Wall clock time and date at job start Tue Mar 31 2020 07:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46907 * 110.99769 * 306.04832 * 12 2 1 14 14 C 1.46896 * 111.00152 * 69.99914 * 12 2 1 15 15 C 1.53005 * 109.47355 * 169.99941 * 14 12 2 16 16 H 1.09000 * 109.46684 * 60.00282 * 15 14 12 17 17 O 1.42895 * 109.46944 * 300.00502 * 15 14 12 18 18 C 1.50701 * 109.47044 * 180.02562 * 15 14 12 19 19 C 1.38226 * 120.00028 * 84.72939 * 18 15 14 20 20 C 1.38234 * 120.00013 * 179.78384 * 19 18 15 21 21 C 1.38234 * 120.00025 * 0.46752 * 20 19 18 22 22 N 1.48018 * 119.99806 * 179.78980 * 21 20 19 23 23 O 1.21805 * 119.99671 * 179.97438 * 22 21 20 24 24 O 1.21797 * 120.00744 * 359.97360 * 22 21 20 25 25 C 1.38238 * 119.99652 * 359.76403 * 21 20 19 26 26 C 1.38225 * 119.99963 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47407 * 59.99898 * 13 12 2 32 32 H 1.09006 * 109.46770 * 179.97438 * 13 12 2 33 33 H 1.09003 * 109.46848 * 299.99626 * 13 12 2 34 34 H 1.09006 * 109.47466 * 290.00215 * 14 12 2 35 35 H 1.09000 * 109.46995 * 50.00413 * 14 12 2 36 36 H 0.96698 * 113.99875 * 299.99548 * 17 15 14 37 37 H 1.07997 * 120.00063 * 0.02562 * 19 18 15 38 38 H 1.08004 * 119.99979 * 180.25300 * 20 19 18 39 39 H 1.08001 * 119.99597 * 180.02562 * 25 21 20 40 40 H 1.08006 * 120.00099 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8276 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0082 12 7 2.0198 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4887 -0.5257 -3.5973 16 1 2.1391 -1.5474 -3.7459 17 8 3.8934 -0.5363 -3.3354 18 6 2.2155 0.2848 -4.8380 19 6 2.9790 1.4034 -5.1149 20 6 2.7313 2.1443 -6.2553 21 6 1.7139 1.7721 -7.1139 22 7 1.4457 2.5682 -8.3327 23 8 0.5495 2.2400 -9.0895 24 8 2.1211 3.5514 -8.5788 25 6 0.9473 0.6562 -6.8346 26 6 1.1978 -0.0871 -5.6964 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7086 1.1614 3.4844 31 1 0.3491 -1.9550 -1.3693 32 1 1.8134 -2.5258 -2.2045 33 1 1.7060 -2.6221 -0.4301 34 1 0.6815 0.1052 -2.6088 35 1 2.1026 1.1188 -2.2604 36 1 4.2735 0.3414 -3.1927 37 1 3.7715 1.6963 -4.4422 38 1 3.3305 3.0159 -6.4737 39 1 0.1527 0.3652 -7.5056 40 1 0.5986 -0.9587 -5.4779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776586384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:54 Heat of formation + Delta-G solvation = -17.187140 kcal Electronic energy + Delta-G solvation = -23356.220983 eV Core-core repulsion = 19753.749249 eV Total energy + Delta-G solvation = -3602.471735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.37186 -40.21545 -37.94886 -36.75797 -36.20233 -32.94349 -32.47481 -31.71093 -29.63632 -28.10340 -26.61172 -25.32537 -24.90386 -23.50409 -22.70818 -21.26996 -19.63330 -19.40527 -18.85598 -17.71996 -17.40091 -16.34542 -16.21685 -15.61126 -15.24944 -14.79789 -14.63305 -14.35033 -14.16945 -13.73262 -13.32928 -13.21721 -12.97894 -12.51303 -11.92662 -11.74433 -11.73346 -11.51803 -11.39254 -11.33794 -11.18625 -11.00600 -10.89942 -10.72337 -10.58496 -10.33312 -10.13135 -9.96297 -9.73275 -9.50604 -8.98709 -8.46056 -7.28804 -6.08648 -4.12637 -0.41599 0.62518 1.09638 1.19172 2.93576 3.27903 3.32525 3.35424 4.01931 4.05879 4.16140 4.31645 4.38003 4.59607 4.62550 4.91545 5.03782 5.06412 5.22178 5.25217 5.31375 5.40325 5.48992 5.70084 5.88723 5.92999 6.02019 6.10085 6.22398 6.24479 6.52791 6.68009 6.76702 6.97876 7.30113 7.43508 7.58058 7.62873 7.74562 8.00027 8.24914 8.46678 8.93217 9.52864 10.98485 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.002933 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.758212 B = 9542.961760 C = 9646.778876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.522 5.522 13 C 0.031 3.969 14 C 0.028 3.972 15 C 0.143 3.857 16 H 0.114 0.886 17 O -0.534 6.534 18 C -0.052 4.052 19 C -0.111 4.111 20 C -0.049 4.049 21 C -0.053 4.053 22 N 0.031 4.969 23 O -0.165 6.165 24 O -0.164 6.164 25 C -0.051 4.051 26 C -0.111 4.111 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.004 0.996 30 H 0.261 0.739 31 H 0.019 0.981 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.372 0.628 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -0.245 -16.231 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.246 5.246 13 C -0.118 4.118 14 C -0.101 4.101 15 C 0.083 3.917 16 H 0.132 0.868 17 O -0.339 6.339 18 C -0.053 4.053 19 C -0.129 4.129 20 C -0.068 4.068 21 C -0.136 4.136 22 N 0.549 4.451 23 O -0.380 6.380 24 O -0.379 6.379 25 C -0.070 4.070 26 C -0.130 4.130 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.220 0.780 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.652 -1.198 -15.505 15.639 hybrid contribution -0.793 0.589 0.491 1.103 sum 0.858 -0.609 -15.015 15.051 Atomic orbital electron populations 1.22426 1.00871 0.99488 1.00477 1.19327 0.89698 0.94394 0.85974 0.94494 1.21049 1.30665 1.12604 0.89503 0.91896 1.24930 0.95182 0.95121 0.99056 1.69866 1.37000 1.23036 1.23626 0.86561 0.79280 0.79587 0.81994 1.20173 1.21399 1.20345 1.62307 1.58676 1.02196 1.01387 1.22304 0.96286 0.91970 1.01210 1.22686 0.97656 0.98224 0.91539 1.21097 0.83218 0.98907 0.88514 0.86830 1.86672 1.19960 1.34003 1.93222 1.21384 0.93055 0.94390 0.96508 1.21008 1.00808 0.94418 0.96709 1.21036 0.94097 0.99629 0.92074 1.21124 1.04443 0.98114 0.89927 1.43642 0.99220 1.00360 1.01832 1.94534 1.24248 1.74126 1.45115 1.94536 1.47422 1.16625 1.79328 1.21047 0.97505 0.91236 0.97258 1.21089 0.98125 1.00732 0.93007 0.94834 0.89238 0.97680 0.92890 0.96291 0.93837 0.90672 0.94565 0.90926 0.77988 0.83383 0.82841 0.82905 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.22 37.16 0.31 -3.64 16 2 C 0.21 4.97 2.31 -68.86 -0.16 4.81 16 3 H 0.04 0.96 7.93 -51.93 -0.41 0.54 16 4 C -0.50 -13.08 7.97 -34.44 -0.27 -13.35 16 5 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.52 -10.05 4.57 -236.27 -1.08 -11.13 16 13 C 0.03 0.54 8.62 60.07 0.52 1.06 16 14 C 0.03 0.42 4.17 -3.82 -0.02 0.41 16 15 C 0.14 1.69 3.09 -27.88 -0.09 1.60 16 16 H 0.11 1.32 6.38 -51.93 -0.33 0.99 16 17 O -0.53 -6.87 13.00 -35.23 -0.46 -7.33 16 18 C -0.05 -0.51 5.00 -104.63 -0.52 -1.03 16 19 C -0.11 -0.97 9.33 -39.59 -0.37 -1.34 16 20 C -0.05 -0.46 9.56 -39.58 -0.38 -0.84 16 21 C -0.05 -0.57 6.85 -79.95 -0.55 -1.12 16 22 N 0.03 0.39 4.45 33.96 0.15 0.54 16 23 O -0.17 -2.19 18.45 -29.46 -0.54 -2.73 16 24 O -0.16 -2.18 18.45 -29.46 -0.54 -2.72 16 25 C -0.05 -0.47 9.56 -39.59 -0.38 -0.85 16 26 C -0.11 -0.97 9.68 -39.59 -0.38 -1.35 16 27 H 0.03 0.74 6.33 -51.93 -0.33 0.41 16 28 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 29 H 0.00 0.09 6.91 -51.93 -0.36 -0.27 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.02 0.33 6.21 -51.93 -0.32 0.01 16 32 H 0.04 0.65 6.30 -51.93 -0.33 0.32 16 33 H 0.07 1.47 6.86 -51.93 -0.36 1.11 16 34 H 0.04 0.55 7.06 -51.93 -0.37 0.18 16 35 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 36 H 0.37 3.66 7.39 45.56 0.34 3.99 16 37 H 0.15 0.98 6.62 -52.49 -0.35 0.64 16 38 H 0.15 1.20 7.61 -52.48 -0.40 0.80 16 39 H 0.15 1.18 7.61 -52.49 -0.40 0.78 16 40 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -29.90 331.44 -8.53 -38.43 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.27 Total: 2.45 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.39 Total: -14.18 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.30 Total: -34.65 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.55 Total: -12.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.90 -8.53 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776586384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.246 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds