Wall clock time and date at job start Tue Mar 31 2020 07:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 13 13 C 1.46907 * 110.99769 * 306.04832 * 12 2 1 14 14 C 1.46896 * 111.00152 * 69.99914 * 12 2 1 15 15 C 1.53005 * 109.47355 * 169.99941 * 14 12 2 16 16 H 1.09000 * 109.46684 * 60.00282 * 15 14 12 17 17 O 1.42895 * 109.46944 * 300.00502 * 15 14 12 18 18 C 1.50701 * 109.47044 * 180.02562 * 15 14 12 19 19 C 1.38226 * 120.00028 * 84.72939 * 18 15 14 20 20 C 1.38234 * 120.00013 * 179.78384 * 19 18 15 21 21 C 1.38234 * 120.00025 * 0.46752 * 20 19 18 22 22 N 1.48018 * 119.99806 * 179.78980 * 21 20 19 23 23 O 1.21805 * 119.99671 * 179.97438 * 22 21 20 24 24 O 1.21797 * 120.00744 * 359.97360 * 22 21 20 25 25 C 1.38238 * 119.99652 * 359.76403 * 21 20 19 26 26 C 1.38225 * 119.99963 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47407 * 59.99898 * 13 12 2 32 32 H 1.09006 * 109.46770 * 179.97438 * 13 12 2 33 33 H 1.09003 * 109.46848 * 299.99626 * 13 12 2 34 34 H 1.09006 * 109.47466 * 290.00215 * 14 12 2 35 35 H 1.09000 * 109.46995 * 50.00413 * 14 12 2 36 36 H 0.96698 * 113.99875 * 299.99548 * 17 15 14 37 37 H 1.07997 * 120.00063 * 0.02562 * 19 18 15 38 38 H 1.08004 * 119.99979 * 180.25300 * 20 19 18 39 39 H 1.08001 * 119.99597 * 180.02562 * 25 21 20 40 40 H 1.08006 * 120.00099 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8276 -0.4192 5.2204 11 1 1.8279 -2.5198 4.0082 12 7 2.0198 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4887 -0.5257 -3.5973 16 1 2.1391 -1.5474 -3.7459 17 8 3.8934 -0.5363 -3.3354 18 6 2.2155 0.2848 -4.8380 19 6 2.9790 1.4034 -5.1149 20 6 2.7313 2.1443 -6.2553 21 6 1.7139 1.7721 -7.1139 22 7 1.4457 2.5682 -8.3327 23 8 0.5495 2.2400 -9.0895 24 8 2.1211 3.5514 -8.5788 25 6 0.9473 0.6562 -6.8346 26 6 1.1978 -0.0871 -5.6964 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7086 1.1614 3.4844 31 1 0.3491 -1.9550 -1.3693 32 1 1.8134 -2.5258 -2.2045 33 1 1.7060 -2.6221 -0.4301 34 1 0.6815 0.1052 -2.6088 35 1 2.1026 1.1188 -2.2604 36 1 4.2735 0.3414 -3.1927 37 1 3.7715 1.6963 -4.4422 38 1 3.3305 3.0159 -6.4737 39 1 0.1527 0.3652 -7.5056 40 1 0.5986 -0.9587 -5.4779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776586384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:53 Heat of formation + Delta-G solvation = -36.490807 kcal Electronic energy + Delta-G solvation = -23357.058053 eV Core-core repulsion = 19753.749249 eV Total energy + Delta-G solvation = -3603.308805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.29061 -41.04814 -39.19998 -37.72206 -37.44541 -34.69760 -33.44878 -32.41446 -31.14585 -29.43346 -27.76756 -27.25514 -26.14622 -24.24744 -23.85636 -22.29477 -21.03590 -20.43535 -19.79449 -18.64833 -18.38743 -18.19191 -17.20133 -16.92874 -16.31270 -15.97398 -15.82830 -15.71626 -14.91153 -14.84360 -14.59657 -14.39695 -14.23852 -13.89277 -13.42253 -12.93931 -12.87729 -12.79619 -12.63866 -12.52080 -12.48694 -12.38874 -12.34469 -12.27375 -12.10226 -12.03744 -11.78386 -11.15066 -10.91298 -10.48127 -10.41430 -10.37642 -8.80756 -8.10436 -6.20540 -1.30135 -0.05003 0.22157 0.33868 1.43950 1.44800 1.52223 2.19561 2.43510 3.09402 3.19365 3.34201 3.42287 3.49357 3.73734 3.88270 3.90430 4.05054 4.21237 4.26142 4.55621 4.62217 4.64215 4.70482 4.74164 4.77714 4.79655 4.86773 4.90599 5.11399 5.14457 5.20344 5.26308 5.42892 5.53728 5.71549 5.80094 6.21802 6.43999 6.47688 6.70753 6.83509 6.93389 7.49034 8.95138 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032559 B = 0.002933 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.758212 B = 9542.961760 C = 9646.778876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.217 3.783 3 H 0.007 0.993 4 C -0.512 4.512 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.029 3.971 15 C 0.158 3.842 16 H 0.121 0.879 17 O -0.550 6.550 18 C -0.056 4.056 19 C -0.108 4.108 20 C -0.051 4.051 21 C -0.067 4.067 22 N 0.032 4.968 23 O -0.180 6.180 24 O -0.183 6.183 25 C -0.051 4.051 26 C -0.105 4.105 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.384 0.616 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -1.299 -16.875 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.110 3.890 3 H 0.025 0.975 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.256 5.256 13 C -0.114 4.114 14 C -0.100 4.100 15 C 0.098 3.902 16 H 0.138 0.862 17 O -0.357 6.357 18 C -0.057 4.057 19 C -0.126 4.126 20 C -0.070 4.070 21 C -0.150 4.150 22 N 0.546 4.454 23 O -0.393 6.393 24 O -0.395 6.395 25 C -0.070 4.070 26 C -0.123 4.123 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.186 0.814 38 H 0.183 0.817 39 H 0.184 0.816 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.932 -2.240 -16.183 16.451 hybrid contribution -0.857 0.909 0.666 1.416 sum 1.075 -1.331 -15.517 15.611 Atomic orbital electron populations 1.22222 1.00451 0.99328 0.99927 1.19047 0.89844 0.92839 0.87296 0.97531 1.21356 1.30366 1.12412 0.90936 0.92637 1.25643 0.95470 0.95798 1.01731 1.69993 1.38006 1.24200 1.23994 0.85660 0.78735 0.78710 0.78814 1.19884 1.21256 1.19740 1.62149 1.58907 1.02957 1.01608 1.22285 0.96471 0.91011 1.01650 1.22759 0.98428 0.97823 0.90999 1.20875 0.82376 0.99224 0.87735 0.86154 1.86643 1.20392 1.35357 1.93277 1.21245 0.93870 0.94590 0.96042 1.21238 1.00967 0.93814 0.96605 1.21213 0.93843 1.00061 0.91869 1.21372 1.05617 0.98642 0.89376 1.43945 0.98837 1.00318 1.02301 1.94516 1.24616 1.74259 1.45924 1.94522 1.47714 1.17411 1.79898 1.21256 0.97545 0.90635 0.97603 1.21338 0.97673 1.01103 0.92191 0.94645 0.92300 0.95611 0.93063 0.96052 0.90563 0.93065 0.94210 0.91320 0.76607 0.81414 0.81748 0.81554 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.23 8.22 71.98 0.59 -6.63 16 2 C 0.22 10.18 2.31 44.17 0.10 10.28 16 3 H 0.01 0.36 7.93 -2.39 -0.02 0.34 16 4 C -0.51 -26.94 7.97 25.60 0.20 -26.74 16 5 H 0.06 2.94 7.10 -2.91 -0.02 2.92 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -51.45 11.32 21.45 0.24 -51.21 16 8 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.53 -19.85 4.57 -901.42 -4.12 -23.97 16 13 C 0.03 1.14 8.62 127.69 1.10 2.24 16 14 C 0.03 0.80 4.17 86.31 0.36 1.16 16 15 C 0.16 3.27 3.09 29.85 0.09 3.36 16 16 H 0.12 2.35 6.38 -2.39 -0.02 2.33 16 17 O -0.55 -12.75 13.00 -148.98 -1.94 -14.69 16 18 C -0.06 -0.93 5.00 -19.87 -0.10 -1.03 16 19 C -0.11 -1.62 9.33 22.27 0.21 -1.41 16 20 C -0.05 -0.84 9.56 22.27 0.21 -0.63 16 21 C -0.07 -1.32 6.85 36.37 0.25 -1.07 16 22 N 0.03 0.78 4.45 -46.46 -0.21 0.57 16 23 O -0.18 -4.66 18.45 18.88 0.35 -4.31 16 24 O -0.18 -4.80 18.45 18.89 0.35 -4.45 16 25 C -0.05 -0.82 9.56 22.27 0.21 -0.61 16 26 C -0.10 -1.49 9.68 22.27 0.22 -1.27 16 27 H 0.03 1.54 6.33 -2.39 -0.02 1.52 16 28 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 29 H 0.02 1.01 6.91 -2.39 -0.02 0.99 16 30 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.02 0.70 6.21 -2.39 -0.01 0.68 16 32 H 0.08 2.05 6.30 -2.38 -0.02 2.03 16 33 H 0.05 1.95 6.86 -2.39 -0.02 1.94 16 34 H 0.04 1.10 7.06 -2.38 -0.02 1.08 16 35 H 0.07 1.97 7.93 -2.39 -0.02 1.95 16 36 H 0.38 6.65 7.39 -74.06 -0.55 6.10 16 37 H 0.17 1.76 6.62 -2.91 -0.02 1.74 16 38 H 0.16 2.30 7.61 -2.91 -0.02 2.28 16 39 H 0.17 2.16 7.61 -2.91 -0.02 2.14 16 40 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -64.31 331.44 1.13 -63.18 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.53 Total: 11.54 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 3.90 Total: -21.26 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -4.08 Total: -74.61 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.24 Total: -23.45 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.31 1.13 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776586384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.690 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds