Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47248 * 2 1 4 4 C 1.53004 * 109.46575 * 119.99832 * 2 1 3 5 5 N 1.46502 * 109.46876 * 174.99971 * 4 2 1 6 6 C 1.46497 * 120.00116 * 95.34042 * 5 4 2 7 7 C 1.50695 * 109.47307 * 95.04750 * 6 5 4 8 8 H 1.07998 * 119.99876 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00384 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99836 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00373 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47335 * 89.99541 * 11 9 7 13 13 H 1.48500 * 109.47200 * 209.99995 * 11 9 7 14 14 H 1.48501 * 109.47198 * 329.99769 * 11 9 7 15 15 C 1.34775 * 119.99891 * 275.34405 * 5 4 2 16 16 O 1.21613 * 120.00255 * 5.29040 * 15 5 4 17 17 C 1.47292 * 120.00192 * 185.29736 * 15 5 4 18 18 C 1.36566 * 125.80965 * 185.75297 * 17 15 5 19 19 C 1.40064 * 106.92756 * 179.97438 * 18 17 15 20 20 C 1.36568 * 106.92641 * 359.97438 * 19 18 17 21 21 C 1.47290 * 125.80741 * 179.97438 * 20 19 18 22 22 N 1.34771 * 120.00096 * 180.02562 * 21 20 19 23 23 O 1.21615 * 119.99827 * 0.02562 * 21 20 19 24 24 O 1.34552 * 125.80296 * 5.44038 * 17 15 5 25 25 H 1.08997 * 109.47433 * 300.00240 * 1 2 3 26 26 H 1.09000 * 109.47117 * 60.00170 * 1 2 3 27 27 H 1.09004 * 109.47802 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47004 * 239.99637 * 2 1 3 29 29 H 1.08997 * 109.47100 * 59.99556 * 3 2 1 30 30 H 1.09004 * 109.47028 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46922 * 299.99949 * 3 2 1 32 32 H 1.08995 * 109.47456 * 55.00473 * 4 2 1 33 33 H 1.08994 * 109.47432 * 294.99757 * 4 2 1 34 34 H 1.08999 * 109.47279 * 215.04766 * 6 5 4 35 35 H 1.09001 * 109.46911 * 335.04360 * 6 5 4 36 36 H 0.97002 * 119.99954 * 180.02562 * 10 9 7 37 37 H 1.08002 * 126.53942 * 359.96155 * 18 17 15 38 38 H 1.08001 * 126.53593 * 179.97438 * 19 18 17 39 39 H 0.97001 * 120.00285 * 359.97438 * 22 21 20 40 40 H 0.96999 * 119.99888 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.3339 0.1731 1.8627 7 6 4.7134 -0.3281 3.2323 8 1 4.3676 -1.2943 3.5687 9 6 5.5012 0.4473 4.0563 10 7 5.9219 1.6242 3.6469 11 14 5.9723 -0.1743 5.7537 12 1 7.2448 -0.9349 5.6669 13 1 6.1467 0.9793 6.6725 14 1 4.8997 -1.0614 6.2713 15 6 4.0759 -1.8427 0.5185 16 8 3.3883 -2.6170 -0.1192 17 6 5.5381 -2.0157 0.5562 18 6 6.2534 -2.9294 -0.1638 19 6 7.6010 -2.7491 0.1728 20 6 7.6509 -1.7327 1.0835 21 6 8.8703 -1.2015 1.7161 22 7 8.7835 -0.1913 2.6040 23 8 9.9554 -1.6745 1.4373 24 8 6.3968 -1.2964 1.3016 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3635 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6053 -1.7198 1.2953 33 1 1.7515 -0.1583 2.1370 34 1 5.2362 0.3469 1.2765 35 1 3.7775 1.1055 1.9583 36 1 6.4765 2.1696 4.2265 37 1 5.8559 -3.6532 -0.8599 38 1 8.4407 -3.3075 -0.2141 39 1 7.9181 0.1863 2.8262 40 1 9.5867 0.1588 3.0204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746834479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -69.250805 kcal Electronic energy + Delta-G solvation = -24867.602190 eV Core-core repulsion = 21262.872806 eV Total energy + Delta-G solvation = -3604.729385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29125 -39.27029 -38.71346 -36.26771 -34.24756 -33.44507 -32.62745 -32.31394 -29.79407 -27.80042 -26.86994 -26.10370 -23.91575 -22.92025 -21.51812 -20.32974 -20.04510 -19.10627 -17.76011 -16.96069 -16.63083 -16.45297 -15.86862 -15.73778 -14.84247 -14.61386 -14.52219 -14.06538 -13.98548 -13.26982 -13.20245 -12.93024 -12.76068 -12.69037 -12.50714 -12.28055 -12.00997 -11.59617 -11.47112 -11.16818 -11.03620 -10.75518 -10.65827 -10.36047 -10.29419 -10.17839 -9.88409 -9.65958 -9.58882 -9.41159 -8.70546 -8.38354 -7.87712 -6.32171 -4.37868 1.15430 2.30625 2.94317 3.10486 3.18974 3.23422 3.49790 3.64556 3.69429 3.97397 4.20072 4.97794 4.99616 5.18767 5.21509 5.23050 5.34891 5.38916 5.78177 5.85871 5.90938 5.93690 6.01515 6.09007 6.11954 6.15477 6.26081 6.33004 6.46597 6.58746 6.65099 6.66484 6.93608 7.07891 7.17115 7.38995 7.59712 7.74372 7.90071 8.03888 8.45639 8.58291 8.72327 9.26632 10.72928 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.007124 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.193715 B = 3929.589291 C = 5355.017369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.127 3.873 5 N -0.580 5.580 6 C 0.230 3.770 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.592 3.408 16 O -0.547 6.547 17 C -0.015 4.015 18 C -0.162 4.162 19 C -0.142 4.142 20 C -0.065 4.065 21 C 0.611 3.389 22 N -0.836 5.836 23 O -0.541 6.541 24 O -0.091 6.091 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.425 0.575 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -0.833 -4.270 5.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.004 3.996 5 N -0.308 5.308 6 C 0.111 3.889 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.136 4.136 10 N -0.531 5.531 11 Si 0.706 3.294 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.379 3.621 16 O -0.429 6.429 17 C -0.071 4.071 18 C -0.183 4.183 19 C -0.163 4.163 20 C -0.120 4.120 21 C 0.395 3.605 22 N -0.401 5.401 23 O -0.421 6.421 24 O 0.017 5.983 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.259 0.741 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.595 -1.158 -4.556 5.370 hybrid contribution 0.349 0.023 1.362 1.406 sum -2.246 -1.136 -3.194 4.066 Atomic orbital electron populations 1.21744 0.95101 1.01547 1.01514 1.21500 0.95461 0.96885 0.99382 1.21876 1.01995 0.95400 1.01039 1.21471 0.79636 1.00835 0.97679 1.48197 1.07081 1.26110 1.49421 1.19737 0.90093 0.86816 0.92279 1.21463 1.31037 1.03908 0.99322 0.92177 1.24843 0.95929 0.94790 0.98044 1.69960 1.35895 1.10164 1.37083 0.86774 0.79488 0.78764 0.84363 1.20165 1.20828 1.19636 1.16797 0.83537 0.81630 0.80088 1.90764 1.61724 1.46054 1.44311 1.22483 0.91371 0.96238 0.97027 1.21793 0.92186 1.01393 1.02920 1.21791 0.97625 0.98408 0.98486 1.22369 0.84776 1.01106 1.03796 1.16684 0.85622 0.79544 0.78635 1.43985 1.15040 1.36658 1.44410 1.90834 1.26510 1.60685 1.64029 1.84784 1.13801 1.47973 1.51710 0.92679 0.92872 0.92745 0.90913 0.92611 0.91963 0.93475 0.91037 0.89863 0.93750 0.93355 0.92502 0.82196 0.82272 0.74086 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.16 0.34 -1.34 16 2 C -0.11 -1.66 3.09 -90.62 -0.28 -1.94 16 3 C -0.15 -2.12 8.35 37.16 0.31 -1.81 16 4 C 0.13 2.14 4.73 -4.04 -0.02 2.12 16 5 N -0.58 -11.44 2.21 -176.39 -0.39 -11.83 16 6 C 0.23 4.99 3.69 -5.20 -0.02 4.98 16 7 C -0.52 -12.27 7.80 -34.44 -0.27 -12.54 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.07 1.54 4.80 -17.82 -0.09 1.46 16 10 N -0.89 -21.21 12.74 55.43 0.71 -20.50 16 11 Si 0.88 18.95 29.54 -169.99 -5.02 13.93 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 C 0.59 12.15 7.57 -12.58 -0.10 12.06 16 16 O -0.55 -11.67 16.48 5.27 0.09 -11.58 16 17 C -0.02 -0.30 6.66 -36.51 -0.24 -0.55 16 18 C -0.16 -2.82 10.60 -39.50 -0.42 -3.24 16 19 C -0.14 -2.43 10.60 -39.50 -0.42 -2.85 16 20 C -0.06 -1.25 7.14 -36.51 -0.26 -1.51 16 21 C 0.61 11.68 8.08 -12.58 -0.10 11.58 16 22 N -0.84 -14.79 8.87 30.40 0.27 -14.52 16 23 O -0.54 -11.00 17.70 5.26 0.09 -10.91 16 24 O -0.09 -1.88 6.11 4.34 0.03 -1.86 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.03 6.39 -51.93 -0.33 0.70 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 33 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 34 H 0.04 1.03 5.93 -51.93 -0.31 0.72 16 35 H 0.05 1.08 6.81 -51.93 -0.35 0.73 16 36 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 37 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.42 8.27 7.33 -40.82 -0.30 7.97 16 40 H 0.40 5.96 8.93 -40.82 -0.36 5.59 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -26.44 339.33 -6.07 -32.50 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.39 Total: 13.24 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.56 Total: 6.41 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.59 Total: -46.85 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.21 Total: -24.35 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.44 -6.07 -32.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746834479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.746 kcal (2) G-P(sol) polarization free energy of solvation -26.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds