Wall clock time and date at job start Tue Mar 31 2020 07:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47212 * 2 1 4 4 C 1.50704 * 109.47060 * 240.00308 * 2 1 3 5 5 H 1.07995 * 119.99735 * 240.00142 * 4 2 1 6 6 C 1.37875 * 120.00005 * 59.99607 * 4 2 1 7 7 N 1.31513 * 119.99912 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99916 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47224 * 60.00345 * 8 6 4 10 10 H 1.48507 * 109.47138 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47332 * 300.00264 * 8 6 4 12 12 N 1.46900 * 109.47027 * 120.00151 * 2 1 3 13 13 C 1.46902 * 110.99609 * 176.04571 * 12 2 1 14 14 C 1.46898 * 110.99918 * 299.99764 * 12 2 1 15 15 C 1.53001 * 109.46926 * 160.12921 * 14 12 2 16 16 H 1.08997 * 109.47240 * 305.31545 * 15 14 12 17 17 O 1.42908 * 109.47063 * 65.31045 * 15 14 12 18 18 C 1.50703 * 109.47216 * 185.30799 * 15 14 12 19 19 C 1.38231 * 119.99827 * 279.72982 * 18 15 14 20 20 C 1.38243 * 119.99229 * 179.78881 * 19 18 15 21 21 C 1.38228 * 120.00189 * 0.46243 * 20 19 18 22 22 N 1.48022 * 119.99892 * 179.79268 * 21 20 19 23 23 O 1.21797 * 120.00103 * 179.97438 * 22 21 20 24 24 O 1.21799 * 119.99919 * 359.97438 * 22 21 20 25 25 C 1.38228 * 120.00289 * 359.76690 * 21 20 19 26 26 C 1.38236 * 120.00120 * 0.02562 * 25 21 20 27 27 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46914 * 299.99859 * 1 2 3 29 29 H 1.09000 * 109.46790 * 59.99754 * 1 2 3 30 30 H 0.97000 * 120.00073 * 179.97438 * 7 6 4 31 31 H 1.09008 * 109.46865 * 190.11386 * 13 12 2 32 32 H 1.08994 * 109.47079 * 70.11391 * 13 12 2 33 33 H 1.08999 * 109.47007 * 310.10616 * 13 12 2 34 34 H 1.08998 * 109.47153 * 280.13017 * 14 12 2 35 35 H 1.09000 * 109.46863 * 40.13395 * 14 12 2 36 36 H 0.96696 * 113.99471 * 59.99558 * 17 15 14 37 37 H 1.07996 * 120.00464 * 0.02562 * 19 18 15 38 38 H 1.08000 * 119.99508 * 180.25836 * 20 19 18 39 39 H 1.07998 * 120.00649 * 180.02562 * 25 21 20 40 40 H 1.08001 * 120.00339 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1208 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 6 1.6362 -0.9994 3.5986 16 1 1.0902 -1.9115 3.3575 17 8 3.0060 -1.3174 3.8530 18 6 1.0328 -0.3614 4.8233 19 6 1.7698 0.5417 5.5663 20 6 1.2146 1.1301 6.6873 21 6 -0.0738 0.8083 7.0706 22 7 -0.6665 1.4349 8.2735 23 8 -1.8020 1.1517 8.6110 24 8 -0.0187 2.2339 8.9259 25 6 -0.8091 -0.0984 6.3303 26 6 -0.2556 -0.6837 5.2069 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7094 1.1619 -3.4843 31 1 3.8097 -1.4617 1.9856 32 1 3.9194 0.1934 1.3398 33 1 3.8135 -1.1912 0.2263 34 1 2.1715 0.8451 2.6228 35 1 0.5141 0.2894 2.2868 36 1 3.5529 -0.5514 4.0745 37 1 2.7778 0.7904 5.2690 38 1 1.7889 1.8389 7.2655 39 1 -1.8159 -0.3496 6.6294 40 1 -0.8299 -1.3924 4.6286 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776586390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:02 Heat of formation + Delta-G solvation = -35.387234 kcal Electronic energy + Delta-G solvation = -23384.744181 eV Core-core repulsion = 19781.483231 eV Total energy + Delta-G solvation = -3603.260950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.28890 -41.05434 -39.15171 -37.72045 -37.34257 -34.65592 -33.51300 -32.41755 -31.16718 -30.20574 -27.93864 -26.72733 -25.40043 -24.32186 -23.89647 -22.33275 -21.28990 -20.43471 -19.79148 -18.64630 -18.40865 -18.26202 -17.22374 -17.04789 -16.31499 -15.95412 -15.89124 -15.53777 -14.97224 -14.80355 -14.67925 -14.44027 -14.06469 -13.79248 -13.52272 -12.92839 -12.82174 -12.79677 -12.67753 -12.61745 -12.46252 -12.35912 -12.34265 -12.20962 -12.06112 -12.03404 -11.85225 -10.98684 -10.78456 -10.50766 -10.41382 -10.39832 -8.90488 -8.12109 -6.23230 -1.29784 -0.04586 0.22555 0.34143 1.42875 1.43912 1.51355 2.20203 2.41922 3.07267 3.17636 3.35066 3.43133 3.49212 3.69778 3.88206 3.91258 4.14028 4.20840 4.26439 4.57417 4.64044 4.66929 4.71490 4.74228 4.78260 4.87375 5.01398 5.03645 5.11737 5.19591 5.27210 5.39325 5.43873 5.51886 5.72570 5.80779 6.27081 6.39938 6.44257 6.70850 6.76632 6.92470 7.46182 8.93476 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031844 B = 0.003002 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.072490 B = 9324.982083 C = 9747.425364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.215 3.785 3 H -0.039 1.039 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.537 5.537 13 C 0.031 3.969 14 C 0.023 3.977 15 C 0.163 3.837 16 H 0.119 0.881 17 O -0.551 6.551 18 C -0.055 4.055 19 C -0.107 4.107 20 C -0.051 4.051 21 C -0.067 4.067 22 N 0.031 4.969 23 O -0.182 6.182 24 O -0.180 6.180 25 C -0.052 4.052 26 C -0.104 4.104 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.261 0.739 31 H 0.096 0.904 32 H 0.007 0.993 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.383 0.617 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -1.661 16.951 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 H -0.022 1.022 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.261 5.261 13 C -0.117 4.117 14 C -0.106 4.106 15 C 0.103 3.897 16 H 0.137 0.863 17 O -0.359 6.359 18 C -0.056 4.056 19 C -0.125 4.125 20 C -0.070 4.070 21 C -0.150 4.150 22 N 0.546 4.454 23 O -0.395 6.395 24 O -0.393 6.393 25 C -0.071 4.071 26 C -0.123 4.123 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.188 0.812 38 H 0.184 0.816 39 H 0.183 0.817 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.715 -2.909 16.111 16.387 hybrid contribution 0.366 1.559 -0.593 1.708 sum 1.080 -1.350 15.518 15.614 Atomic orbital electron populations 1.21704 0.97282 0.99419 0.99739 1.19049 0.92629 0.90092 0.87426 1.02200 1.21430 1.31016 1.12303 0.91013 0.92210 1.25677 0.95414 0.95748 1.01851 1.70003 1.37826 1.24181 1.24067 0.85636 0.78716 0.78761 0.78673 1.19677 1.21176 1.19752 1.61970 1.10793 1.51876 1.01421 1.22509 0.87307 0.99212 1.02674 1.22884 1.01709 0.94968 0.91027 1.20831 0.83002 0.98217 0.87620 0.86322 1.86671 1.19158 1.38471 1.91552 1.21208 0.94700 0.93889 0.95806 1.21233 1.02069 0.95689 0.93530 1.21219 0.91609 0.97847 0.96294 1.21367 0.97546 1.05277 0.90769 1.43946 1.00371 0.99030 1.02056 1.94522 1.04041 1.66752 1.74211 1.94515 1.61642 1.29671 1.53513 1.21249 1.01148 0.91816 0.92905 1.21362 0.94945 1.00408 0.95549 0.94722 0.94727 0.92460 0.92999 0.88588 0.97467 0.93249 0.94569 0.90210 0.76649 0.81204 0.81611 0.81723 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.81 71.98 0.63 -5.00 16 2 C 0.21 10.27 2.06 44.17 0.09 10.37 16 3 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 4 C -0.52 -27.49 7.80 25.60 0.20 -27.29 16 5 H 0.06 3.15 6.45 -2.91 -0.02 3.13 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -51.73 11.32 21.45 0.24 -51.48 16 8 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 N -0.54 -20.33 4.55 -901.44 -4.10 -24.43 16 13 C 0.03 1.09 8.94 127.69 1.14 2.23 16 14 C 0.02 0.64 4.65 86.30 0.40 1.04 16 15 C 0.16 3.39 3.43 29.85 0.10 3.49 16 16 H 0.12 2.64 8.00 -2.39 -0.02 2.62 16 17 O -0.55 -11.04 10.37 -148.98 -1.54 -12.58 16 18 C -0.05 -0.90 4.97 -19.86 -0.10 -1.00 16 19 C -0.11 -1.49 9.32 22.27 0.21 -1.28 16 20 C -0.05 -0.81 9.56 22.27 0.21 -0.59 16 21 C -0.07 -1.31 6.85 36.37 0.25 -1.06 16 22 N 0.03 0.78 4.45 -46.47 -0.21 0.57 16 23 O -0.18 -4.80 18.45 18.89 0.35 -4.45 16 24 O -0.18 -4.67 18.45 18.89 0.35 -4.33 16 25 C -0.05 -0.87 9.55 22.27 0.21 -0.66 16 26 C -0.10 -1.60 9.67 22.27 0.22 -1.38 16 27 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.34 6.04 -2.39 -0.01 1.33 16 29 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.10 2.84 5.77 -2.38 -0.01 2.83 16 32 H 0.01 0.23 7.95 -2.39 -0.02 0.21 16 33 H 0.05 1.99 5.93 -2.39 -0.01 1.98 16 34 H 0.04 0.97 7.87 -2.39 -0.02 0.96 16 35 H 0.08 2.36 5.53 -2.39 -0.01 2.35 16 36 H 0.38 4.99 7.50 -74.06 -0.56 4.43 16 37 H 0.17 1.43 6.78 -2.91 -0.02 1.41 16 38 H 0.17 2.15 7.61 -2.91 -0.02 2.13 16 39 H 0.17 2.32 7.61 -2.91 -0.02 2.30 16 40 H 0.17 1.96 8.04 -2.91 -0.02 1.93 16 Total: -1.00 -64.68 331.12 1.65 -63.03 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.52 Total: 9.15 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 4.02 Total: -20.07 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -4.07 Total: -75.34 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.85 Total: -21.36 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.68 1.65 -63.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776586390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.643 kcal (2) G-P(sol) polarization free energy of solvation -64.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds