Wall clock time and date at job start Tue Mar 31 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47009 * 2 1 4 4 C 1.53003 * 109.47280 * 119.99914 * 2 1 3 5 5 N 1.46493 * 109.47380 * 175.41147 * 4 2 1 6 6 C 1.46500 * 120.00232 * 275.00632 * 5 4 2 7 7 C 1.50705 * 109.47125 * 264.68833 * 6 5 4 8 8 H 1.07998 * 119.99688 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99843 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00223 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99650 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47367 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47236 * 119.99837 * 11 9 7 14 14 H 1.48505 * 109.47261 * 239.99563 * 11 9 7 15 15 C 1.34779 * 119.99950 * 95.00541 * 5 4 2 16 16 O 1.21597 * 119.99930 * 356.22445 * 15 5 4 17 17 C 1.47495 * 119.99699 * 176.50295 * 15 5 4 18 18 C 1.37804 * 126.77362 * 351.52851 * 17 15 5 19 19 O 1.33499 * 108.34074 * 179.86851 * 18 17 15 20 20 C 1.34886 * 109.88839 * 0.41158 * 19 18 17 21 21 C 1.46771 * 125.65616 * 179.74840 * 20 19 18 22 22 N 1.34778 * 119.99875 * 359.97438 * 21 20 19 23 23 O 1.21682 * 120.00293 * 179.97438 * 21 20 19 24 24 C 1.36059 * 108.69000 * 359.74455 * 20 19 18 25 25 H 1.08998 * 109.47044 * 300.00446 * 1 2 3 26 26 H 1.08997 * 109.46789 * 60.00155 * 1 2 3 27 27 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47545 * 239.99501 * 2 1 3 29 29 H 1.08996 * 109.47320 * 65.28228 * 3 2 1 30 30 H 1.09005 * 109.47055 * 185.27776 * 3 2 1 31 31 H 1.08999 * 109.47272 * 305.27610 * 3 2 1 32 32 H 1.08996 * 109.46752 * 55.40518 * 4 2 1 33 33 H 1.09001 * 109.46725 * 295.41137 * 4 2 1 34 34 H 1.09007 * 109.46935 * 24.68378 * 6 5 4 35 35 H 1.08992 * 109.47106 * 144.68416 * 6 5 4 36 36 H 0.96993 * 120.00132 * 180.02562 * 10 9 7 37 37 H 1.07998 * 125.83307 * 359.97438 * 18 17 15 38 38 H 0.96999 * 119.99944 * 0.02562 * 22 21 20 39 39 H 0.97004 * 120.00266 * 179.97438 * 22 21 20 40 40 H 1.08001 * 126.68442 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5008 -0.8177 1.1953 6 6 4.1359 -1.9210 0.4703 7 6 4.4642 -3.0322 1.4340 8 1 4.2243 -2.9269 2.4817 9 6 5.0709 -4.1833 0.9779 10 7 5.3627 -4.3117 -0.2979 11 14 5.4786 -5.5603 2.1725 12 1 5.0522 -5.1712 3.5407 13 1 4.7653 -6.7972 1.7642 14 1 6.9429 -5.8072 2.1623 15 6 4.2606 0.1087 1.8127 16 8 3.7358 1.0616 2.3559 17 6 5.7289 -0.0303 1.8241 18 6 6.4579 -1.1187 1.3963 19 8 7.7542 -0.8504 1.5694 20 6 7.9007 0.3781 2.1066 21 6 9.1780 1.0172 2.4448 22 7 10.3370 0.3666 2.2214 23 8 9.1905 2.1344 2.9269 24 6 6.6682 0.9268 2.2830 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.7560 1.9283 0.9335 30 1 3.1259 1.4440 -0.0945 31 1 1.6016 1.9829 -0.8389 32 1 1.6111 -1.7223 1.2913 33 1 1.7454 -0.1621 2.1373 34 1 3.4542 -2.2931 -0.2947 35 1 5.0523 -1.5662 -0.0011 36 1 5.7891 -5.1216 -0.6188 37 1 6.0503 -2.0321 0.9888 38 1 10.3270 -0.5238 1.8367 39 1 11.1812 0.7891 2.4445 40 1 6.4485 1.9017 2.6924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759068844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:14 Heat of formation + Delta-G solvation = -61.041469 kcal Electronic energy + Delta-G solvation = -24320.458820 eV Core-core repulsion = 20716.085419 eV Total energy + Delta-G solvation = -3604.373401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.26867 -39.23257 -38.89003 -35.93046 -34.69175 -33.70232 -32.65273 -32.37060 -29.66015 -27.78135 -26.79377 -25.97212 -23.47827 -23.26910 -22.14722 -20.35500 -19.78755 -18.99632 -17.74999 -16.89563 -16.73188 -16.25169 -15.92796 -15.47025 -15.29968 -14.71147 -14.45731 -14.23550 -14.14101 -13.83303 -13.09391 -12.96706 -12.70661 -12.61165 -12.38967 -12.24212 -11.91623 -11.46499 -11.23644 -11.17320 -10.96119 -10.63569 -10.57387 -10.46007 -10.26597 -10.17091 -9.95144 -9.76856 -9.51760 -9.24699 -8.91626 -8.17763 -7.82053 -6.53199 -4.64621 1.44107 2.20946 3.02957 3.11900 3.15130 3.19799 3.34149 3.61090 3.93526 4.02608 4.13329 4.77030 5.13282 5.16260 5.24801 5.29863 5.44415 5.58785 5.79352 5.91462 5.96803 6.00872 6.04456 6.17880 6.27891 6.34089 6.38103 6.48927 6.55481 6.66004 6.67201 6.77930 6.80216 6.89813 7.11065 7.37079 7.45530 7.50232 7.67332 8.18920 8.20979 8.51565 8.95177 9.06088 10.48597 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.006914 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.930414 B = 4049.061281 C = 6309.410056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.135 4.135 4 C 0.126 3.874 5 N -0.591 5.591 6 C 0.216 3.784 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.066 3.934 10 N -0.877 5.877 11 Si 0.897 3.103 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.590 3.410 16 O -0.565 6.565 17 C -0.265 4.265 18 C 0.068 3.932 19 O -0.166 6.166 20 C -0.134 4.134 21 C 0.616 3.384 22 N -0.848 5.848 23 O -0.534 6.534 24 C -0.056 4.056 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.273 0.727 37 H 0.284 0.716 38 H 0.408 0.592 39 H 0.405 0.595 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 2.872 -0.764 3.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.003 3.997 5 N -0.321 5.321 6 C 0.096 3.904 7 C -0.591 4.591 8 H 0.090 0.910 9 C -0.140 4.140 10 N -0.513 5.513 11 Si 0.724 3.276 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.203 1.203 15 C 0.380 3.620 16 O -0.447 6.447 17 C -0.269 4.269 18 C -0.003 4.003 19 O -0.060 6.060 20 C -0.184 4.184 21 C 0.402 3.598 22 N -0.411 5.411 23 O -0.413 6.413 24 C -0.077 4.077 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.298 0.702 38 H 0.237 0.763 39 H 0.236 0.764 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.638 3.768 -0.398 4.128 hybrid contribution 0.439 -1.200 0.416 1.344 sum 2.077 2.568 0.018 3.303 Atomic orbital electron populations 1.21751 0.95231 1.01513 1.01440 1.21517 0.95291 0.97086 0.99338 1.21743 1.01069 0.95409 1.01014 1.21403 0.80161 1.00467 0.97652 1.47913 1.05780 1.26513 1.51872 1.19903 0.94515 0.83587 0.92407 1.21696 1.40657 1.00747 0.96047 0.90985 1.25090 0.95085 0.98247 0.95611 1.69930 1.39732 1.28492 1.13196 0.86404 0.78530 0.81443 0.81251 1.19214 1.20350 1.20273 1.17142 0.84922 0.81892 0.78071 1.90677 1.74211 1.32080 1.47716 1.20651 0.95178 0.97029 1.14029 1.29108 0.77613 1.01300 0.92294 1.84037 1.29469 1.30437 1.62026 1.21557 0.95438 0.87625 1.13800 1.16553 0.81928 0.84268 0.77003 1.43671 1.08095 1.21917 1.67410 1.90884 1.86640 1.18518 1.45263 1.21776 0.89590 0.99916 0.96421 0.92796 0.92933 0.92694 0.91107 0.92289 0.92991 0.93959 0.90609 0.90603 0.93511 0.93958 0.91685 0.70169 0.76327 0.76448 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 37.16 0.34 -1.43 16 2 C -0.11 -1.74 3.13 -90.62 -0.28 -2.02 16 3 C -0.13 -2.17 7.93 37.16 0.29 -1.88 16 4 C 0.13 2.23 4.93 -4.04 -0.02 2.21 16 5 N -0.59 -11.94 2.28 -176.31 -0.40 -12.34 16 6 C 0.22 4.62 4.71 -5.19 -0.02 4.60 16 7 C -0.55 -12.65 6.90 -34.44 -0.24 -12.89 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.07 1.51 4.83 -17.82 -0.09 1.42 16 10 N -0.88 -20.90 13.29 55.43 0.74 -20.17 16 11 Si 0.90 18.41 29.54 -169.99 -5.02 13.39 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 14 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 15 C 0.59 12.67 6.46 -12.49 -0.08 12.59 16 16 O -0.57 -12.93 15.03 5.28 0.08 -12.85 16 17 C -0.26 -5.45 5.98 -104.95 -0.63 -6.08 16 18 C 0.07 1.36 9.44 30.57 0.29 1.65 16 19 O -0.17 -2.99 10.33 6.18 0.06 -2.92 16 20 C -0.13 -2.38 7.09 -36.92 -0.26 -2.64 16 21 C 0.62 9.86 8.06 -12.81 -0.10 9.76 16 22 N -0.85 -9.44 8.87 30.28 0.27 -9.17 16 23 O -0.53 -10.05 17.68 5.21 0.09 -9.95 16 24 C -0.06 -1.08 10.42 -39.03 -0.41 -1.48 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.99 7.84 -51.93 -0.41 0.59 16 30 H 0.05 0.95 6.84 -51.93 -0.36 0.59 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 33 H 0.08 1.38 7.33 -51.93 -0.38 0.99 16 34 H 0.05 1.04 8.03 -51.92 -0.42 0.62 16 35 H 0.04 0.93 5.10 -51.93 -0.26 0.67 16 36 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 37 H 0.28 6.03 2.67 -52.49 -0.14 5.89 16 38 H 0.41 3.87 8.57 -40.82 -0.35 3.52 16 39 H 0.40 3.50 8.93 -40.82 -0.36 3.13 16 40 H 0.16 3.02 8.06 -52.49 -0.42 2.59 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -27.26 335.70 -5.51 -32.77 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.18 Total: 12.39 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.21 Total: 3.79 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.60 Total: -41.67 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.24 Total: -25.73 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.26 -5.51 -32.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759068844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.268 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds