Wall clock time and date at job start Tue Mar 31 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 H 1.08992 * 109.47495 * 305.00569 * 3 2 1 5 5 C 1.50696 * 109.47245 * 184.99663 * 3 2 1 6 6 O 1.20821 * 120.00541 * 240.00760 * 5 3 2 7 7 O 1.34232 * 119.99768 * 60.00485 * 5 3 2 8 8 C 1.45192 * 117.00237 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47417 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47262 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47091 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99919 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00010 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99806 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46661 * 89.99833 * 15 13 11 17 17 H 1.48494 * 109.47024 * 209.99586 * 15 13 11 18 18 H 1.48499 * 109.46944 * 329.99844 * 15 13 11 19 19 C 1.50708 * 109.46652 * 65.00203 * 3 2 1 20 20 C 1.38242 * 119.97061 * 239.99985 * 19 3 2 21 21 C 1.38205 * 120.02001 * 180.02562 * 20 19 3 22 22 C 1.38455 * 119.97502 * 0.02562 * 21 20 19 23 23 F 1.35106 * 120.02277 * 180.02562 * 22 21 20 24 24 C 1.38458 * 119.95220 * 359.97438 * 22 21 20 25 25 C 1.38198 * 119.97324 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47127 * 299.99465 * 1 2 3 28 28 H 1.08999 * 109.46628 * 59.99761 * 1 2 3 29 29 H 1.09001 * 109.46647 * 240.00251 * 2 1 3 30 30 H 1.08995 * 109.46849 * 120.00697 * 2 1 3 31 31 H 1.08998 * 109.47495 * 300.00102 * 8 7 5 32 32 H 1.08997 * 109.47253 * 60.00050 * 8 7 5 33 33 H 1.09007 * 109.47094 * 299.99906 * 9 8 7 34 34 H 1.09001 * 109.47545 * 59.99673 * 9 8 7 35 35 H 1.09003 * 109.47010 * 299.99385 * 10 9 8 36 36 H 1.08997 * 109.47537 * 59.99745 * 10 9 8 37 37 H 0.96998 * 119.99765 * 179.97438 * 14 13 11 38 38 H 1.07994 * 119.98958 * 0.27574 * 20 19 3 39 39 H 1.08001 * 120.00504 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.01541 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 3.5420 1.4443 -0.1237 6 8 4.2192 1.9415 0.7446 7 8 4.1274 0.8934 -1.1987 8 6 5.5779 0.9316 -1.2515 9 6 6.0592 0.2619 -2.5401 10 6 7.5877 0.3016 -2.5954 11 6 8.0619 -0.3587 -3.8644 12 1 7.3447 -0.7663 -4.5615 13 6 9.4112 -0.4424 -4.1354 14 7 10.2844 0.0544 -3.2868 15 14 9.9989 -1.2615 -5.7081 16 1 10.0978 -0.2465 -6.7876 17 1 11.3328 -1.8725 -5.4793 18 1 9.0331 -2.3165 -6.1074 19 6 1.6414 2.1162 1.2878 20 6 0.8402 3.2424 1.2588 21 6 0.4744 3.8613 2.4392 22 6 0.9111 3.3533 3.6508 23 9 0.5537 3.9573 4.8053 24 6 1.7135 2.2253 3.6786 25 6 2.0781 1.6080 2.4971 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9150 1.9680 -1.2334 32 1 5.9869 0.4015 -0.3914 33 1 5.7222 -0.7746 -2.5587 34 1 5.6503 0.7923 -3.4000 35 1 7.9252 1.3379 -2.5767 36 1 7.9964 -0.2291 -1.7355 37 1 11.2336 -0.0048 -3.4773 38 1 0.4967 3.6363 0.3138 39 1 -0.1519 4.7409 2.4162 40 1 2.0551 1.8284 4.6231 41 1 2.7043 0.7284 2.5185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764668068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:47 Heat of formation + Delta-G solvation = -136.383058 kcal Electronic energy + Delta-G solvation = -22615.828010 eV Core-core repulsion = 18988.267591 eV Total energy + Delta-G solvation = -3627.560419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.12565 -40.79227 -39.20174 -36.51549 -35.35516 -33.98827 -31.71345 -31.43531 -30.69236 -28.10397 -26.72964 -23.58272 -23.50123 -22.75278 -21.93280 -20.45400 -20.07421 -17.96169 -17.60217 -16.77173 -16.59388 -16.18785 -16.16614 -15.81141 -15.48553 -14.84498 -14.49002 -14.33127 -13.99993 -13.81031 -13.52952 -13.49202 -12.84534 -12.60309 -12.33162 -12.22739 -12.10033 -12.02117 -11.81479 -11.50502 -11.17762 -11.04209 -10.98256 -10.67142 -10.64629 -10.40528 -10.29307 -9.74761 -9.52844 -9.34520 -9.18537 -8.84550 -8.40613 -6.05301 -4.08465 0.81456 0.98447 2.27914 2.78684 3.29673 3.35877 3.38260 3.40133 3.98798 4.17435 4.34937 4.42223 4.59306 4.63690 4.72244 4.90501 4.97405 5.05092 5.15556 5.29592 5.30712 5.45293 5.55075 5.59319 5.61403 5.65345 5.74164 5.81306 5.85074 5.93895 5.98523 6.00220 6.21455 6.46631 6.51311 6.60789 6.81821 6.95976 7.58137 7.68974 7.88996 7.93062 8.33889 8.97839 9.55944 11.06164 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.002488 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.095995 B =11251.425924 C =11820.243503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.040 4.040 4 H 0.117 0.883 5 C 0.459 3.541 6 O -0.503 6.503 7 O -0.355 6.355 8 C 0.068 3.932 9 C -0.108 4.108 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.080 4.080 20 C -0.079 4.079 21 C -0.156 4.156 22 C 0.098 3.902 23 F -0.142 7.142 24 C -0.153 4.153 25 C -0.056 4.056 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.151 3.752 10.817 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.059 4.059 4 H 0.135 0.865 5 C 0.301 3.699 6 O -0.391 6.391 7 O -0.272 6.272 8 C -0.005 4.005 9 C -0.146 4.146 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.081 4.081 20 C -0.097 4.097 21 C -0.175 4.175 22 C 0.079 3.921 23 F -0.121 7.121 24 C -0.172 4.172 25 C -0.074 4.074 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.721 3.933 11.133 25.605 hybrid contribution 0.644 -0.138 -0.504 0.829 sum -22.076 3.796 10.629 24.794 Atomic orbital electron populations 1.21771 0.94507 1.02231 1.02220 1.21575 0.96964 0.92715 1.03998 1.20033 0.89058 0.99519 0.97323 0.86500 1.23371 0.91402 0.75099 0.80012 1.90684 1.65708 1.42102 1.40591 1.86485 1.26053 1.71868 1.42746 1.23515 0.73697 1.01978 1.01289 1.21762 0.99972 0.99650 0.93223 1.19053 0.86957 0.97685 0.97638 1.21170 0.91804 1.37796 1.05219 0.92422 1.25035 0.96925 0.95604 0.96922 1.69963 1.01737 1.45754 1.35907 0.86544 0.78107 0.79648 0.83422 1.20600 1.21185 1.19801 1.19365 0.98800 0.96205 0.93699 1.20869 0.96798 0.94026 0.98016 1.21064 1.03296 1.02015 0.91099 1.17745 0.98892 0.93818 0.81665 1.91498 1.90316 1.82629 1.47609 1.21115 1.00065 0.96063 0.99953 1.20820 0.96493 0.99267 0.90809 0.92100 0.92412 0.92269 0.89584 0.91122 0.91540 0.91524 0.92134 0.92143 0.96258 0.96248 0.92871 0.84815 0.84655 0.84654 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.73 37.16 0.36 -0.63 16 2 C -0.12 -0.96 5.26 -26.73 -0.14 -1.11 16 3 C -0.04 -0.40 2.48 -92.92 -0.23 -0.63 16 4 H 0.12 0.93 7.87 -51.93 -0.41 0.52 16 5 C 0.46 6.54 7.12 36.00 0.26 6.80 16 6 O -0.50 -8.60 14.85 -18.75 -0.28 -8.87 16 7 O -0.36 -5.61 10.03 -39.26 -0.39 -6.01 16 8 C 0.07 1.23 5.47 37.16 0.20 1.43 16 9 C -0.11 -2.21 5.53 -26.73 -0.15 -2.35 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 12 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 15 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.08 -0.80 3.38 -104.61 -0.35 -1.15 16 20 C -0.08 -0.68 9.67 -39.59 -0.38 -1.06 16 21 C -0.16 -1.39 10.03 -39.51 -0.40 -1.78 16 22 C 0.10 1.00 7.30 -39.42 -0.29 0.72 16 23 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 24 C -0.15 -1.54 10.03 -39.51 -0.40 -1.93 16 25 C -0.06 -0.58 7.87 -39.59 -0.31 -0.90 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.76 8.00 -51.93 -0.42 0.34 16 30 H 0.07 0.59 7.23 -51.93 -0.38 0.22 16 31 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 32 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 38 H 0.13 0.82 7.94 -52.49 -0.42 0.41 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.34 7.48 -52.49 -0.39 0.94 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.58 352.89 -8.14 -39.72 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.16 Total: -3.53 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.38 Total: -15.52 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.67 Total: -14.88 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.58 -8.14 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764668068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.664 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds