Wall clock time and date at job start Tue Mar 31 2020 07:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46554 * 2 1 4 4 C 1.53003 * 109.47200 * 240.00454 * 2 1 3 5 5 C 1.50708 * 109.47186 * 64.99659 * 4 2 1 6 6 C 1.38214 * 120.00753 * 100.00133 * 5 4 2 7 7 C 1.38224 * 120.02197 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.05408 * 359.97438 * 7 6 5 9 9 C 1.38183 * 120.02323 * 359.97438 * 8 7 6 10 10 C 1.38437 * 120.01160 * 280.27658 * 5 4 2 11 11 F 1.35099 * 120.02745 * 0.02562 * 10 5 4 12 12 C 1.50698 * 109.47034 * 120.00238 * 2 1 3 13 13 O 1.20826 * 119.99926 * 120.00314 * 12 2 1 14 14 O 1.34221 * 119.99973 * 299.99756 * 12 2 1 15 15 C 1.45204 * 116.99940 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47427 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47553 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47006 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00493 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99847 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46820 * 89.99928 * 22 20 18 24 24 H 1.48499 * 109.47192 * 210.00028 * 22 20 18 25 25 H 1.48493 * 109.46877 * 330.00349 * 22 20 18 26 26 H 1.09002 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47141 * 299.99912 * 1 2 3 28 28 H 1.09001 * 109.47119 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.46927 * 305.00018 * 4 2 1 30 30 H 1.08998 * 109.47211 * 185.00139 * 4 2 1 31 31 H 1.08000 * 119.99561 * 359.97438 * 6 5 4 32 32 H 1.08004 * 119.97833 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.98941 * 180.02562 * 8 7 6 34 34 H 1.08002 * 120.01017 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47592 * 300.00660 * 15 14 12 36 36 H 1.09002 * 109.46431 * 60.00745 * 15 14 12 37 37 H 1.09004 * 109.47533 * 300.00900 * 16 15 14 38 38 H 1.09003 * 109.47093 * 60.00099 * 16 15 14 39 39 H 1.09001 * 109.46861 * 300.00080 * 17 16 15 40 40 H 1.09002 * 109.46645 * 60.00382 * 17 16 15 41 41 H 0.97001 * 120.00075 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4767 6 6 2.5585 0.8818 -3.1004 7 6 2.1929 1.5963 -4.2258 8 6 0.9098 1.4866 -4.7292 9 6 -0.0085 0.6619 -4.1078 10 6 0.3546 -0.0491 -2.9763 11 9 -0.5444 -0.8502 -2.3638 12 6 2.0323 -0.7105 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 6 1.7549 -0.3201 4.8834 17 6 2.3019 -1.0937 6.0846 18 6 1.8365 -0.4375 7.3589 19 1 1.2126 0.4430 7.3163 20 6 2.2064 -0.9619 8.5793 21 7 2.9658 -2.0344 8.6312 22 14 1.6301 -0.1482 10.1589 23 1 0.3341 -0.7408 10.5767 24 1 2.6406 -0.3660 11.2251 25 1 1.4575 1.3088 9.9306 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7197 -1.2953 30 1 3.1264 -0.7994 -1.2057 31 1 3.5609 0.9687 -2.7080 32 1 2.9103 2.2401 -4.7130 33 1 0.6255 2.0450 -5.6088 34 1 -1.0105 0.5761 -4.5014 35 1 1.8627 -2.0133 3.5564 36 1 3.3163 -0.9861 3.5567 37 1 2.1186 0.7070 4.9168 38 1 0.6653 -0.3207 4.9159 39 1 1.9384 -2.1208 6.0514 40 1 3.3914 -1.0926 6.0519 41 1 3.2257 -2.4036 9.4897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738765626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:06 Heat of formation + Delta-G solvation = -148.789524 kcal Electronic energy + Delta-G solvation = -22551.077621 eV Core-core repulsion = 18922.979217 eV Total energy + Delta-G solvation = -3628.098404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.96391 -41.72239 -40.03717 -38.05126 -36.21729 -35.94544 -33.70276 -32.18204 -31.30833 -29.06689 -27.79594 -26.00302 -24.64004 -23.60611 -22.54389 -22.18673 -20.96936 -18.94701 -18.58647 -18.31250 -17.84555 -17.47643 -17.34554 -16.77841 -16.49962 -16.44643 -15.91082 -15.10893 -14.92564 -14.83928 -14.40751 -14.18936 -14.05588 -13.84599 -13.75530 -13.65915 -13.22086 -13.05635 -12.83499 -12.63130 -12.52007 -12.40945 -12.18135 -12.11831 -12.06922 -11.87496 -11.73259 -11.43123 -11.36908 -11.19486 -10.58431 -9.89323 -9.58145 -8.22732 -6.34438 0.19399 0.29054 1.09449 1.40837 1.42611 1.53538 1.61634 2.40720 2.67273 3.11015 3.33099 3.40421 3.69109 3.70914 3.91130 3.93170 3.98109 4.03936 4.15838 4.22210 4.37406 4.39300 4.44824 4.63931 4.72994 4.75715 4.77633 4.86285 4.95445 5.04185 5.06671 5.15335 5.19138 5.26743 5.40557 5.44961 5.50425 5.52283 5.61861 5.78727 5.99090 6.17795 6.64026 6.81422 7.35060 8.89512 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.039430 B = 0.002261 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.949689 B =12381.363108 C =12500.843428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 H 0.132 0.868 4 C -0.061 4.061 5 C -0.126 4.126 6 C -0.092 4.092 7 C -0.126 4.126 8 C -0.091 4.091 9 C -0.159 4.159 10 C 0.080 3.920 11 F -0.147 7.147 12 C 0.460 3.540 13 O -0.540 6.540 14 O -0.355 6.355 15 C 0.077 3.923 16 C -0.093 4.093 17 C 0.026 3.974 18 C -0.543 4.543 19 H 0.065 0.935 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.261 1.261 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.066 0.934 39 H -0.005 1.005 40 H -0.003 1.003 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 9.676 -30.121 31.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 H 0.150 0.850 4 C -0.099 4.099 5 C -0.127 4.127 6 C -0.110 4.110 7 C -0.144 4.144 8 C -0.109 4.109 9 C -0.178 4.178 10 C 0.061 3.939 11 F -0.125 7.125 12 C 0.305 3.695 13 O -0.430 6.430 14 O -0.271 6.271 15 C 0.003 3.997 16 C -0.131 4.131 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.084 0.916 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.185 1.185 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.165 0.835 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.148 9.230 -29.967 31.630 hybrid contribution -0.108 -0.653 1.364 1.517 sum -4.255 8.577 -28.603 30.163 Atomic orbital electron populations 1.22024 0.91189 1.02936 1.04058 1.21121 0.98927 1.01446 0.87282 0.85010 1.20339 1.02540 0.97817 0.89173 1.19821 0.93174 1.01216 0.98458 1.21272 0.99662 0.94536 0.95523 1.21589 0.97251 0.99561 0.95962 1.21422 0.92718 0.96774 1.00007 1.21433 1.02520 0.98688 0.95152 1.17839 0.87134 0.94312 0.94657 1.91480 1.66971 1.71846 1.82243 1.24399 0.76716 0.82683 0.85699 1.90643 1.37247 1.27394 1.87759 1.86486 1.69585 1.55774 1.15273 1.23141 0.98537 0.95129 0.82889 1.21454 1.01172 0.99903 0.90556 1.18937 0.95152 0.94767 0.92302 1.21616 1.31783 1.12865 0.91806 0.91647 1.26037 0.95074 0.95592 1.03349 1.70103 1.37352 1.23365 1.26567 0.85366 0.78024 0.79196 0.77978 1.19735 1.20775 1.18500 0.92714 0.91070 0.89667 0.91327 0.89246 0.83535 0.82648 0.82292 0.83454 0.92181 0.91824 0.91358 0.91539 0.98616 0.98449 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 7.62 71.98 0.55 -2.46 16 2 C -0.07 -1.50 2.82 -11.54 -0.03 -1.53 16 3 H 0.13 2.28 8.14 -2.38 -0.02 2.26 16 4 C -0.06 -1.24 4.06 29.85 0.12 -1.12 16 5 C -0.13 -2.10 4.99 -19.82 -0.10 -2.20 16 6 C -0.09 -1.12 9.67 22.26 0.22 -0.91 16 7 C -0.13 -1.10 10.04 22.27 0.22 -0.88 16 8 C -0.09 -0.79 10.04 22.26 0.22 -0.57 16 9 C -0.16 -1.98 10.03 22.31 0.22 -1.76 16 10 C 0.08 1.37 5.86 22.38 0.13 1.50 16 11 F -0.15 -3.02 13.68 44.97 0.62 -2.40 16 12 C 0.46 14.12 7.25 71.24 0.52 14.64 16 13 O -0.54 -19.69 15.67 21.96 0.34 -19.35 16 14 O -0.35 -11.96 10.12 -51.33 -0.52 -12.48 16 15 C 0.08 2.93 5.47 71.98 0.39 3.32 16 16 C -0.09 -3.94 5.53 30.59 0.17 -3.77 16 17 C 0.03 1.37 4.97 29.85 0.15 1.52 16 18 C -0.54 -31.00 9.11 25.60 0.23 -30.76 16 19 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 20 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 21 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 22 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H 0.05 1.25 7.74 -2.39 -0.02 1.23 16 27 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 28 H 0.08 1.56 5.16 -2.39 -0.01 1.55 16 29 H 0.07 1.61 7.96 -2.38 -0.02 1.59 16 30 H 0.09 1.77 7.82 -2.39 -0.02 1.76 16 31 H 0.15 1.33 8.04 -2.91 -0.02 1.31 16 32 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 33 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 36 H 0.06 2.46 8.13 -2.39 -0.02 2.44 16 37 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -69.47 348.57 7.24 -62.23 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.01 Total: 7.36 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.48 Total: -24.67 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.18 Total: -31.82 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.62 Total: -2.40 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -69.47 7.24 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738765626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.559 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds