Wall clock time and date at job start Tue Mar 31 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 C 1.50693 * 109.46990 * 239.99889 * 2 1 3 5 5 H 1.08003 * 119.99764 * 239.99986 * 4 2 1 6 6 C 1.37874 * 120.00133 * 59.99998 * 4 2 1 7 7 N 1.31511 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46787 * 89.99917 * 8 6 4 10 10 H 1.48499 * 109.47127 * 210.00005 * 8 6 4 11 11 H 1.48495 * 109.47045 * 330.00237 * 8 6 4 12 12 C 1.53001 * 109.47089 * 119.99524 * 2 1 3 13 13 O 1.45202 * 109.47151 * 300.00464 * 12 2 1 14 14 C 1.34732 * 116.99693 * 180.02562 * 13 12 2 15 15 O 1.21493 * 120.00025 * 359.97438 * 14 13 12 16 16 C 1.47595 * 119.99927 * 180.27283 * 14 13 12 17 17 C 1.41336 * 125.95871 * 179.72437 * 16 14 13 18 18 C 1.34841 * 107.70601 * 179.97438 * 17 16 14 19 19 N 1.36409 * 107.93542 * 0.11047 * 18 17 16 20 20 N 1.32169 * 125.95745 * 359.41398 * 16 14 13 21 21 C 1.46729 * 123.62092 * 179.77176 * 19 18 17 22 22 C 1.53529 * 107.95877 * 343.02965 * 21 19 18 23 23 C 1.53225 * 109.29690 * 47.29545 * 22 21 19 24 24 O 1.36028 * 128.62856 * 180.16394 * 18 17 16 25 25 H 1.09005 * 109.47323 * 300.00329 * 1 2 3 26 26 H 1.09001 * 109.46957 * 60.00059 * 1 2 3 27 27 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47110 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47234 * 299.99771 * 3 2 1 30 30 H 1.09005 * 109.47823 * 59.99978 * 3 2 1 31 31 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47123 * 179.97438 * 12 2 1 33 33 H 1.09004 * 109.46684 * 59.99783 * 12 2 1 34 34 H 1.07995 * 126.14600 * 359.96021 * 17 16 14 35 35 H 1.09003 * 109.76124 * 223.41346 * 21 19 18 36 36 H 1.09000 * 109.80376 * 102.67403 * 21 19 18 37 37 H 1.08998 * 109.49859 * 287.34340 * 22 21 19 38 38 H 1.09001 * 109.49593 * 167.23891 * 22 21 19 39 39 H 1.09004 * 109.50076 * 175.45859 * 23 22 21 40 40 H 1.08990 * 109.51034 * 55.33905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0366 2.4348 14 6 1.9184 -0.5483 3.6274 15 8 2.6193 -1.5394 3.6754 16 6 1.4585 0.0915 4.8754 17 6 1.7566 -0.3398 6.1879 18 6 1.1526 0.5077 7.0452 19 7 0.4894 1.4465 6.3106 20 7 0.7008 1.1711 4.9605 21 6 -0.2926 2.5378 6.9027 22 6 -0.5715 2.1788 8.3691 23 6 0.7272 1.7061 9.0306 24 8 1.1619 0.4895 8.4054 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.7089 1.1613 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 2.3596 -1.1947 6.4559 35 1 -1.2342 2.6501 6.3651 36 1 0.2738 3.4676 6.8520 37 1 -1.3138 1.3819 8.4138 38 1 -0.9481 3.0572 8.8933 39 1 0.5512 1.5273 10.0913 40 1 1.4951 2.4705 8.9123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764070653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:21 Heat of formation + Delta-G solvation = -62.425724 kcal Electronic energy + Delta-G solvation = -23539.873899 eV Core-core repulsion = 19935.440472 eV Total energy + Delta-G solvation = -3604.433427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.98991 -41.33223 -39.55455 -38.27996 -36.64524 -35.70996 -33.29566 -32.16060 -30.68502 -28.24882 -27.57815 -27.37866 -26.94386 -25.22571 -23.89454 -21.54472 -20.95156 -20.68186 -19.55996 -18.28112 -17.82025 -17.63116 -17.37512 -17.10526 -16.75062 -16.41340 -16.23033 -15.76876 -15.20869 -14.99212 -14.72545 -14.69895 -14.36298 -13.67548 -13.49876 -13.30353 -13.14432 -12.84014 -12.66866 -12.61763 -12.46023 -12.33528 -12.13724 -12.12693 -11.98319 -11.86419 -11.74807 -11.29129 -11.23421 -10.73718 -10.40063 -10.37197 -9.66987 -8.03224 -6.21771 -0.05543 0.87860 0.93870 1.44942 1.45350 1.50782 1.57541 1.94585 2.16685 2.46953 2.99794 3.20166 3.51657 3.56990 3.92151 3.97776 4.08933 4.24835 4.26918 4.30925 4.40133 4.52437 4.52903 4.60668 4.65989 4.82649 4.93472 5.01597 5.04626 5.17836 5.19971 5.23172 5.29913 5.48232 5.63077 5.64866 6.05907 6.09901 6.12975 6.18352 6.37057 6.65573 6.83204 7.46183 8.96882 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.038060 B = 0.003070 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.503050 B = 9119.232699 C = 9632.430245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.063 3.937 3 C -0.118 4.118 4 C -0.533 4.533 5 H 0.053 0.947 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.093 3.907 13 O -0.339 6.339 14 C 0.543 3.457 15 O -0.520 6.520 16 C 0.046 3.954 17 C -0.242 4.242 18 C 0.276 3.724 19 N -0.381 5.381 20 N -0.237 5.237 21 C 0.107 3.893 22 C -0.163 4.163 23 C 0.035 3.965 24 O -0.293 6.293 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.172 0.828 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 6.202 25.406 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.020 3.980 13 O -0.253 6.253 14 C 0.386 3.614 15 O -0.408 6.408 16 C -0.117 4.117 17 C -0.272 4.272 18 C 0.109 3.891 19 N -0.181 5.181 20 N -0.070 5.070 21 C -0.011 4.011 22 C -0.201 4.201 23 C -0.039 4.039 24 O -0.200 6.200 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.190 0.810 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.441 6.813 24.842 26.139 hybrid contribution 0.740 -1.057 -0.781 1.508 sum -3.700 5.756 24.061 25.015 Atomic orbital electron populations 1.21620 0.97240 0.98628 1.00101 1.18266 0.93546 0.93247 0.88721 1.21618 0.97838 0.98021 1.00106 1.21199 1.32404 1.12555 0.90959 0.92872 1.25543 0.94947 0.95538 1.01260 1.69953 1.36808 1.23327 1.23863 0.85598 0.78755 0.78344 0.79163 1.20243 1.20705 1.19650 1.23457 0.98070 0.95509 0.81013 1.86656 1.68763 1.55359 1.14547 1.19963 0.76842 0.81073 0.83540 1.90804 1.36314 1.25514 1.88149 1.20662 1.02436 0.96716 0.91900 1.20217 1.12195 1.07158 0.87628 1.19257 0.94380 0.91615 0.83858 1.49874 1.40358 1.24978 1.02852 1.77807 1.18762 1.15760 0.94678 1.22637 0.97023 0.87023 0.94406 1.22695 0.98470 1.06561 0.92379 1.23650 0.96342 0.84412 0.99504 1.86689 1.83454 1.39452 1.10408 0.95485 0.91667 0.95951 0.95921 0.91673 0.95467 0.92824 0.92459 0.92474 0.81007 0.86808 0.86927 0.89575 0.82779 0.82852 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.11 71.98 0.58 -5.42 16 2 C 0.06 3.22 0.58 -52.93 -0.03 3.19 16 3 C -0.12 -5.99 8.11 71.98 0.58 -5.41 16 4 C -0.53 -29.36 8.01 25.60 0.21 -29.15 16 5 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 6 C 0.03 1.47 5.15 84.65 0.44 1.90 16 7 N -0.90 -50.23 9.35 21.45 0.20 -50.03 16 8 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 C 0.09 4.37 4.27 71.98 0.31 4.68 16 13 O -0.34 -15.15 8.88 -56.42 -0.50 -15.65 16 14 C 0.54 22.43 7.97 70.29 0.56 22.99 16 15 O -0.52 -22.80 16.69 19.86 0.33 -22.47 16 16 C 0.05 1.64 7.13 42.33 0.30 1.94 16 17 C -0.24 -7.18 10.58 22.25 0.24 -6.95 16 18 C 0.28 6.65 7.57 83.20 0.63 7.28 16 19 N -0.38 -9.00 4.08 -457.15 -1.87 -10.86 16 20 N -0.24 -7.89 12.67 -48.19 -0.61 -8.50 16 21 C 0.11 1.23 7.41 86.51 0.64 1.87 16 22 C -0.16 -0.69 6.16 30.85 0.19 -0.50 16 23 C 0.03 0.22 7.00 72.06 0.50 0.73 16 24 O -0.29 -5.16 10.65 -93.87 -1.00 -6.16 16 25 H 0.03 1.27 7.68 -2.38 -0.02 1.26 16 26 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 3.55 6.07 -2.39 -0.01 3.53 16 30 H 0.03 1.28 7.68 -2.38 -0.02 1.26 16 31 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.17 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.15 -0.57 8.14 -2.39 -0.02 -0.58 16 39 H 0.15 0.03 8.14 -2.38 -0.02 0.01 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -70.58 334.24 4.77 -65.81 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.04 Total: 5.34 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.15 Total: -2.84 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -2.28 Total: -69.40 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -1.17 Total: -44.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.58 4.77 -65.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764070653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.387 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds