Wall clock time and date at job start Tue Mar 31 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46819 * 2 1 4 4 N 1.46500 * 109.47234 * 119.99347 * 2 1 3 5 5 C 1.34953 * 125.63696 * 300.03048 * 4 2 1 6 6 C 1.35485 * 108.98568 * 179.97438 * 5 4 2 7 7 C 1.39796 * 107.84537 * 0.02562 * 6 5 4 8 8 C 1.37698 * 125.63045 * 120.00337 * 4 2 1 9 9 C 1.46486 * 126.26444 * 0.02562 * 8 4 2 10 10 O 1.21628 * 120.00051 * 179.97438 * 9 8 4 11 11 O 1.34894 * 120.00371 * 0.02562 * 9 8 4 12 12 C 1.45196 * 117.00206 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47265 * 179.97438 * 12 11 9 14 14 O 1.21287 * 119.99622 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00047 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99532 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.46510 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99442 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00591 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99703 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47355 * 90.00164 * 21 19 17 23 23 H 1.48505 * 109.47085 * 210.00173 * 21 19 17 24 24 H 1.48502 * 109.47181 * 330.00075 * 21 19 17 25 25 H 1.08997 * 109.46365 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46814 * 299.99985 * 1 2 3 27 27 H 1.08998 * 109.46855 * 60.00604 * 1 2 3 28 28 H 1.08994 * 109.47533 * 239.99815 * 2 1 3 29 29 H 1.09000 * 109.47234 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46914 * 299.99359 * 3 2 1 31 31 H 1.08994 * 109.47219 * 59.99623 * 3 2 1 32 32 H 1.08001 * 125.51338 * 359.97438 * 5 4 2 33 33 H 1.08001 * 126.08073 * 179.73240 * 6 5 4 34 34 H 1.07997 * 126.52260 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.46838 * 300.00000 * 12 11 9 36 36 H 1.09002 * 109.47160 * 59.99750 * 12 11 9 37 37 H 0.96990 * 120.00060 * 359.97438 * 15 13 12 38 38 H 1.08999 * 109.46942 * 299.99266 * 16 15 13 39 39 H 1.08997 * 109.47147 * 59.99953 * 16 15 13 40 40 H 0.96993 * 120.00541 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7630 -0.3301 2.4714 6 6 2.3784 -1.2010 3.3072 7 6 3.0478 -2.1460 2.5242 8 6 2.8135 -1.8147 1.2052 9 6 3.3186 -2.5281 0.0297 10 8 4.0165 -3.5143 0.1702 11 8 3.0105 -2.0908 -1.2087 12 6 3.5462 -2.8465 -2.3268 13 6 3.0998 -2.2145 -3.6201 14 8 2.3995 -1.2244 -3.6012 15 7 3.4787 -2.7496 -4.7976 16 6 3.0451 -2.1348 -6.0548 17 6 3.6010 -2.9193 -7.2153 18 1 4.2160 -3.7884 -7.0345 19 6 3.3243 -2.5272 -8.5079 20 7 2.5758 -1.4686 -8.7281 21 14 4.0138 -3.4991 -9.9465 22 1 3.0541 -4.5659 -10.3286 23 1 4.2285 -2.5897 -11.1007 24 1 5.3071 -4.1142 -9.5537 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4427 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.1648 0.5157 2.7766 33 1 2.3596 -1.1679 4.3866 34 1 3.6362 -2.9774 2.8831 35 1 4.6351 -2.8448 -2.2781 36 1 3.1819 -3.8727 -2.2796 37 1 4.0389 -3.5412 -4.8127 38 1 1.9562 -2.1361 -6.1032 39 1 3.4098 -1.1088 -6.1022 40 1 2.3809 -1.1930 -9.6374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763889592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:16 Heat of formation + Delta-G solvation = -101.006173 kcal Electronic energy + Delta-G solvation = -23304.136950 eV Core-core repulsion = 19698.030549 eV Total energy + Delta-G solvation = -3606.106401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.63493 -41.31457 -40.25769 -37.67292 -36.26622 -36.18423 -34.43402 -31.48628 -30.74545 -30.22282 -28.43671 -28.26154 -25.02947 -24.21625 -23.32400 -21.69025 -21.37577 -20.81457 -19.15272 -18.72005 -18.11595 -17.90595 -17.53497 -16.98568 -16.47539 -16.36775 -15.83127 -15.69112 -15.63606 -14.95840 -14.66681 -14.50486 -14.11831 -13.85952 -13.77078 -13.61724 -13.57655 -13.23216 -13.13253 -13.02266 -12.95826 -12.73384 -12.32702 -12.25098 -12.05816 -12.00587 -11.80145 -11.51383 -10.93067 -10.83181 -9.94957 -9.77550 -9.32552 -8.31265 -6.47563 0.13123 1.13428 1.43633 1.44824 1.51293 1.56350 1.69325 1.76873 2.09323 2.32234 2.54446 3.04180 3.48429 3.65881 3.70301 3.93184 3.98576 4.00482 4.12378 4.23374 4.38823 4.47109 4.60516 4.65381 4.74839 4.96178 5.01131 5.02291 5.08183 5.16947 5.19020 5.20643 5.30513 5.39800 5.60640 5.73884 5.80568 5.93197 6.28403 6.52895 6.61148 6.75062 7.17958 7.32375 8.80759 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028179 B = 0.003026 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.425646 B = 9249.407131 C =10046.464081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 C -0.152 4.152 4 N -0.407 5.407 5 C 0.049 3.951 6 C -0.219 4.219 7 C -0.099 4.099 8 C -0.090 4.090 9 C 0.535 3.465 10 O -0.526 6.526 11 O -0.345 6.345 12 C 0.057 3.943 13 C 0.502 3.498 14 O -0.578 6.578 15 N -0.698 5.698 16 C 0.268 3.732 17 C -0.558 4.558 18 H 0.085 0.915 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.983 3.017 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.256 1.256 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.205 0.795 33 H 0.175 0.825 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.412 0.588 38 H -0.007 1.007 39 H -0.006 1.006 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 1.706 22.951 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.001 4.001 3 C -0.210 4.210 4 N -0.081 5.081 5 C -0.089 4.089 6 C -0.241 4.241 7 C -0.126 4.126 8 C -0.199 4.199 9 C 0.383 3.617 10 O -0.416 6.416 11 O -0.262 6.262 12 C -0.020 4.020 13 C 0.288 3.712 14 O -0.458 6.458 15 N -0.350 5.350 16 C 0.146 3.854 17 C -0.596 4.596 18 H 0.103 0.897 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.806 3.194 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.180 1.180 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.222 0.778 33 H 0.192 0.808 34 H 0.171 0.829 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.248 0.752 38 H 0.011 0.989 39 H 0.012 0.988 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.678 2.376 22.426 22.614 hybrid contribution 0.506 -0.735 -1.292 1.571 sum -1.172 1.640 21.134 21.230 Atomic orbital electron populations 1.22094 0.91699 1.02717 1.04453 1.22041 0.96835 0.95083 0.86155 1.22095 1.01285 0.93132 1.04451 1.44495 1.35808 1.20077 1.07696 1.22579 1.02641 1.02222 0.81490 1.21222 1.04637 0.97467 1.00806 1.21595 1.00992 1.00891 0.89129 1.19460 1.11038 0.97033 0.92415 1.20239 0.77266 0.82016 0.82153 1.90859 1.37497 1.26461 1.86807 1.86641 1.69757 1.54949 1.14825 1.22790 1.01591 0.96161 0.81412 1.20538 0.80631 0.84367 0.85683 1.90660 1.39491 1.27586 1.88058 1.46042 1.52054 1.31671 1.05211 1.18620 0.93733 0.92820 0.80199 1.21610 1.33376 1.13707 0.90870 0.89734 1.26017 0.94969 0.96041 1.02351 1.70115 1.38069 1.26173 1.22395 0.85180 0.79142 0.77906 0.77148 1.19647 1.20960 1.18015 0.93147 0.89272 0.90185 0.88308 0.93149 0.90194 0.89267 0.77795 0.80783 0.82890 0.85992 0.85998 0.75201 0.98854 0.98848 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.23 71.98 0.66 -2.14 16 2 C 0.10 2.26 3.50 45.00 0.16 2.41 16 3 C -0.15 -2.81 9.23 71.98 0.66 -2.15 16 4 N -0.41 -8.93 2.62 -489.19 -1.28 -10.21 16 5 C 0.05 0.74 10.24 83.58 0.86 1.60 16 6 C -0.22 -3.47 10.81 22.01 0.24 -3.23 16 7 C -0.10 -2.18 10.67 22.59 0.24 -1.94 16 8 C -0.09 -2.41 6.89 40.32 0.28 -2.13 16 9 C 0.54 16.57 7.92 69.97 0.55 17.12 16 10 O -0.53 -17.54 16.68 19.42 0.32 -17.21 16 11 O -0.35 -11.23 6.87 -51.69 -0.35 -11.58 16 12 C 0.06 1.71 5.96 71.24 0.42 2.14 16 13 C 0.50 19.87 7.91 87.66 0.69 20.56 16 14 O -0.58 -27.80 16.50 15.75 0.26 -27.54 16 15 N -0.70 -28.59 5.55 -466.77 -2.59 -31.18 16 16 C 0.27 14.30 5.43 85.63 0.46 14.76 16 17 C -0.56 -29.64 9.28 25.60 0.24 -29.40 16 18 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 19 C 0.01 0.34 5.46 84.66 0.46 0.80 16 20 N -0.93 -54.94 13.29 21.45 0.28 -54.65 16 21 Si 0.98 41.67 29.54 68.60 2.03 43.69 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.10 7.91 -2.39 -0.02 1.08 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 3.04 5.07 -2.39 -0.01 3.03 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.10 7.91 -2.39 -0.02 1.08 16 32 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.41 13.73 8.32 -92.72 -0.77 12.96 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -73.39 349.30 4.88 -68.51 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.28 Total: 21.77 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 5.94 Total: 18.40 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -3.59 Total: -96.04 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: 0.23 Total: -56.34 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -73.39 4.88 -68.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763889592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.500 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds