Wall clock time and date at job start Tue Mar 31 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47009 * 2 1 4 4 C 1.53003 * 109.47280 * 119.99914 * 2 1 3 5 5 N 1.46493 * 109.47380 * 175.41147 * 4 2 1 6 6 C 1.46500 * 120.00232 * 275.00632 * 5 4 2 7 7 C 1.50705 * 109.47125 * 264.68833 * 6 5 4 8 8 H 1.07998 * 119.99688 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99843 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00223 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99650 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47367 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.47236 * 119.99837 * 11 9 7 14 14 H 1.48505 * 109.47261 * 239.99563 * 11 9 7 15 15 C 1.34779 * 119.99950 * 95.00541 * 5 4 2 16 16 O 1.21597 * 119.99930 * 356.22445 * 15 5 4 17 17 C 1.47495 * 119.99699 * 176.50295 * 15 5 4 18 18 C 1.37804 * 126.77362 * 351.52851 * 17 15 5 19 19 O 1.33499 * 108.34074 * 179.86851 * 18 17 15 20 20 C 1.34886 * 109.88839 * 0.41158 * 19 18 17 21 21 C 1.46771 * 125.65616 * 179.74840 * 20 19 18 22 22 N 1.34778 * 119.99875 * 359.97438 * 21 20 19 23 23 O 1.21682 * 120.00293 * 179.97438 * 21 20 19 24 24 C 1.36059 * 108.69000 * 359.74455 * 20 19 18 25 25 H 1.08998 * 109.47044 * 300.00446 * 1 2 3 26 26 H 1.08997 * 109.46789 * 60.00155 * 1 2 3 27 27 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47545 * 239.99501 * 2 1 3 29 29 H 1.08996 * 109.47320 * 65.28228 * 3 2 1 30 30 H 1.09005 * 109.47055 * 185.27776 * 3 2 1 31 31 H 1.08999 * 109.47272 * 305.27610 * 3 2 1 32 32 H 1.08996 * 109.46752 * 55.40518 * 4 2 1 33 33 H 1.09001 * 109.46725 * 295.41137 * 4 2 1 34 34 H 1.09007 * 109.46935 * 24.68378 * 6 5 4 35 35 H 1.08992 * 109.47106 * 144.68416 * 6 5 4 36 36 H 0.96993 * 120.00132 * 180.02562 * 10 9 7 37 37 H 1.07998 * 125.83307 * 359.97438 * 18 17 15 38 38 H 0.96999 * 119.99944 * 0.02562 * 22 21 20 39 39 H 0.97004 * 120.00266 * 179.97438 * 22 21 20 40 40 H 1.08001 * 126.68442 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5008 -0.8177 1.1953 6 6 4.1359 -1.9210 0.4703 7 6 4.4642 -3.0322 1.4340 8 1 4.2243 -2.9269 2.4817 9 6 5.0709 -4.1833 0.9779 10 7 5.3627 -4.3117 -0.2979 11 14 5.4786 -5.5603 2.1725 12 1 5.0522 -5.1712 3.5407 13 1 4.7653 -6.7972 1.7642 14 1 6.9429 -5.8072 2.1623 15 6 4.2606 0.1087 1.8127 16 8 3.7358 1.0616 2.3559 17 6 5.7289 -0.0303 1.8241 18 6 6.4579 -1.1187 1.3963 19 8 7.7542 -0.8504 1.5694 20 6 7.9007 0.3781 2.1066 21 6 9.1780 1.0172 2.4448 22 7 10.3370 0.3666 2.2214 23 8 9.1905 2.1344 2.9269 24 6 6.6682 0.9268 2.2830 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.7560 1.9283 0.9335 30 1 3.1259 1.4440 -0.0945 31 1 1.6016 1.9829 -0.8389 32 1 1.6111 -1.7223 1.2913 33 1 1.7454 -0.1621 2.1373 34 1 3.4542 -2.2931 -0.2947 35 1 5.0523 -1.5662 -0.0011 36 1 5.7891 -5.1216 -0.6188 37 1 6.0503 -2.0321 0.9888 38 1 10.3270 -0.5238 1.8367 39 1 11.1812 0.7891 2.4445 40 1 6.4485 1.9017 2.6924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759068844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:14 Heat of formation + Delta-G solvation = -78.775580 kcal Electronic energy + Delta-G solvation = -24321.227829 eV Core-core repulsion = 20716.085419 eV Total energy + Delta-G solvation = -3605.142410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.79501 -40.80724 -40.25912 -37.47632 -36.24807 -34.90460 -34.34195 -33.87697 -31.15731 -29.48641 -28.02365 -27.40880 -25.23100 -24.67280 -23.69153 -21.82088 -21.10887 -20.42926 -19.17334 -18.60836 -18.01935 -17.85335 -17.42654 -16.99938 -16.82283 -16.33459 -16.01311 -15.53611 -15.47613 -15.25980 -14.56135 -14.43317 -14.30347 -14.23193 -13.96327 -13.69822 -13.12255 -12.89577 -12.80091 -12.68162 -12.44681 -12.29581 -12.04777 -11.83266 -11.66583 -11.64421 -11.52477 -11.10402 -10.95784 -10.87566 -10.67739 -9.72308 -9.46379 -8.30756 -6.47594 -0.02137 0.60025 1.40734 1.48325 1.56628 1.63799 1.96543 2.16467 2.33601 2.44078 2.62204 2.98368 3.57400 3.81678 3.92183 4.01667 4.07483 4.19638 4.35147 4.45147 4.67308 4.70204 4.76193 4.83405 4.90218 5.01859 5.02839 5.09113 5.12168 5.18254 5.22286 5.42802 5.47922 5.59027 5.60357 5.77935 5.83701 5.89735 6.25702 6.46956 6.73009 7.08937 7.19572 7.33667 8.71041 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.006914 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.930414 B = 4049.061281 C = 6309.410056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.128 4.128 4 C 0.121 3.879 5 N -0.589 5.589 6 C 0.228 3.772 7 C -0.557 4.557 8 H 0.058 0.942 9 C 0.039 3.961 10 N -0.898 5.898 11 Si 0.947 3.053 12 H -0.275 1.275 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.583 3.417 16 O -0.585 6.585 17 C -0.277 4.277 18 C 0.063 3.937 19 O -0.154 6.154 20 C -0.117 4.117 21 C 0.618 3.382 22 N -0.817 5.817 23 O -0.563 6.563 24 C -0.076 4.076 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.277 0.723 37 H 0.275 0.725 38 H 0.420 0.580 39 H 0.422 0.578 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 2.325 -0.950 3.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.185 4.185 4 C -0.001 4.001 5 N -0.318 5.318 6 C 0.108 3.892 7 C -0.595 4.595 8 H 0.076 0.924 9 C -0.166 4.166 10 N -0.535 5.535 11 Si 0.772 3.228 12 H -0.200 1.200 13 H -0.202 1.202 14 H -0.195 1.195 15 C 0.374 3.626 16 O -0.469 6.469 17 C -0.281 4.281 18 C -0.008 4.008 19 O -0.047 6.047 20 C -0.168 4.168 21 C 0.402 3.598 22 N -0.381 5.381 23 O -0.444 6.444 24 C -0.097 4.097 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.289 0.711 38 H 0.251 0.749 39 H 0.256 0.744 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.263 3.184 -0.605 3.953 hybrid contribution 0.318 -1.014 0.466 1.161 sum 2.581 2.170 -0.139 3.375 Atomic orbital electron populations 1.21703 0.92519 1.02490 1.02531 1.21471 0.97474 0.96093 0.97658 1.21668 0.99340 0.96128 1.01397 1.21599 0.78788 1.01025 0.98696 1.47962 1.06835 1.25818 1.51192 1.19689 0.94100 0.83496 0.91943 1.21657 1.41000 1.01419 0.95424 0.92413 1.25552 0.94829 0.99585 0.96606 1.69976 1.40208 1.29130 1.14159 0.85653 0.78592 0.79317 0.79246 1.19982 1.20215 1.19494 1.17344 0.85469 0.81843 0.77992 1.90650 1.74671 1.32827 1.48759 1.20727 0.95019 0.97770 1.14592 1.28722 0.78206 1.00935 0.92979 1.84025 1.28485 1.30478 1.61714 1.21897 0.96087 0.86951 1.11822 1.16373 0.82309 0.83922 0.77151 1.43434 1.07338 1.21997 1.65354 1.90883 1.86904 1.19767 1.46829 1.21835 0.90113 1.00109 0.97679 0.92325 0.91226 0.91811 0.91672 0.93368 0.95748 0.91611 0.90107 0.91257 0.94414 0.94407 0.91321 0.71093 0.74913 0.74441 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.19 71.98 0.66 -2.46 16 2 C -0.11 -3.25 3.13 -10.79 -0.03 -3.29 16 3 C -0.13 -4.09 7.93 71.98 0.57 -3.52 16 4 C 0.12 4.30 4.93 86.38 0.43 4.73 16 5 N -0.59 -24.24 2.28 -829.96 -1.89 -26.13 16 6 C 0.23 9.90 4.71 85.63 0.40 10.30 16 7 C -0.56 -25.57 6.90 25.60 0.18 -25.40 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.04 1.75 4.83 84.66 0.41 2.16 16 10 N -0.90 -42.32 13.29 21.45 0.28 -42.04 16 11 Si 0.95 37.09 29.54 68.60 2.03 39.11 16 12 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 13 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 15 C 0.58 25.66 6.46 86.68 0.56 26.22 16 16 O -0.59 -27.49 15.03 -4.02 -0.06 -27.55 16 17 C -0.28 -11.59 5.98 -20.08 -0.12 -11.71 16 18 C 0.06 2.53 9.44 67.72 0.64 3.17 16 19 O -0.15 -5.38 10.33 -0.80 -0.01 -5.39 16 20 C -0.12 -4.05 7.09 24.00 0.17 -3.88 16 21 C 0.62 18.69 8.06 86.47 0.70 19.38 16 22 N -0.82 -15.89 8.87 -176.32 -1.56 -17.45 16 23 O -0.56 -20.48 17.68 -4.29 -0.08 -20.56 16 24 C -0.08 -2.96 10.42 22.63 0.24 -2.73 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.62 7.84 -2.39 -0.02 1.60 16 30 H 0.02 0.88 6.84 -2.38 -0.02 0.87 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 33 H 0.07 2.55 7.33 -2.39 -0.02 2.53 16 34 H 0.04 1.70 8.03 -2.38 -0.02 1.68 16 35 H 0.04 1.70 5.10 -2.39 -0.01 1.69 16 36 H 0.28 12.34 8.31 -92.71 -0.77 11.57 16 37 H 0.27 11.72 2.67 -2.91 -0.01 11.72 16 38 H 0.42 6.64 8.57 -92.71 -0.79 5.84 16 39 H 0.42 5.95 8.93 -92.71 -0.83 5.13 16 40 H 0.16 6.15 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -57.83 335.70 2.98 -54.85 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -0.53 Total: 32.16 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 4.80 Total: 13.00 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -3.17 Total: -85.62 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.14 Total: -53.50 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.11 kcal Total: -57.83 2.98 -54.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759068844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.924 kcal (2) G-P(sol) polarization free energy of solvation -57.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds