.54376 1.72300 2.41658 2.62857 3.12200 3.32504 3.51805 3.66402 3.88832 3.98254 4.01331 4.04415 4.08797 4.09276 4.36721 4.42614 4.44097 4.46391 4.67459 4.75125 4.81380 4.86619 4.97635 5.01298 5.08673 5.10204 5.16676 5.20727 5.29524 5.36328 5.47001 5.58683 5.64415 5.65972 5.80568 5.95020 6.19581 6.76560 6.83375 7.36404 8.90475 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.039424 B = 0.002039 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.050901 B =13728.628725 C =14085.883233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 H 0.083 0.917 4 C -0.101 4.101 5 C 0.454 3.546 6 O -0.536 6.536 7 O -0.361 6.361 8 C 0.079 3.921 9 C -0.095 4.095 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.065 0.935 13 C -0.003 4.003 14 N -0.933 5.933 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.086 4.086 20 C -0.088 4.088 21 C -0.156 4.156 22 C 0.072 3.928 23 F -0.152 7.152 24 C -0.154 4.154 25 C -0.084 4.084 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H -0.003 1.003 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -7.925 27.654 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.051 4.051 3 H 0.102 0.898 4 C -0.139 4.139 5 C 0.299 3.701 6 O -0.426 6.426 7 O -0.278 6.278 8 C 0.005 3.995 9 C -0.132 4.132 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.200 4.200 14 N -0.573 5.573 15 Si 0.793 3.207 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.186 1.186 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.174 4.174 22 C 0.053 3.947 23 F -0.131 7.131 24 C -0.173 4.173 25 C -0.102 4.102 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.525 -7.515 27.579 28.695 hybrid contribution 0.053 0.170 -0.797 0.817 sum 2.578 -7.345 26.781 27.890 Atomic orbital electron populations 1.21981 0.93712 1.02784 1.02448 1.19856 0.96683 0.99116 0.89440 0.89826 1.21646 1.05398 1.00357 0.86450 1.24499 0.75682 0.84332 0.85573 1.90634 1.38556 1.25997 1.87434 1.86494 1.72429 1.53135 1.15715 1.23074 0.99514 0.93907 0.82995 1.21455 1.01281 0.99711 0.90773 1.18939 0.95293 0.94623 0.92355 1.21627 1.35440 1.08984 0.92003 0.91667 1.26021 0.95200 0.95518 1.03295 1.70097 1.40930 1.19659 1.26653 0.85385 0.79084 0.78079 0.78124 1.19719 1.20867 1.18551 1.19832 0.98166 0.94524 0.96117 1.21173 0.95908 1.00905 0.92632 1.21330 1.02878 0.93193 1.00048 1.18052 0.99424 0.92102 0.85130 1.91475 1.87783 1.82217 1.51638 1.21363 0.99279 1.01851 0.94762 1.21126 0.98519 0.93811 0.96742 0.92824 0.91187 0.91944 0.85634 0.85173 0.92002 0.92083 0.91564 0.91473 0.98511 0.98552 0.92699 0.83521 0.83551 0.83323 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.75 71.98 0.63 -1.86 16 2 C -0.03 -0.48 2.21 -11.54 -0.03 -0.51 16 3 H 0.08 1.39 7.69 -2.39 -0.02 1.38 16 4 C -0.10 -1.57 5.03 29.85 0.15 -1.42 16 5 C 0.45 11.86 7.67 71.24 0.55 12.40 16 6 O -0.54 -17.09 13.72 21.98 0.30 -16.79 16 7 O -0.36 -11.03 10.22 -51.43 -0.53 -11.56 16 8 C 0.08 2.83 5.47 71.98 0.39 3.23 16 9 C -0.09 -3.86 5.53 30.60 0.17 -3.69 16 10 C 0.03 1.31 4.97 29.85 0.15 1.46 16 11 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 12 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 13 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 14 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 15 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 C -0.09 -1.09 4.78 -19.86 -0.09 -1.19 16 20 C -0.09 -1.09 9.67 22.26 0.22 -0.87 16 21 C -0.16 -2.06 10.03 22.31 0.22 -1.83 16 22 C 0.07 1.10 7.30 22.38 0.16 1.27 16 23 F -0.15 -2.72 17.27 44.97 0.78 -1.95 16 24 C -0.15 -1.94 10.03 22.31 0.22 -1.71 16 25 C -0.08 -0.94 8.76 22.26 0.19 -0.75 16 26 H 0.05 1.19 5.96 -2.39 -0.01 1.18 16 27 H 0.07 0.90 7.39 -2.39 -0.02 0.88 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.13 1.44 7.57 -2.39 -0.02 1.42 16 31 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 32 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 33 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 38 H 0.15 1.36 7.94 -2.91 -0.02 1.34 16 39 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.15 1.10 7.16 -2.91 -0.02 1.08 16 Total: -1.00 -67.76 351.10 7.51 -60.25 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.01 Total: 6.01 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 3.63 Total: -25.44 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.28 Total: -56.29 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.22 Total: -28.35 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -67.76 7.51 -60.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733521282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.128 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds