Wall clock time and date at job start Tue Mar 31 2020 08:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47073 * 2 1 4 4 C 1.46494 * 119.99885 * 270.00046 * 3 2 1 5 5 C 1.50708 * 109.46798 * 269.99910 * 4 3 2 6 6 H 1.07990 * 120.00319 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99731 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00287 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00277 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.46925 * 89.99711 * 9 7 5 11 11 H 1.48501 * 109.47139 * 209.99798 * 9 7 5 12 12 H 1.48494 * 109.46980 * 330.00189 * 9 7 5 13 13 C 1.34778 * 119.99996 * 89.99774 * 3 2 1 14 14 O 1.21284 * 119.99619 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99953 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46717 * 179.97438 * 15 13 3 17 17 C 1.34784 * 116.99999 * 179.97438 * 16 15 13 18 18 O 1.21555 * 119.99859 * 0.02562 * 17 16 15 19 19 C 1.47104 * 120.00333 * 180.02562 * 17 16 15 20 20 C 1.46742 * 127.02566 * 359.97438 * 19 17 16 21 21 C 1.34434 * 106.37807 * 179.75815 * 20 19 17 22 22 N 1.36428 * 109.08317 * 0.42793 * 21 20 19 23 23 H 0.97001 * 124.81216 * 179.82495 * 22 21 20 24 24 C 1.34629 * 110.38020 * 359.54919 * 22 21 20 25 25 C 1.50697 * 125.89681 * 180.24839 * 24 22 21 26 26 H 1.09007 * 109.47483 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47424 * 300.00083 * 1 2 3 28 28 H 1.08999 * 109.47288 * 60.00340 * 1 2 3 29 29 H 1.09002 * 109.47185 * 239.99451 * 2 1 3 30 30 H 1.08998 * 109.46599 * 119.99948 * 2 1 3 31 31 H 1.09007 * 109.47441 * 29.99612 * 4 3 2 32 32 H 1.09000 * 109.47341 * 150.00391 * 4 3 2 33 33 H 0.96995 * 120.00976 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46816 * 60.00255 * 15 13 3 35 35 H 1.08997 * 109.47027 * 300.00098 * 15 13 3 36 36 H 1.08011 * 126.80932 * 0.02562 * 20 19 17 37 37 H 1.07996 * 125.45887 * 180.27324 * 21 20 19 38 38 H 1.09001 * 109.47402 * 90.02919 * 25 24 22 39 39 H 1.09004 * 109.47234 * 210.03097 * 25 24 22 40 40 H 1.09002 * 109.46979 * 330.02522 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3895 -2.8779 8 7 5.3913 2.1833 -3.2573 9 14 3.0128 3.4350 -3.9293 10 1 3.1163 4.8554 -3.5082 11 1 3.4058 3.3118 -5.3560 12 1 1.6131 2.9691 -3.7592 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1671 15 6 1.9911 1.3064 2.4723 16 8 2.3063 2.1958 3.5759 17 6 2.1337 1.7105 4.8214 18 8 1.7311 0.5746 4.9807 19 6 2.4324 2.5553 5.9880 20 6 2.9230 3.9382 5.9752 21 6 3.0474 4.3083 7.2615 22 7 2.6836 3.2658 8.0628 23 1 2.6897 3.2843 9.0326 24 6 2.3092 2.2095 7.3167 25 6 1.8373 0.8787 7.8432 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1384 33 1 5.7172 2.5731 -4.0836 34 1 2.6210 0.4187 2.5303 35 1 0.9431 1.0126 2.5298 36 1 3.1371 4.5409 5.1047 37 1 3.3841 5.2751 7.6056 38 1 0.7549 0.9010 7.9696 39 1 2.1044 0.0929 7.1366 40 1 2.3114 0.6794 8.8043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750529427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:50 Heat of formation + Delta-G solvation = -72.455576 kcal Electronic energy + Delta-G solvation = -23274.222258 eV Core-core repulsion = 19669.353904 eV Total energy + Delta-G solvation = -3604.868354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41478 -39.97402 -38.82613 -36.13146 -35.31651 -32.72487 -31.82569 -31.45386 -30.39720 -29.20031 -27.18593 -26.42585 -23.43165 -22.98812 -22.04270 -20.89725 -19.69099 -18.50886 -18.01378 -16.95422 -16.87279 -16.46640 -16.31659 -15.57402 -15.08237 -15.00213 -14.42338 -13.96985 -13.79664 -13.49745 -13.42969 -13.23805 -12.97269 -12.82140 -12.73136 -12.43586 -12.33969 -12.13257 -11.80174 -11.73818 -11.40785 -10.97058 -10.81048 -10.49786 -10.42738 -10.36704 -10.13772 -9.52303 -9.08349 -9.02177 -8.56708 -8.42513 -7.75801 -6.06354 -4.05376 1.38055 2.23155 2.52951 3.04648 3.23376 3.31003 3.31637 3.37401 3.39397 3.92425 4.41722 4.54084 4.77005 4.87381 4.90447 5.06365 5.23507 5.26356 5.27080 5.28468 5.35522 5.41735 5.56074 5.71140 5.72150 5.76663 5.95121 6.00718 6.15304 6.40734 6.51649 6.54447 6.70627 6.73626 6.94819 7.15165 7.31616 7.62159 7.98032 8.18982 8.48318 8.89817 8.98196 9.53416 11.07023 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.003389 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.374005 B = 8259.093837 C = 9012.573790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.218 3.782 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.053 3.947 16 O -0.323 6.323 17 C 0.541 3.459 18 O -0.527 6.527 19 C -0.225 4.225 20 C -0.136 4.136 21 C -0.028 4.028 22 N -0.548 5.548 23 H 0.417 0.583 24 C 0.113 3.887 25 C -0.097 4.097 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 -1.995 22.183 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.323 5.323 4 C 0.098 3.902 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.393 6.393 15 C -0.024 4.024 16 O -0.238 6.238 17 C 0.388 3.612 18 O -0.419 6.419 19 C -0.233 4.233 20 C -0.159 4.159 21 C -0.154 4.154 22 N -0.144 5.144 23 H 0.254 0.746 24 C -0.006 4.006 25 C -0.154 4.154 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.174 0.826 37 H 0.190 0.810 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.296 -1.605 22.135 24.061 hybrid contribution -0.401 0.440 -0.321 0.677 sum -9.697 -1.165 21.814 23.900 Atomic orbital electron populations 1.22246 0.96554 1.01822 1.02312 1.21530 0.93610 0.83615 1.03463 1.47860 1.64396 1.13539 1.06462 1.19686 0.97449 0.93445 0.79609 1.21338 0.95323 1.33013 1.07184 0.90666 1.24852 0.95003 0.95777 0.97341 1.69893 1.15124 1.44997 1.23538 0.86851 0.81457 0.81661 0.79730 1.19856 1.21085 1.19037 1.19761 0.79303 0.87115 0.84346 1.90709 1.44192 1.17603 1.86771 1.22857 1.02609 0.92699 0.84275 1.86633 1.78866 1.44320 1.13992 1.20125 0.73698 0.84748 0.82633 1.90777 1.44726 1.19576 1.86788 1.19365 1.18074 0.96455 0.89392 1.22270 1.02792 0.94098 0.96749 1.21777 1.09480 0.93732 0.90458 1.41551 1.52373 1.11175 1.09307 0.74571 1.20556 0.99661 0.90610 0.89752 1.20615 1.01645 0.91476 1.01700 0.91734 0.92984 0.92038 0.89263 0.91329 0.94938 0.94434 0.92551 0.88617 0.88813 0.82601 0.81015 0.90124 0.87998 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 5 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 9 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.51 10.97 7.75 -10.98 -0.09 10.89 16 14 O -0.52 -13.43 16.08 -14.11 -0.23 -13.65 16 15 C 0.05 0.91 4.51 36.01 0.16 1.07 16 16 O -0.32 -5.92 9.66 -47.40 -0.46 -6.38 16 17 C 0.54 8.80 7.95 34.33 0.27 9.07 16 18 O -0.53 -8.70 14.67 -19.31 -0.28 -8.99 16 19 C -0.22 -3.10 6.33 -103.01 -0.65 -3.75 16 20 C -0.14 -1.68 11.00 -37.49 -0.41 -2.09 16 21 C -0.03 -0.25 11.87 -16.85 -0.20 -0.45 16 22 N -0.55 -4.10 5.89 -8.88 -0.05 -4.15 16 23 H 0.42 1.51 8.96 -40.82 -0.37 1.14 16 24 C 0.11 1.17 7.22 -81.51 -0.59 0.58 16 25 C -0.10 -0.78 9.90 36.00 0.36 -0.43 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 30 H 0.07 0.93 6.44 -51.93 -0.33 0.60 16 31 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 32 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.10 1.50 7.40 -51.93 -0.38 1.12 16 35 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 36 H 0.16 1.99 8.06 -52.48 -0.42 1.56 16 37 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.03 6.51 -51.93 -0.34 0.69 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -37.36 344.08 -6.85 -44.22 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.44 Total: 0.27 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.25 Total: 6.34 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.29 Total: -44.00 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.97 Total: -29.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.36 -6.85 -44.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750529427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.237 kcal (2) G-P(sol) polarization free energy of solvation -37.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds