Wall clock time and date at job start Tue Mar 31 2020 07:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54973 * 2 1 4 4 C 1.53001 * 117.51964 * 145.70217 * 2 1 3 5 5 C 1.52999 * 60.00190 * 107.47982 * 4 2 1 6 6 H 1.09004 * 117.49681 * 107.48417 * 5 4 2 7 7 C 1.50701 * 117.51964 * 252.51996 * 5 4 2 8 8 O 1.20827 * 119.99653 * 68.62670 * 7 5 4 9 9 O 1.34222 * 119.99780 * 248.62470 * 7 5 4 10 10 C 1.45199 * 116.99913 * 179.97438 * 9 7 5 11 11 C 1.50708 * 109.47386 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99524 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00127 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.46737 * 90.00132 * 14 13 11 16 16 H 1.07990 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99342 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00610 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99557 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46980 * 89.99773 * 19 17 15 21 21 H 1.48499 * 109.46909 * 209.99851 * 19 17 15 22 22 H 1.48496 * 109.47165 * 330.00197 * 19 17 15 23 23 C 1.46505 * 120.00233 * 0.02562 * 13 11 10 24 24 C 1.53001 * 109.47101 * 89.99509 * 23 13 11 25 25 C 1.47206 * 109.46608 * 180.02562 * 24 23 13 26 26 N 9.16074 * 57.85033 * 225.04847 * 2 1 3 27 27 H 1.09005 * 109.46643 * 205.58082 * 1 2 3 28 28 H 1.08996 * 109.47432 * 325.57979 * 1 2 3 29 29 H 1.09000 * 109.47232 * 85.58579 * 1 2 3 30 30 H 1.09001 * 117.49733 * 214.97413 * 4 2 1 31 31 H 1.08995 * 117.49577 * 359.97438 * 4 2 1 32 32 H 1.08998 * 109.47410 * 300.00147 * 10 9 7 33 33 H 1.09003 * 109.46995 * 60.00245 * 10 9 7 34 34 H 1.09000 * 109.47408 * 210.00512 * 14 13 11 35 35 H 1.09002 * 109.46840 * 330.00691 * 14 13 11 36 36 H 0.97000 * 119.99880 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47239 * 209.99792 * 23 13 11 38 38 H 1.09006 * 109.46773 * 329.99582 * 23 13 11 39 39 H 1.08999 * 109.47263 * 299.99693 * 24 23 13 40 40 H 1.08993 * 109.46949 * 60.00381 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1210 0.7646 5 6 2.2365 -1.1208 -0.7654 6 1 3.1714 -0.8746 -1.2689 7 6 1.3720 -2.1402 -1.4616 8 8 0.1684 -2.0531 -1.4021 9 8 1.9393 -3.1447 -2.1477 10 6 1.0453 -4.0899 -2.7924 11 6 1.8556 -5.1395 -3.5087 12 8 3.0672 -5.0954 -3.4783 13 7 1.2339 -6.1275 -4.1821 14 6 2.0215 -7.1475 -4.8789 15 6 2.2928 -8.2980 -3.9440 16 1 1.9158 -8.2721 -2.9324 17 6 3.0223 -9.3835 -4.3805 18 7 3.4818 -9.4147 -5.6123 19 14 3.3580 -10.8099 -3.2219 20 1 2.2667 -11.8103 -3.3393 21 1 4.6519 -11.4445 -3.5800 22 1 3.4219 -10.3090 -1.8255 23 6 -0.2298 -6.1810 -4.2184 24 6 -0.7394 -5.3870 -5.4229 25 6 -2.2101 -5.4403 -5.4589 26 7 -3.3447 -5.4797 -5.4890 27 1 -0.3633 -0.9270 0.4438 28 1 -0.3634 0.8477 0.5809 29 1 -0.3634 0.0791 -1.0246 30 1 3.1721 -0.8750 1.2677 31 1 1.6120 -1.8584 1.2682 32 1 0.4171 -4.5670 -2.0403 33 1 0.4163 -3.5634 -3.5103 34 1 1.4661 -7.5065 -5.7453 35 1 2.9669 -6.7152 -5.2069 36 1 3.9947 -10.1787 -5.9193 37 1 -0.5535 -7.2183 -4.3037 38 1 -0.6319 -5.7490 -3.3020 39 1 -0.4158 -4.3497 -5.3376 40 1 -0.3373 -5.8190 -6.3393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753787599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:20 Heat of formation + Delta-G solvation = -85.208140 kcal Electronic energy + Delta-G solvation = -23187.617739 eV Core-core repulsion = 19582.196393 eV Total energy + Delta-G solvation = -3605.421347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87988 -40.71117 -38.63308 -38.01804 -37.00164 -36.69402 -34.88895 -32.24235 -30.96125 -29.62223 -28.48214 -25.81678 -25.37872 -24.33709 -22.22179 -21.12618 -20.24553 -18.95360 -18.90382 -18.37681 -17.80065 -17.67294 -17.44645 -16.76592 -16.21447 -16.05319 -15.79298 -15.62307 -14.85720 -14.64704 -14.44755 -14.18862 -13.95292 -13.74919 -13.64814 -13.59609 -13.44890 -13.25465 -13.10285 -12.97270 -12.74822 -12.51872 -12.40505 -12.19833 -12.05084 -11.74705 -11.67656 -11.37936 -11.25013 -10.96704 -10.68249 -10.58218 -9.58854 -8.18680 -6.30680 1.03373 1.26850 1.40785 1.43258 1.52322 1.57708 1.78591 1.81795 2.31012 2.45199 2.75716 3.03518 3.14031 3.54713 3.58407 3.69122 3.84487 3.92899 3.98819 4.07604 4.11739 4.15843 4.45843 4.51421 4.78635 4.78806 4.87930 4.96900 5.00490 5.01844 5.05381 5.16807 5.28197 5.32601 5.54871 5.57380 5.83042 6.10815 6.53657 6.59058 6.71104 6.78315 7.24882 7.41917 8.88341 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.004055 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.641013 B = 6902.664925 C = 8512.571074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.107 4.107 3 H 0.146 0.854 4 C -0.139 4.139 5 C -0.188 4.188 6 H 0.149 0.851 7 C 0.488 3.512 8 O -0.520 6.520 9 O -0.348 6.348 10 C 0.055 3.945 11 C 0.506 3.494 12 O -0.569 6.569 13 N -0.589 5.589 14 C 0.260 3.740 15 C -0.544 4.544 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.275 1.275 23 C 0.108 3.892 24 C -0.039 4.039 25 C 0.245 3.755 26 N -0.487 5.487 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.043 0.957 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 17.383 8.746 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.125 4.125 3 H 0.163 0.837 4 C -0.176 4.176 5 C -0.207 4.207 6 H 0.167 0.833 7 C 0.333 3.667 8 O -0.409 6.409 9 O -0.264 6.264 10 C -0.022 4.022 11 C 0.293 3.707 12 O -0.447 6.447 13 N -0.321 5.321 14 C 0.140 3.860 15 C -0.583 4.583 16 H 0.072 0.928 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.016 4.016 24 C -0.080 4.080 25 C -0.072 4.072 26 N -0.165 5.165 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.851 17.214 8.576 20.416 hybrid contribution 0.768 -1.336 0.030 1.541 sum -6.084 15.878 8.606 19.057 Atomic orbital electron populations 1.21412 0.92329 1.01730 1.01938 1.22687 0.95979 0.94648 0.99177 0.83677 1.23323 1.04371 1.01079 0.88780 1.22003 1.02693 0.99147 0.96885 0.83339 1.23298 0.87678 0.80130 0.75602 1.90656 1.16461 1.74289 1.59512 1.86571 1.41264 1.36648 1.61929 1.22915 0.91151 0.89445 0.98693 1.20484 0.88024 0.82575 0.79627 1.90710 1.16326 1.75993 1.61713 1.47996 1.07092 1.26033 1.50996 1.18907 0.90809 0.84501 0.91811 1.21748 1.34363 1.03264 0.98900 0.92760 1.25700 0.95207 1.01050 0.96672 1.70013 1.37079 1.31758 1.17526 0.85558 0.77823 0.79296 0.78997 1.19228 1.20967 1.19949 1.21631 0.78664 1.02968 0.98382 1.19844 0.80229 1.05302 1.02654 1.29104 0.94915 0.91501 0.91729 1.81244 1.14444 1.10631 1.10221 0.93439 0.90859 0.92785 0.84717 0.88773 0.86750 0.85433 0.93925 0.97406 0.92496 0.88792 0.87909 0.84896 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 8.43 71.98 0.61 -1.31 16 2 C -0.11 -1.44 6.41 -10.79 -0.07 -1.51 16 3 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.14 -1.91 9.88 30.59 0.30 -1.61 16 5 C -0.19 -3.40 6.30 -11.54 -0.07 -3.47 16 6 H 0.15 2.29 8.14 -2.38 -0.02 2.27 16 7 C 0.49 12.26 7.72 71.24 0.55 12.81 16 8 O -0.52 -13.93 12.86 21.96 0.28 -13.64 16 9 O -0.35 -10.47 9.75 -44.98 -0.44 -10.91 16 10 C 0.05 1.47 4.50 71.24 0.32 1.79 16 11 C 0.51 18.77 7.75 87.66 0.68 19.45 16 12 O -0.57 -27.69 16.08 15.78 0.25 -27.44 16 13 N -0.59 -20.89 2.46 -826.12 -2.03 -22.92 16 14 C 0.26 12.29 5.16 85.63 0.44 12.73 16 15 C -0.54 -28.97 9.39 25.60 0.24 -28.73 16 16 H 0.05 2.87 7.81 -2.92 -0.02 2.85 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.92 -52.81 13.29 21.45 0.28 -52.53 16 19 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 C 0.11 2.59 5.17 86.38 0.45 3.04 16 24 C -0.04 -0.71 6.03 28.79 0.17 -0.53 16 25 C 0.24 5.42 15.43 89.45 1.38 6.80 16 26 N -0.49 -13.80 18.54 20.00 0.37 -13.43 16 27 H 0.05 0.93 7.02 -2.38 -0.02 0.92 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 1.05 7.27 -2.39 -0.02 1.03 16 30 H 0.13 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.47 8.05 -2.39 -0.02 1.45 16 32 H 0.11 2.68 7.39 -2.39 -0.02 2.67 16 33 H 0.13 2.57 7.18 -2.39 -0.02 2.55 16 34 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 35 H 0.01 0.43 7.42 -2.39 -0.02 0.42 16 36 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 38 H 0.10 1.94 6.44 -2.38 -0.02 1.93 16 39 H 0.13 1.76 7.22 -2.39 -0.02 1.74 16 40 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.33 352.42 7.27 -68.06 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.05 Total: 6.97 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 5.46 Total: 20.64 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.37 Total: -88.88 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: 0.10 Total: -51.99 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.33 7.27 -68.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753787599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.146 kcal (2) G-P(sol) polarization free energy of solvation -75.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds