Wall clock time and date at job start Tue Mar 31 2020 07:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46554 * 2 1 4 4 C 1.53003 * 109.47200 * 240.00454 * 2 1 3 5 5 C 1.50708 * 109.47186 * 64.99659 * 4 2 1 6 6 C 1.38214 * 120.00753 * 100.00133 * 5 4 2 7 7 C 1.38224 * 120.02197 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.05408 * 359.97438 * 7 6 5 9 9 C 1.38183 * 120.02323 * 359.97438 * 8 7 6 10 10 C 1.38437 * 120.01160 * 280.27658 * 5 4 2 11 11 F 1.35099 * 120.02745 * 0.02562 * 10 5 4 12 12 C 1.50698 * 109.47034 * 120.00238 * 2 1 3 13 13 O 1.20826 * 119.99926 * 120.00314 * 12 2 1 14 14 O 1.34221 * 119.99973 * 299.99756 * 12 2 1 15 15 C 1.45204 * 116.99940 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47427 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47553 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47006 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00493 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99847 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46820 * 89.99928 * 22 20 18 24 24 H 1.48499 * 109.47192 * 210.00028 * 22 20 18 25 25 H 1.48493 * 109.46877 * 330.00349 * 22 20 18 26 26 H 1.09002 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47141 * 299.99912 * 1 2 3 28 28 H 1.09001 * 109.47119 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.46927 * 305.00018 * 4 2 1 30 30 H 1.08998 * 109.47211 * 185.00139 * 4 2 1 31 31 H 1.08000 * 119.99561 * 359.97438 * 6 5 4 32 32 H 1.08004 * 119.97833 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.98941 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.01017 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47592 * 300.00660 * 15 14 12 36 36 H 1.09002 * 109.46431 * 60.00745 * 15 14 12 37 37 H 1.09004 * 109.47533 * 300.00900 * 16 15 14 38 38 H 1.09003 * 109.47093 * 60.00099 * 16 15 14 39 39 H 1.09001 * 109.46861 * 300.00080 * 17 16 15 40 40 H 1.09002 * 109.46645 * 60.00382 * 17 16 15 41 41 H 0.97001 * 120.00075 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4767 6 6 2.5585 0.8818 -3.1004 7 6 2.1929 1.5963 -4.2258 8 6 0.9098 1.4866 -4.7292 9 6 -0.0085 0.6619 -4.1078 10 6 0.3546 -0.0491 -2.9763 11 9 -0.5444 -0.8502 -2.3638 12 6 2.0323 -0.7105 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 6 1.7549 -0.3201 4.8834 17 6 2.3019 -1.0937 6.0846 18 6 1.8365 -0.4375 7.3589 19 1 1.2126 0.4430 7.3163 20 6 2.2064 -0.9619 8.5793 21 7 2.9658 -2.0344 8.6312 22 14 1.6301 -0.1482 10.1589 23 1 0.3341 -0.7408 10.5767 24 1 2.6406 -0.3660 11.2251 25 1 1.4575 1.3088 9.9306 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7197 -1.2953 30 1 3.1264 -0.7994 -1.2057 31 1 3.5609 0.9687 -2.7080 32 1 2.9103 2.2401 -4.7130 33 1 0.6255 2.0450 -5.6088 34 1 -1.0105 0.5761 -4.5014 35 1 1.8627 -2.0133 3.5564 36 1 3.3163 -0.9861 3.5567 37 1 2.1186 0.7070 4.9168 38 1 0.6653 -0.3207 4.9159 39 1 1.9384 -2.1208 6.0514 40 1 3.3914 -1.0926 6.0519 41 1 3.2257 -2.4036 9.4897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738765626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:06 Heat of formation + Delta-G solvation = -133.359868 kcal Electronic energy + Delta-G solvation = -22550.408541 eV Core-core repulsion = 18922.979217 eV Total energy + Delta-G solvation = -3627.429324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.28061 -40.45966 -39.41962 -36.70995 -35.27363 -33.97603 -31.83648 -31.39631 -30.74848 -27.21106 -27.00296 -24.66694 -23.21317 -22.92076 -21.70046 -20.39703 -19.84492 -18.02454 -17.44599 -16.80673 -16.76642 -16.32934 -16.15449 -16.00151 -15.64566 -14.65848 -14.53200 -14.46978 -13.77489 -13.66620 -13.53010 -13.29511 -12.97995 -12.62151 -12.30432 -12.14602 -12.07717 -11.96583 -11.78370 -11.43866 -11.26180 -11.25338 -10.96569 -10.64754 -10.61388 -10.36643 -10.23661 -9.71178 -9.50514 -9.35095 -9.15964 -9.00467 -8.38463 -6.03191 -4.06198 0.74887 0.80548 2.35400 2.85685 3.21688 3.31299 3.37377 3.41019 3.90420 4.27461 4.35002 4.44026 4.53889 4.55820 4.69555 4.86057 4.88961 4.95662 5.17745 5.32697 5.36951 5.43680 5.58666 5.59312 5.60875 5.65082 5.68362 5.77773 5.86711 5.95635 6.00712 6.03423 6.08742 6.49834 6.53113 6.54969 6.86244 6.99564 7.60681 7.71785 7.94156 7.95861 8.36414 9.00063 9.58001 11.08254 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.039430 B = 0.002261 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.949689 B =12381.363108 C =12500.843428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.109 0.891 4 C -0.067 4.067 5 C -0.112 4.112 6 C -0.087 4.087 7 C -0.129 4.129 8 C -0.096 4.096 9 C -0.154 4.154 10 C 0.103 3.897 11 F -0.133 7.133 12 C 0.462 3.538 13 O -0.513 6.513 14 O -0.355 6.355 15 C 0.067 3.933 16 C -0.109 4.109 17 C 0.024 3.976 18 C -0.521 4.521 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 7.341 -28.759 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.127 0.873 4 C -0.104 4.104 5 C -0.113 4.113 6 C -0.105 4.105 7 C -0.147 4.147 8 C -0.114 4.114 9 C -0.173 4.173 10 C 0.084 3.916 11 F -0.111 7.111 12 C 0.305 3.695 13 O -0.401 6.401 14 O -0.272 6.272 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.013 4.013 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.564 6.883 -28.582 29.614 hybrid contribution -0.312 0.076 1.066 1.113 sum -3.876 6.959 -27.516 28.645 Atomic orbital electron populations 1.22053 0.91761 1.03424 1.03481 1.20988 0.98651 1.00788 0.89273 0.87332 1.20445 1.02795 0.98458 0.88744 1.19909 0.92639 1.00218 0.98567 1.21041 0.99390 0.94901 0.95146 1.21232 0.96663 1.00087 0.96703 1.21033 0.93109 0.97602 0.99630 1.21180 1.01438 0.98896 0.95762 1.17551 0.87072 0.93420 0.93545 1.91520 1.66505 1.71250 1.81825 1.23498 0.77550 0.82963 0.85519 1.90653 1.35863 1.26008 1.87601 1.86493 1.69555 1.56064 1.15053 1.23506 0.98813 0.95580 0.82645 1.21760 1.01140 1.00307 0.91423 1.19054 0.96523 0.95399 0.90363 1.21172 1.31622 1.12453 0.90677 0.92430 1.25040 0.95111 0.95045 0.99339 1.69967 1.36132 1.21818 1.25453 0.86538 0.78418 0.79802 0.82921 1.20610 1.21197 1.19815 0.91620 0.90993 0.91029 0.89539 0.89213 0.84815 0.85259 0.85090 0.84725 0.91548 0.91549 0.92167 0.92150 0.96248 0.96241 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.62 37.16 0.28 -1.32 16 2 C -0.08 -0.87 2.82 -91.77 -0.26 -1.13 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.07 -0.69 4.06 -27.88 -0.11 -0.80 16 5 C -0.11 -0.99 4.99 -104.55 -0.52 -1.52 16 6 C -0.09 -0.62 9.67 -39.60 -0.38 -1.00 16 7 C -0.13 -0.77 10.04 -39.58 -0.40 -1.17 16 8 C -0.10 -0.56 10.04 -39.59 -0.40 -0.96 16 9 C -0.15 -1.11 10.03 -39.51 -0.40 -1.50 16 10 C 0.10 0.93 5.86 -39.42 -0.23 0.70 16 11 F -0.13 -1.36 13.68 2.25 0.03 -1.33 16 12 C 0.46 7.10 7.25 36.00 0.26 7.36 16 13 O -0.51 -9.18 15.67 -18.75 -0.29 -9.47 16 14 O -0.36 -6.05 10.12 -39.23 -0.40 -6.45 16 15 C 0.07 1.27 5.47 37.16 0.20 1.48 16 16 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.06 0.74 7.74 -51.93 -0.40 0.34 16 27 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 28 H 0.07 0.69 5.16 -51.93 -0.27 0.42 16 29 H 0.09 0.97 7.96 -51.93 -0.41 0.56 16 30 H 0.09 0.90 7.82 -51.93 -0.41 0.49 16 31 H 0.13 0.76 8.04 -52.49 -0.42 0.33 16 32 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 33 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 36 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -32.03 348.57 -8.44 -40.47 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.10 Total: -3.47 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.65 Total: -15.40 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.69 Total: -15.92 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.03 Total: -1.33 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.03 -8.44 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738765626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.890 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds