Wall clock time and date at job start Tue Mar 31 2020 07:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47212 * 2 1 4 4 C 1.50704 * 109.47060 * 240.00308 * 2 1 3 5 5 H 1.07995 * 119.99735 * 240.00142 * 4 2 1 6 6 C 1.37875 * 120.00005 * 59.99607 * 4 2 1 7 7 N 1.31513 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99916 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47224 * 60.00345 * 8 6 4 10 10 H 1.48507 * 109.47138 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47332 * 300.00264 * 8 6 4 12 12 N 1.46900 * 109.47027 * 120.00151 * 2 1 3 13 13 C 1.46902 * 110.99609 * 176.04571 * 12 2 1 14 14 C 1.46898 * 110.99918 * 299.99764 * 12 2 1 15 15 C 1.53001 * 109.46926 * 160.12921 * 14 12 2 16 16 H 1.08997 * 109.47240 * 305.31545 * 15 14 12 17 17 O 1.42908 * 109.47063 * 65.31045 * 15 14 12 18 18 C 1.50703 * 109.47216 * 185.30799 * 15 14 12 19 19 C 1.38231 * 119.99827 * 279.72982 * 18 15 14 20 20 C 1.38243 * 119.99229 * 179.78881 * 19 18 15 21 21 C 1.38228 * 120.00189 * 0.46243 * 20 19 18 22 22 N 1.48022 * 119.99892 * 179.79268 * 21 20 19 23 23 O 1.21797 * 120.00103 * 179.97438 * 22 21 20 24 24 O 1.21799 * 119.99919 * 359.97438 * 22 21 20 25 25 C 1.38228 * 120.00289 * 359.76690 * 21 20 19 26 26 C 1.38236 * 120.00120 * 0.02562 * 25 21 20 27 27 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46914 * 299.99859 * 1 2 3 29 29 H 1.09000 * 109.46790 * 59.99754 * 1 2 3 30 30 H 0.97000 * 120.00073 * 179.97438 * 7 6 4 31 31 H 1.09008 * 109.46865 * 190.11386 * 13 12 2 32 32 H 1.08994 * 109.47079 * 70.11391 * 13 12 2 33 33 H 1.08999 * 109.47007 * 310.10616 * 13 12 2 34 34 H 1.08998 * 109.47153 * 280.13017 * 14 12 2 35 35 H 1.09000 * 109.46863 * 40.13395 * 14 12 2 36 36 H 0.96696 * 113.99471 * 59.99558 * 17 15 14 37 37 H 1.07996 * 120.00464 * 0.02562 * 19 18 15 38 38 H 1.08000 * 119.99508 * 180.25836 * 20 19 18 39 39 H 1.07998 * 120.00649 * 180.02562 * 25 21 20 40 40 H 1.08001 * 120.00339 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1208 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 6 1.6362 -0.9994 3.5986 16 1 1.0902 -1.9115 3.3575 17 8 3.0060 -1.3174 3.8530 18 6 1.0328 -0.3614 4.8233 19 6 1.7698 0.5417 5.5663 20 6 1.2146 1.1301 6.6873 21 6 -0.0738 0.8083 7.0706 22 7 -0.6665 1.4349 8.2735 23 8 -1.8020 1.1517 8.6110 24 8 -0.0187 2.2339 8.9259 25 6 -0.8091 -0.0984 6.3303 26 6 -0.2556 -0.6837 5.2069 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7094 1.1619 -3.4843 31 1 3.8097 -1.4617 1.9856 32 1 3.9194 0.1934 1.3398 33 1 3.8135 -1.1912 0.2263 34 1 2.1715 0.8451 2.6228 35 1 0.5141 0.2894 2.2868 36 1 3.5529 -0.5514 4.0745 37 1 2.7778 0.7904 5.2690 38 1 1.7889 1.8389 7.2655 39 1 -1.8159 -0.3496 6.6294 40 1 -0.8299 -1.3924 4.6286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776586390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:03 Heat of formation + Delta-G solvation = -16.432904 kcal Electronic energy + Delta-G solvation = -23383.922259 eV Core-core repulsion = 19781.483231 eV Total energy + Delta-G solvation = -3602.439029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36726 -40.21909 -37.96191 -36.75359 -36.02682 -32.89045 -32.56907 -31.71451 -29.49281 -28.94155 -26.69029 -25.09010 -24.02482 -23.52395 -22.71201 -21.36453 -19.66579 -19.57469 -18.84973 -17.71518 -17.39650 -16.45342 -16.22170 -15.64387 -15.30381 -14.95292 -14.58947 -14.15528 -14.05076 -13.80102 -13.48838 -13.23845 -12.64290 -12.42767 -12.03530 -11.92366 -11.74178 -11.43012 -11.34301 -11.33318 -11.27270 -11.02922 -10.99471 -10.73393 -10.39377 -10.25696 -10.02415 -9.76248 -9.72450 -9.49977 -8.95911 -8.50637 -7.32678 -6.09847 -4.14669 -0.40911 0.63328 1.10350 1.19749 2.94485 3.26523 3.31345 3.33980 4.03091 4.05664 4.16860 4.27738 4.35928 4.60856 4.63043 4.90301 4.99304 5.18621 5.23501 5.25730 5.36201 5.42418 5.51626 5.70673 5.91973 5.93032 6.10650 6.22234 6.24365 6.37299 6.69839 6.81415 6.90849 7.04307 7.39008 7.44066 7.46889 7.59950 7.73317 8.07941 8.20812 8.47231 8.91508 9.50732 10.97054 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031844 B = 0.003002 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.072490 B = 9324.982083 C = 9747.425364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.211 3.789 3 H -0.003 1.003 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.529 5.529 13 C 0.025 3.975 14 C 0.023 3.977 15 C 0.146 3.854 16 H 0.124 0.876 17 O -0.542 6.542 18 C -0.051 4.051 19 C -0.113 4.113 20 C -0.051 4.051 21 C -0.053 4.053 22 N 0.031 4.969 23 O -0.164 6.164 24 O -0.165 6.165 25 C -0.051 4.051 26 C -0.107 4.107 27 H 0.036 0.964 28 H 0.007 0.993 29 H 0.086 0.914 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.003 0.997 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.086 0.914 36 H 0.368 0.632 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -0.866 16.269 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.105 3.895 3 H 0.014 0.986 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.254 5.254 13 C -0.123 4.123 14 C -0.106 4.106 15 C 0.086 3.914 16 H 0.141 0.859 17 O -0.347 6.347 18 C -0.052 4.052 19 C -0.132 4.132 20 C -0.070 4.070 21 C -0.136 4.136 22 N 0.549 4.451 23 O -0.379 6.379 24 O -0.380 6.380 25 C -0.070 4.070 26 C -0.126 4.126 27 H 0.055 0.945 28 H 0.025 0.975 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.022 0.978 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.215 0.785 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.003 -2.118 15.389 15.534 hybrid contribution 0.536 1.305 -0.418 1.471 sum 0.538 -0.813 14.971 15.003 Atomic orbital electron populations 1.21899 0.97840 0.99710 0.99822 1.19272 0.92219 0.92022 0.85978 0.98576 1.21100 1.31236 1.12408 0.89666 0.91762 1.24933 0.95141 0.95055 0.99083 1.69872 1.36801 1.22966 1.23656 0.86565 0.79102 0.79782 0.81994 1.20149 1.21334 1.20311 1.62040 1.10064 1.51942 1.01307 1.22545 0.87991 0.98588 1.03224 1.22799 1.02273 0.93878 0.91693 1.21201 0.82577 0.99370 0.88262 0.85852 1.86708 1.19118 1.37231 1.91649 1.21359 0.94292 0.93346 0.96251 1.20968 1.01124 0.96735 0.94361 1.21006 0.92120 0.97744 0.96098 1.21119 0.96663 1.04514 0.91264 1.43644 1.00540 0.99254 1.01619 1.94535 1.03473 1.66348 1.73560 1.94532 1.61677 1.29067 1.52751 1.21078 1.00624 0.92242 0.93067 1.21156 0.95092 1.00498 0.95806 0.94529 0.97459 0.89528 0.92850 0.91240 0.97841 0.90532 0.95374 0.89546 0.78460 0.83761 0.82947 0.82830 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.81 37.16 0.33 -2.76 16 2 C 0.21 5.02 2.06 -68.86 -0.14 4.88 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 4 C -0.51 -13.28 7.80 -34.44 -0.27 -13.55 16 5 H 0.06 1.69 6.45 -52.49 -0.34 1.35 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.53 -10.32 4.55 -236.28 -1.08 -11.39 16 13 C 0.02 0.45 8.94 60.07 0.54 0.99 16 14 C 0.02 0.35 4.65 -3.82 -0.02 0.33 16 15 C 0.15 1.72 3.43 -27.88 -0.10 1.62 16 16 H 0.12 1.54 8.00 -51.93 -0.42 1.13 16 17 O -0.54 -6.34 10.37 -35.23 -0.37 -6.71 16 18 C -0.05 -0.50 4.97 -104.62 -0.52 -1.02 16 19 C -0.11 -0.97 9.32 -39.58 -0.37 -1.34 16 20 C -0.05 -0.47 9.56 -39.58 -0.38 -0.84 16 21 C -0.05 -0.57 6.85 -79.95 -0.55 -1.11 16 22 N 0.03 0.39 4.45 33.96 0.15 0.55 16 23 O -0.16 -2.19 18.45 -29.46 -0.54 -2.73 16 24 O -0.17 -2.20 18.45 -29.46 -0.54 -2.74 16 25 C -0.05 -0.48 9.55 -39.59 -0.38 -0.86 16 26 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.01 0.13 6.04 -51.93 -0.31 -0.18 16 29 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.07 1.11 5.77 -51.92 -0.30 0.81 16 32 H 0.00 0.05 7.95 -51.93 -0.41 -0.36 16 33 H 0.08 1.56 5.93 -51.93 -0.31 1.25 16 34 H 0.03 0.41 7.87 -51.93 -0.41 0.01 16 35 H 0.09 1.37 5.53 -51.93 -0.29 1.08 16 36 H 0.37 3.11 7.50 45.56 0.34 3.45 16 37 H 0.14 0.90 6.78 -52.49 -0.36 0.55 16 38 H 0.15 1.17 7.61 -52.49 -0.40 0.78 16 39 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 40 H 0.15 1.10 8.04 -52.49 -0.42 0.68 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -29.88 331.12 -8.43 -38.30 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.31 Total: 1.67 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.33 Total: -13.53 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.30 Total: -34.95 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.45 Total: -12.18 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.88 -8.43 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776586390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.868 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds