Wall clock time and date at job start Tue Mar 31 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 C 1.50693 * 109.46990 * 239.99889 * 2 1 3 5 5 H 1.08003 * 119.99764 * 239.99986 * 4 2 1 6 6 C 1.37874 * 120.00133 * 59.99998 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46787 * 89.99917 * 8 6 4 10 10 H 1.48499 * 109.47127 * 210.00005 * 8 6 4 11 11 H 1.48495 * 109.47045 * 330.00237 * 8 6 4 12 12 C 1.53001 * 109.47089 * 119.99524 * 2 1 3 13 13 O 1.45202 * 109.47151 * 300.00464 * 12 2 1 14 14 C 1.34732 * 116.99693 * 180.02562 * 13 12 2 15 15 O 1.21493 * 120.00025 * 359.97438 * 14 13 12 16 16 C 1.47595 * 119.99927 * 180.27283 * 14 13 12 17 17 C 1.41336 * 125.95871 * 179.72437 * 16 14 13 18 18 C 1.34841 * 107.70601 * 179.97438 * 17 16 14 19 19 N 1.36409 * 107.93542 * 0.11047 * 18 17 16 20 20 N 1.32169 * 125.95745 * 359.41398 * 16 14 13 21 21 C 1.46729 * 123.62092 * 179.77176 * 19 18 17 22 22 C 1.53529 * 107.95877 * 343.02965 * 21 19 18 23 23 C 1.53225 * 109.29690 * 47.29545 * 22 21 19 24 24 O 1.36028 * 128.62856 * 180.16394 * 18 17 16 25 25 H 1.09005 * 109.47323 * 300.00329 * 1 2 3 26 26 H 1.09001 * 109.46957 * 60.00059 * 1 2 3 27 27 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47110 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47234 * 299.99771 * 3 2 1 30 30 H 1.09005 * 109.47823 * 59.99978 * 3 2 1 31 31 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47123 * 179.97438 * 12 2 1 33 33 H 1.09004 * 109.46684 * 59.99783 * 12 2 1 34 34 H 1.07995 * 126.14600 * 359.96021 * 17 16 14 35 35 H 1.09003 * 109.76124 * 223.41346 * 21 19 18 36 36 H 1.09000 * 109.80376 * 102.67403 * 21 19 18 37 37 H 1.08998 * 109.49859 * 287.34340 * 22 21 19 38 38 H 1.09001 * 109.49593 * 167.23891 * 22 21 19 39 39 H 1.09004 * 109.50076 * 175.45859 * 23 22 21 40 40 H 1.08990 * 109.51034 * 55.33905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0366 2.4348 14 6 1.9184 -0.5483 3.6274 15 8 2.6193 -1.5394 3.6754 16 6 1.4585 0.0915 4.8754 17 6 1.7566 -0.3398 6.1879 18 6 1.1526 0.5077 7.0452 19 7 0.4894 1.4465 6.3106 20 7 0.7008 1.1711 4.9605 21 6 -0.2926 2.5378 6.9027 22 6 -0.5715 2.1788 8.3691 23 6 0.7272 1.7061 9.0306 24 8 1.1619 0.4895 8.4054 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.7089 1.1613 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 2.3596 -1.1947 6.4559 35 1 -1.2342 2.6501 6.3651 36 1 0.2738 3.4676 6.8520 37 1 -1.3138 1.3819 8.4138 38 1 -0.9481 3.0572 8.8933 39 1 0.5512 1.5273 10.0913 40 1 1.4951 2.4705 8.9123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764070653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:22 Heat of formation + Delta-G solvation = -42.001700 kcal Electronic energy + Delta-G solvation = -23538.988247 eV Core-core repulsion = 19935.440472 eV Total energy + Delta-G solvation = -3603.547775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99664 -39.78153 -38.63225 -36.48608 -35.02591 -34.76737 -31.46126 -31.05427 -29.66332 -27.15366 -25.77313 -25.53135 -25.12383 -24.05512 -22.88033 -20.28408 -20.07285 -18.79348 -18.46083 -17.09376 -16.49402 -16.19446 -15.84008 -15.71660 -15.50169 -15.24496 -15.08938 -14.62725 -14.42101 -13.65629 -13.11909 -13.06205 -12.78302 -12.68776 -12.07337 -11.79219 -11.75469 -11.63992 -11.39636 -11.15009 -10.92315 -10.91585 -10.65879 -10.36474 -10.33797 -10.09611 -9.82698 -9.39857 -9.30432 -9.26154 -8.68907 -8.63955 -8.32170 -5.96543 -4.08103 1.23380 1.87697 1.98037 2.58070 3.26656 3.31779 3.37916 3.38485 3.43245 3.73419 3.93886 4.30987 4.34643 4.43632 4.67542 4.74837 4.89947 5.01438 5.20051 5.24210 5.29727 5.45806 5.67282 5.76833 6.12039 6.16814 6.23527 6.53662 6.79777 6.96778 7.05280 7.06577 7.23548 7.25437 7.25968 7.47771 7.70033 7.75596 8.12281 8.20208 8.28711 8.45317 8.91921 9.57085 11.04645 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.038060 B = 0.003070 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.503050 B = 9119.232699 C = 9632.430245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.082 3.918 13 O -0.330 6.330 14 C 0.542 3.458 15 O -0.501 6.501 16 C 0.071 3.929 17 C -0.224 4.224 18 C 0.259 3.741 19 N -0.395 5.395 20 N -0.207 5.207 21 C 0.127 3.873 22 C -0.175 4.175 23 C 0.049 3.951 24 O -0.285 6.285 25 H 0.018 0.982 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.083 0.917 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.168 0.832 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 5.295 23.256 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.071 3.929 3 C -0.188 4.188 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.010 3.990 13 O -0.244 6.244 14 C 0.383 3.617 15 O -0.388 6.388 16 C -0.095 4.095 17 C -0.254 4.254 18 C 0.093 3.907 19 N -0.193 5.193 20 N -0.038 5.038 21 C 0.006 3.994 22 C -0.214 4.214 23 C -0.027 4.027 24 O -0.193 6.193 25 H 0.037 0.963 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.186 0.814 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.898 5.892 22.663 23.739 hybrid contribution 0.650 -0.901 -0.324 1.157 sum -3.248 4.991 22.340 23.119 Atomic orbital electron populations 1.21772 0.97280 0.98948 1.00764 1.18243 0.93483 0.93108 0.88105 1.21771 0.98044 0.98180 1.00766 1.20947 1.31918 1.12266 0.89792 0.92434 1.24855 0.94846 0.94900 0.98756 1.69840 1.36422 1.22560 1.23221 0.86542 0.79290 0.79352 0.82505 1.20668 1.21205 1.19886 1.23796 0.98417 0.95942 0.80858 1.86674 1.68409 1.55193 1.14152 1.19550 0.77426 0.81290 0.83415 1.90834 1.35369 1.24621 1.87937 1.20988 1.00550 0.95489 0.92502 1.20133 1.10997 1.06074 0.88158 1.19364 0.95910 0.92768 0.82613 1.49474 1.41179 1.24445 1.04209 1.77936 1.18269 1.15720 0.91885 1.22001 0.97005 0.87712 0.92656 1.22653 0.99191 1.04918 0.94598 1.23128 0.95572 0.85799 0.98163 1.86654 1.83479 1.36775 1.12379 0.96276 0.89784 0.95852 0.95847 0.89785 0.96266 0.92955 0.92197 0.92207 0.81430 0.87506 0.88885 0.89118 0.87015 0.86179 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.11 37.16 0.30 -2.96 16 2 C 0.07 1.80 0.58 -155.66 -0.09 1.71 16 3 C -0.13 -3.25 8.11 37.16 0.30 -2.95 16 4 C -0.51 -13.93 8.01 -34.44 -0.28 -14.21 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.85 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.43 9.35 55.43 0.52 -23.91 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.08 1.91 4.27 37.16 0.16 2.07 16 13 O -0.33 -7.23 8.88 -40.58 -0.36 -7.59 16 14 C 0.54 10.90 7.97 34.55 0.28 11.17 16 15 O -0.50 -10.68 16.69 -19.26 -0.32 -11.00 16 16 C 0.07 1.23 7.13 -82.73 -0.59 0.64 16 17 C -0.22 -3.32 10.58 -39.61 -0.42 -3.74 16 18 C 0.26 3.29 7.57 -16.72 -0.13 3.17 16 19 N -0.39 -4.96 4.08 -60.93 -0.25 -5.21 16 20 N -0.21 -3.46 12.67 33.42 0.42 -3.04 16 21 C 0.13 0.91 7.41 -3.64 -0.03 0.88 16 22 C -0.18 -0.73 6.16 -26.34 -0.16 -0.90 16 23 C 0.05 0.25 7.00 37.27 0.26 0.52 16 24 O -0.29 -2.87 10.65 -19.83 -0.21 -3.08 16 25 H 0.02 0.44 7.68 -51.93 -0.40 0.04 16 26 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 30 H 0.02 0.44 7.68 -51.93 -0.40 0.04 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -32.21 334.24 -6.29 -38.50 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.62 Total: -2.98 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.49 Total: -2.84 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.69 Total: -32.15 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.89 Total: -21.67 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.21 -6.29 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764070653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.503 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds