Wall clock time and date at job start Tue Mar 31 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 H 1.08992 * 109.47495 * 305.00569 * 3 2 1 5 5 C 1.50696 * 109.47245 * 184.99663 * 3 2 1 6 6 O 1.20821 * 120.00541 * 240.00760 * 5 3 2 7 7 O 1.34232 * 119.99768 * 60.00485 * 5 3 2 8 8 C 1.45192 * 117.00237 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47417 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47262 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47091 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00046 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99919 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00010 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99806 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46661 * 89.99833 * 15 13 11 17 17 H 1.48494 * 109.47024 * 209.99586 * 15 13 11 18 18 H 1.48499 * 109.46944 * 329.99844 * 15 13 11 19 19 C 1.50708 * 109.46652 * 65.00203 * 3 2 1 20 20 C 1.38242 * 119.97061 * 239.99985 * 19 3 2 21 21 C 1.38205 * 120.02001 * 180.02562 * 20 19 3 22 22 C 1.38455 * 119.97502 * 0.02562 * 21 20 19 23 23 F 1.35106 * 120.02277 * 180.02562 * 22 21 20 24 24 C 1.38458 * 119.95220 * 359.97438 * 22 21 20 25 25 C 1.38198 * 119.97324 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47127 * 299.99465 * 1 2 3 28 28 H 1.08999 * 109.46628 * 59.99761 * 1 2 3 29 29 H 1.09001 * 109.46647 * 240.00251 * 2 1 3 30 30 H 1.08995 * 109.46849 * 120.00697 * 2 1 3 31 31 H 1.08998 * 109.47495 * 300.00102 * 8 7 5 32 32 H 1.08997 * 109.47253 * 60.00050 * 8 7 5 33 33 H 1.09007 * 109.47094 * 299.99906 * 9 8 7 34 34 H 1.09001 * 109.47545 * 59.99673 * 9 8 7 35 35 H 1.09003 * 109.47010 * 299.99385 * 10 9 8 36 36 H 1.08997 * 109.47537 * 59.99745 * 10 9 8 37 37 H 0.96998 * 119.99765 * 179.97438 * 14 13 11 38 38 H 1.07994 * 119.98958 * 0.27574 * 20 19 3 39 39 H 1.08001 * 120.00504 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.01541 * 179.97438 * 24 22 21 41 41 H 1.07999 * 119.98646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 3.5420 1.4443 -0.1237 6 8 4.2192 1.9415 0.7446 7 8 4.1274 0.8934 -1.1987 8 6 5.5779 0.9316 -1.2515 9 6 6.0592 0.2619 -2.5401 10 6 7.5877 0.3016 -2.5954 11 6 8.0619 -0.3587 -3.8644 12 1 7.3447 -0.7663 -4.5615 13 6 9.4112 -0.4424 -4.1354 14 7 10.2844 0.0544 -3.2868 15 14 9.9989 -1.2615 -5.7081 16 1 10.0978 -0.2465 -6.7876 17 1 11.3328 -1.8725 -5.4793 18 1 9.0331 -2.3165 -6.1074 19 6 1.6414 2.1162 1.2878 20 6 0.8402 3.2424 1.2588 21 6 0.4744 3.8613 2.4392 22 6 0.9111 3.3533 3.6508 23 9 0.5537 3.9573 4.8053 24 6 1.7135 2.2253 3.6786 25 6 2.0781 1.6080 2.4971 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9150 1.9680 -1.2334 32 1 5.9869 0.4015 -0.3914 33 1 5.7222 -0.7746 -2.5587 34 1 5.6503 0.7923 -3.4000 35 1 7.9252 1.3379 -2.5767 36 1 7.9964 -0.2291 -1.7355 37 1 11.2336 -0.0048 -3.4773 38 1 0.4967 3.6363 0.3138 39 1 -0.1519 4.7409 2.4162 40 1 2.0551 1.8284 4.6231 41 1 2.7043 0.7284 2.5185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764668068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:46 Heat of formation + Delta-G solvation = -151.308473 kcal Electronic energy + Delta-G solvation = -22616.475225 eV Core-core repulsion = 18988.267591 eV Total energy + Delta-G solvation = -3628.207634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.92199 -41.87409 -40.09665 -37.80505 -36.17217 -35.88190 -33.65581 -32.14503 -31.36924 -29.42139 -28.13421 -25.26223 -24.29016 -23.46657 -23.00318 -22.16055 -21.10076 -18.83804 -18.69279 -18.45923 -17.69365 -17.55972 -17.20855 -16.60876 -16.52172 -16.36327 -15.74764 -15.39594 -14.91068 -14.80853 -14.47953 -14.29723 -14.16393 -13.87965 -13.81001 -13.45407 -13.27756 -12.90873 -12.82498 -12.81317 -12.51025 -12.36164 -12.16393 -12.07316 -11.83981 -11.73035 -11.65152 -11.39878 -11.34501 -11.17667 -10.57521 -10.06193 -9.61236 -8.21953 -6.33510 0.04807 0.27362 1.13997 1.41744 1.43233 1.54268 1.65384 2.41342 2.61485 3.12120 3.24271 3.38431 3.59017 3.80259 3.90930 3.96815 4.01017 4.06800 4.12442 4.30243 4.39236 4.41350 4.51469 4.63045 4.80228 4.85740 4.88109 4.94445 4.96379 5.08398 5.13062 5.17512 5.21255 5.26044 5.42676 5.43546 5.50102 5.53572 5.63832 5.80206 5.88522 6.18959 6.69203 6.82910 7.36202 8.90334 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.002488 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.095995 B =11251.425924 C =11820.243503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.030 4.030 4 H 0.145 0.855 5 C 0.458 3.542 6 O -0.535 6.535 7 O -0.352 6.352 8 C 0.078 3.922 9 C -0.093 4.093 10 C 0.025 3.975 11 C -0.542 4.542 12 H 0.066 0.934 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.089 4.089 20 C -0.075 4.075 21 C -0.154 4.154 22 C 0.081 3.919 23 F -0.149 7.149 24 C -0.163 4.163 25 C -0.071 4.071 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.068 0.932 35 H -0.005 1.005 36 H -0.004 1.004 37 H 0.264 0.736 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.179 3.660 9.340 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.049 4.049 4 H 0.163 0.837 5 C 0.302 3.698 6 O -0.424 6.424 7 O -0.269 6.269 8 C 0.005 3.995 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.793 3.207 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.184 1.184 19 C -0.090 4.090 20 C -0.093 4.093 21 C -0.173 4.173 22 C 0.062 3.938 23 F -0.127 7.127 24 C -0.181 4.181 25 C -0.089 4.089 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.014 0.986 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.779 3.837 9.658 26.870 hybrid contribution 1.247 -0.077 0.031 1.249 sum -23.532 3.760 9.689 25.725 Atomic orbital electron populations 1.21731 0.92740 1.02878 1.02786 1.21590 0.98377 0.91505 1.03618 1.20172 0.85377 1.00963 0.98398 0.83706 1.24331 0.93068 0.73691 0.78750 1.90678 1.66789 1.43461 1.41456 1.86476 1.24276 1.72355 1.43764 1.23103 0.75466 1.01151 0.99812 1.21446 0.96336 1.00544 0.94710 1.18940 0.90583 0.95574 0.96107 1.21633 0.92421 1.37837 1.06097 0.91555 1.26023 0.97175 0.96190 1.00611 1.70101 1.02145 1.47126 1.38122 0.85388 0.77626 0.78842 0.78850 1.19715 1.20908 1.18438 1.19482 0.99322 0.96877 0.93296 1.21200 0.95813 0.93036 0.99220 1.21366 1.02916 1.02450 0.90522 1.17987 0.99531 0.94180 0.82083 1.91478 1.90437 1.82739 1.48096 1.21243 1.00277 0.96309 1.00305 1.20881 0.97001 0.99513 0.91467 0.91492 0.92503 0.90974 0.89854 0.91713 0.92179 0.92120 0.91353 0.91353 0.98635 0.98607 0.92701 0.81779 0.82443 0.83960 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.73 71.98 0.70 -0.83 16 2 C -0.11 -1.69 5.26 30.60 0.16 -1.53 16 3 C -0.03 -0.54 2.48 -12.28 -0.03 -0.57 16 4 H 0.15 1.78 7.87 -2.39 -0.02 1.76 16 5 C 0.46 12.63 7.12 71.23 0.51 13.13 16 6 O -0.53 -18.28 14.85 21.98 0.33 -17.96 16 7 O -0.35 -10.79 10.03 -51.44 -0.52 -11.30 16 8 C 0.08 2.83 5.47 71.98 0.39 3.23 16 9 C -0.09 -3.76 5.53 30.59 0.17 -3.59 16 10 C 0.03 1.31 4.97 29.85 0.15 1.46 16 11 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 12 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 13 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 14 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 15 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 19 C -0.09 -1.63 3.38 -19.86 -0.07 -1.70 16 20 C -0.08 -1.09 9.67 22.26 0.22 -0.87 16 21 C -0.15 -2.40 10.03 22.31 0.22 -2.18 16 22 C 0.08 1.60 7.30 22.37 0.16 1.76 16 23 F -0.15 -3.15 17.27 44.97 0.78 -2.37 16 24 C -0.16 -3.24 10.03 22.31 0.22 -3.01 16 25 C -0.07 -1.45 7.87 22.26 0.18 -1.28 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.63 7.38 -2.39 -0.02 0.61 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.31 8.00 -2.39 -0.02 1.29 16 30 H 0.06 1.04 7.23 -2.39 -0.02 1.02 16 31 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 32 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 33 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.16 1.33 7.94 -2.91 -0.02 1.30 16 39 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.12 2.62 7.48 -2.91 -0.02 2.60 16 Total: -1.00 -68.40 352.89 7.58 -60.82 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.01 Total: 7.48 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 3.68 Total: -25.81 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.19 Total: -29.26 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.40 7.58 -60.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764668068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.491 kcal (2) G-P(sol) polarization free energy of solvation -68.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds