Wall clock time and date at job start Tue Mar 31 2020 07:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53001 * 117.51964 * 145.70217 * 2 1 3 5 5 C 1.52999 * 60.00190 * 107.47982 * 4 2 1 6 6 H 1.09004 * 117.49681 * 107.48417 * 5 4 2 7 7 C 1.50701 * 117.51964 * 252.51996 * 5 4 2 8 8 O 1.20827 * 119.99653 * 68.62670 * 7 5 4 9 9 O 1.34222 * 119.99780 * 248.62470 * 7 5 4 10 10 C 1.45199 * 116.99913 * 179.97438 * 9 7 5 11 11 C 1.50708 * 109.47386 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99524 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00127 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.46737 * 90.00132 * 14 13 11 16 16 H 1.07990 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99342 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00610 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99557 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46980 * 89.99773 * 19 17 15 21 21 H 1.48499 * 109.46909 * 209.99851 * 19 17 15 22 22 H 1.48496 * 109.47165 * 330.00197 * 19 17 15 23 23 C 1.46505 * 120.00233 * 0.02562 * 13 11 10 24 24 C 1.53001 * 109.47101 * 89.99509 * 23 13 11 25 25 C 1.47206 * 109.46608 * 180.02562 * 24 23 13 26 26 N 9.16074 * 57.85033 * 225.04847 * 2 1 3 27 27 H 1.09005 * 109.46643 * 205.58082 * 1 2 3 28 28 H 1.08996 * 109.47432 * 325.57979 * 1 2 3 29 29 H 1.09000 * 109.47232 * 85.58579 * 1 2 3 30 30 H 1.09001 * 117.49733 * 214.97413 * 4 2 1 31 31 H 1.08995 * 117.49577 * 359.97438 * 4 2 1 32 32 H 1.08998 * 109.47410 * 300.00147 * 10 9 7 33 33 H 1.09003 * 109.46995 * 60.00245 * 10 9 7 34 34 H 1.09000 * 109.47408 * 210.00512 * 14 13 11 35 35 H 1.09002 * 109.46840 * 330.00691 * 14 13 11 36 36 H 0.97000 * 119.99880 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47239 * 209.99792 * 23 13 11 38 38 H 1.09006 * 109.46773 * 329.99582 * 23 13 11 39 39 H 1.08999 * 109.47263 * 299.99693 * 24 23 13 40 40 H 1.08993 * 109.46949 * 60.00381 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 0.7646 5 6 2.2365 -1.1208 -0.7654 6 1 3.1714 -0.8746 -1.2689 7 6 1.3720 -2.1402 -1.4616 8 8 0.1684 -2.0531 -1.4021 9 8 1.9393 -3.1447 -2.1477 10 6 1.0453 -4.0899 -2.7924 11 6 1.8556 -5.1395 -3.5087 12 8 3.0672 -5.0954 -3.4783 13 7 1.2339 -6.1275 -4.1821 14 6 2.0215 -7.1475 -4.8789 15 6 2.2928 -8.2980 -3.9440 16 1 1.9158 -8.2721 -2.9324 17 6 3.0223 -9.3835 -4.3805 18 7 3.4818 -9.4147 -5.6123 19 14 3.3580 -10.8099 -3.2219 20 1 2.2667 -11.8103 -3.3393 21 1 4.6519 -11.4445 -3.5800 22 1 3.4219 -10.3090 -1.8255 23 6 -0.2298 -6.1810 -4.2184 24 6 -0.7394 -5.3870 -5.4229 25 6 -2.2101 -5.4403 -5.4589 26 7 -3.3447 -5.4797 -5.4890 27 1 -0.3633 -0.9270 0.4438 28 1 -0.3634 0.8477 0.5809 29 1 -0.3634 0.0791 -1.0246 30 1 3.1721 -0.8750 1.2677 31 1 1.6120 -1.8584 1.2682 32 1 0.4171 -4.5670 -2.0403 33 1 0.4163 -3.5634 -3.5103 34 1 1.4661 -7.5065 -5.7453 35 1 2.9669 -6.7152 -5.2069 36 1 3.9947 -10.1787 -5.9193 37 1 -0.5535 -7.2183 -4.3037 38 1 -0.6319 -5.7490 -3.3020 39 1 -0.4158 -4.3497 -5.3376 40 1 -0.3373 -5.8190 -6.3393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753787599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:21 Heat of formation + Delta-G solvation = -66.050583 kcal Electronic energy + Delta-G solvation = -23186.787005 eV Core-core repulsion = 19582.196393 eV Total energy + Delta-G solvation = -3604.590613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84303 -39.32892 -37.72775 -36.88125 -35.98635 -35.28084 -32.95892 -30.92696 -29.68897 -28.75209 -26.88460 -24.80489 -24.09306 -22.71598 -21.50192 -20.22486 -18.83260 -17.96087 -17.72625 -16.71607 -16.50325 -16.42681 -16.26398 -15.47638 -15.13736 -14.76834 -14.53581 -14.24028 -13.71697 -13.50626 -13.40858 -12.98984 -12.80260 -12.68127 -12.49268 -12.43511 -12.21494 -12.09028 -11.79532 -11.79185 -11.33955 -11.06761 -10.98942 -10.70055 -10.64716 -10.62279 -10.48093 -10.23472 -10.16709 -9.76979 -9.14869 -8.51403 -7.97517 -6.13149 -4.18146 1.98745 2.33819 2.70359 2.79684 3.10573 3.26558 3.33979 3.37772 3.43362 3.59588 4.09822 4.28798 4.38053 4.47545 4.57560 4.78195 4.83073 4.95637 5.00877 5.04697 5.13301 5.17663 5.22775 5.40315 5.42343 5.51229 5.61421 5.71587 5.75094 5.82125 5.99695 6.13972 6.38369 6.82304 7.25332 7.33163 7.55339 7.68874 7.82667 8.08406 8.11745 8.70854 8.88054 9.47639 10.95031 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.004055 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.641013 B = 6902.664925 C = 8512.571074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 H 0.117 0.883 4 C -0.146 4.146 5 C -0.168 4.168 6 H 0.137 0.863 7 C 0.491 3.509 8 O -0.507 6.507 9 O -0.325 6.325 10 C 0.046 3.954 11 C 0.509 3.491 12 O -0.509 6.509 13 N -0.592 5.592 14 C 0.246 3.754 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.113 3.887 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.442 5.442 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.264 0.736 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 16.179 7.443 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 H 0.135 0.865 4 C -0.183 4.183 5 C -0.187 4.187 6 H 0.155 0.845 7 C 0.334 3.666 8 O -0.396 6.396 9 O -0.240 6.240 10 C -0.031 4.031 11 C 0.293 3.707 12 O -0.383 6.383 13 N -0.325 5.325 14 C 0.128 3.872 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.014 4.014 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.120 5.120 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.041 16.000 7.268 18.583 hybrid contribution 0.550 -0.996 0.420 1.213 sum -5.491 15.004 7.688 17.731 Atomic orbital electron populations 1.21438 0.91383 1.01793 1.02768 1.22529 0.96690 0.93780 1.00653 0.86464 1.23182 1.03443 1.01488 0.90204 1.21807 1.02177 0.98871 0.95832 0.84473 1.22665 0.87339 0.80421 0.76137 1.90666 1.15844 1.74017 1.59028 1.86564 1.40247 1.35885 1.61278 1.22980 0.92096 0.90158 0.97864 1.19748 0.88407 0.82144 0.80361 1.90742 1.13550 1.74428 1.59580 1.48161 1.05261 1.27289 1.51828 1.19421 0.91620 0.84369 0.91787 1.21407 1.34652 1.02292 0.98721 0.92273 1.24910 0.95239 0.98474 0.95274 1.69913 1.36259 1.30938 1.16021 0.86499 0.77735 0.82052 0.81171 1.20614 1.21054 1.19850 1.21398 0.81879 1.02293 0.95786 1.19891 0.81597 1.04075 1.03683 1.29029 0.95035 0.93000 0.93130 1.81201 1.13033 1.08970 1.08754 0.91681 0.92828 0.91267 0.87120 0.87923 0.88547 0.88717 0.94311 0.93338 0.92587 0.88193 0.90656 0.87666 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.43 37.16 0.31 -0.75 16 2 C -0.12 -0.95 6.41 -90.61 -0.58 -1.53 16 3 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.18 9.88 -26.73 -0.26 -1.44 16 5 C -0.17 -1.66 6.30 -91.77 -0.58 -2.24 16 6 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 7 C 0.49 6.46 7.72 36.01 0.28 6.74 16 8 O -0.51 -7.14 12.86 -18.75 -0.24 -7.39 16 9 O -0.32 -5.02 9.75 -45.88 -0.45 -5.46 16 10 C 0.05 0.66 4.50 36.01 0.16 0.83 16 11 C 0.51 9.49 7.75 -10.98 -0.09 9.41 16 12 O -0.51 -12.02 16.08 -14.10 -0.23 -12.24 16 13 N -0.59 -10.63 2.46 -175.05 -0.43 -11.06 16 14 C 0.25 5.70 5.16 -5.19 -0.03 5.67 16 15 C -0.53 -13.99 9.39 -34.44 -0.32 -14.31 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.11 1.46 5.17 -4.04 -0.02 1.44 16 24 C -0.05 -0.52 6.03 -29.51 -0.18 -0.70 16 25 C 0.22 2.63 15.43 -20.77 -0.32 2.31 16 26 N -0.44 -6.58 18.54 42.14 0.78 -5.80 16 27 H 0.06 0.68 7.02 -51.93 -0.36 0.31 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.72 7.27 -51.93 -0.38 0.34 16 30 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.10 1.25 7.39 -51.93 -0.38 0.86 16 33 H 0.09 1.10 7.18 -51.93 -0.37 0.73 16 34 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 39 H 0.11 0.89 7.22 -51.93 -0.38 0.51 16 40 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -33.58 352.42 -6.77 -40.35 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.51 Total: -2.35 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.72 Total: 7.05 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 1.09 Total: -41.24 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.92 Total: -25.09 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.58 -6.77 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753787599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.703 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds