Wall clock time and date at job start Tue Mar 31 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46819 * 2 1 4 4 N 1.46500 * 109.47234 * 119.99347 * 2 1 3 5 5 C 1.34953 * 125.63696 * 300.03048 * 4 2 1 6 6 C 1.35485 * 108.98568 * 179.97438 * 5 4 2 7 7 C 1.39796 * 107.84537 * 0.02562 * 6 5 4 8 8 C 1.37698 * 125.63045 * 120.00337 * 4 2 1 9 9 C 1.46486 * 126.26444 * 0.02562 * 8 4 2 10 10 O 1.21628 * 120.00051 * 179.97438 * 9 8 4 11 11 O 1.34894 * 120.00371 * 0.02562 * 9 8 4 12 12 C 1.45196 * 117.00206 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47265 * 179.97438 * 12 11 9 14 14 O 1.21287 * 119.99622 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00047 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99532 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46510 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99442 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00591 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99703 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47355 * 90.00164 * 21 19 17 23 23 H 1.48505 * 109.47085 * 210.00173 * 21 19 17 24 24 H 1.48502 * 109.47181 * 330.00075 * 21 19 17 25 25 H 1.08997 * 109.46365 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46814 * 299.99985 * 1 2 3 27 27 H 1.08998 * 109.46855 * 60.00604 * 1 2 3 28 28 H 1.08994 * 109.47533 * 239.99815 * 2 1 3 29 29 H 1.09000 * 109.47234 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46914 * 299.99359 * 3 2 1 31 31 H 1.08994 * 109.47219 * 59.99623 * 3 2 1 32 32 H 1.08001 * 125.51338 * 359.97438 * 5 4 2 33 33 H 1.08001 * 126.08073 * 179.73240 * 6 5 4 34 34 H 1.07997 * 126.52260 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.46838 * 300.00000 * 12 11 9 36 36 H 1.09002 * 109.47160 * 59.99750 * 12 11 9 37 37 H 0.96990 * 120.00060 * 359.97438 * 15 13 12 38 38 H 1.08999 * 109.46942 * 299.99266 * 16 15 13 39 39 H 1.08997 * 109.47147 * 59.99953 * 16 15 13 40 40 H 0.96993 * 120.00541 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7630 -0.3301 2.4714 6 6 2.3784 -1.2010 3.3072 7 6 3.0478 -2.1460 2.5242 8 6 2.8135 -1.8147 1.2052 9 6 3.3186 -2.5281 0.0297 10 8 4.0165 -3.5143 0.1702 11 8 3.0105 -2.0908 -1.2087 12 6 3.5462 -2.8465 -2.3268 13 6 3.0998 -2.2145 -3.6201 14 8 2.3995 -1.2244 -3.6012 15 7 3.4787 -2.7496 -4.7976 16 6 3.0451 -2.1348 -6.0548 17 6 3.6010 -2.9193 -7.2153 18 1 4.2160 -3.7884 -7.0345 19 6 3.3243 -2.5272 -8.5079 20 7 2.5758 -1.4686 -8.7281 21 14 4.0138 -3.4991 -9.9465 22 1 3.0541 -4.5659 -10.3286 23 1 4.2285 -2.5897 -11.1007 24 1 5.3071 -4.1142 -9.5537 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4427 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.1648 0.5157 2.7766 33 1 2.3596 -1.1679 4.3866 34 1 3.6362 -2.9774 2.8831 35 1 4.6351 -2.8448 -2.2781 36 1 3.1819 -3.8727 -2.2796 37 1 4.0389 -3.5412 -4.8127 38 1 1.9562 -2.1361 -6.1032 39 1 3.4098 -1.1088 -6.1022 40 1 2.3809 -1.1930 -9.6374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763889592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:16 Heat of formation + Delta-G solvation = -81.151769 kcal Electronic energy + Delta-G solvation = -23303.275999 eV Core-core repulsion = 19698.030549 eV Total energy + Delta-G solvation = -3605.245449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.73855 -40.09471 -38.67736 -36.46768 -35.38359 -34.30470 -32.45931 -30.42084 -29.81288 -28.86310 -27.49000 -26.69692 -23.69267 -22.74686 -22.24912 -20.54064 -20.03735 -19.71492 -17.77412 -17.46823 -16.86697 -16.68306 -15.85905 -15.33035 -15.16947 -15.01764 -14.81930 -14.42819 -14.26760 -14.06838 -13.17356 -13.11296 -12.82148 -12.80447 -12.61013 -12.46730 -12.37991 -12.21791 -12.04124 -11.82456 -11.50080 -11.11630 -11.00564 -10.95215 -10.75982 -10.75213 -10.37805 -9.48403 -9.25002 -8.94290 -8.82456 -8.47750 -8.04677 -6.23628 -4.31079 1.13068 2.32220 2.51838 2.63407 3.04273 3.12207 3.20638 3.27127 3.29386 3.94525 4.29851 4.45056 4.58779 4.74956 4.81747 5.02305 5.10315 5.12767 5.16022 5.20451 5.28370 5.31103 5.33693 5.47445 5.51973 5.79459 5.82227 5.93878 5.94899 6.01532 6.27877 6.54924 6.81760 7.04792 7.16840 7.24724 7.40407 7.55504 7.68338 7.87491 8.44191 8.65728 8.90005 9.35534 10.86499 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.003026 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.425646 B = 9249.407131 C =10046.464081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.158 4.158 4 N -0.403 5.403 5 C 0.034 3.966 6 C -0.219 4.219 7 C -0.100 4.100 8 C -0.047 4.047 9 C 0.536 3.464 10 O -0.503 6.503 11 O -0.335 6.335 12 C 0.048 3.952 13 C 0.501 3.499 14 O -0.538 6.538 15 N -0.705 5.705 16 C 0.252 3.748 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.394 0.606 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 2.206 21.226 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 C -0.215 4.215 4 N -0.077 5.077 5 C -0.104 4.104 6 C -0.242 4.242 7 C -0.126 4.126 8 C -0.157 4.157 9 C 0.382 3.618 10 O -0.391 6.391 11 O -0.251 6.251 12 C -0.030 4.030 13 C 0.284 3.716 14 O -0.416 6.416 15 N -0.355 5.355 16 C 0.132 3.868 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.154 0.846 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.185 0.815 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.226 0.774 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.062 2.910 20.670 20.976 hybrid contribution 0.672 -0.965 -0.889 1.474 sum -1.391 1.945 19.781 19.925 Atomic orbital electron populations 1.22129 0.93045 1.03212 1.03140 1.22122 0.95818 0.94682 0.87196 1.22129 1.02204 0.94054 1.03139 1.44434 1.35891 1.20450 1.06885 1.21861 1.03868 1.01917 0.82750 1.20834 1.05546 0.98453 0.99402 1.21303 1.01339 1.00482 0.89455 1.19411 1.08452 0.95266 0.92608 1.19898 0.77627 0.82118 0.82172 1.90892 1.36174 1.25417 1.86659 1.86593 1.69473 1.54633 1.14355 1.22906 1.00379 0.95977 0.83707 1.19869 0.81916 0.85167 0.84642 1.90678 1.37828 1.25693 1.87354 1.46368 1.51635 1.31122 1.06366 1.19175 0.96021 0.94042 0.77583 1.21208 1.33372 1.13234 0.90602 0.91746 1.24947 0.94860 0.95106 0.99029 1.69962 1.36514 1.24195 1.21553 0.86392 0.79359 0.79615 0.81425 1.20404 1.20957 1.19684 0.91775 0.92162 0.89954 0.84620 0.91773 0.89960 0.92158 0.81544 0.83755 0.83301 0.88344 0.88352 0.77350 0.95260 0.95260 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.23 37.16 0.34 -1.19 16 2 C 0.10 1.17 3.50 -67.92 -0.24 0.93 16 3 C -0.16 -1.53 9.23 37.16 0.34 -1.19 16 4 N -0.40 -4.67 2.62 -105.97 -0.28 -4.95 16 5 C 0.03 0.31 10.24 -17.16 -0.18 0.14 16 6 C -0.22 -2.08 10.81 -39.98 -0.43 -2.51 16 7 C -0.10 -1.16 10.67 -39.09 -0.42 -1.58 16 8 C -0.05 -0.64 6.89 -81.99 -0.56 -1.20 16 9 C 0.54 8.19 7.92 34.05 0.27 8.46 16 10 O -0.50 -8.36 16.68 -19.36 -0.32 -8.69 16 11 O -0.33 -5.30 6.87 -47.71 -0.33 -5.63 16 12 C 0.05 0.72 5.96 36.01 0.21 0.93 16 13 C 0.50 9.65 7.91 -10.99 -0.09 9.56 16 14 O -0.54 -12.30 16.50 -14.11 -0.23 -12.53 16 15 N -0.70 -14.17 5.55 -61.47 -0.34 -14.51 16 16 C 0.25 6.43 5.43 -5.19 -0.03 6.41 16 17 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 21 Si 0.91 20.47 29.54 -169.99 -5.02 15.44 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.46 7.91 -51.93 -0.41 0.05 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.14 1.98 5.07 -51.93 -0.26 1.72 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.46 7.91 -51.93 -0.41 0.05 16 32 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -32.38 349.30 -7.32 -39.70 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.61 Total: 4.97 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.19 Total: 5.68 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.12 Total: -44.22 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.88 Total: -26.84 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.38 -7.32 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763889592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.448 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds