Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 H 1.08992 * 109.47312 * 54.36523 * 3 2 1 5 5 C 1.50697 * 109.47315 * 174.37066 * 3 2 1 6 6 H 1.08001 * 120.00189 * 114.47945 * 5 3 2 7 7 C 1.37880 * 119.99937 * 294.48342 * 5 3 2 8 8 N 1.31511 * 119.99948 * 163.25512 * 7 5 3 9 9 Si 1.86799 * 120.00013 * 343.25269 * 7 5 3 10 10 H 1.48494 * 109.47344 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47189 * 300.00487 * 9 7 5 12 12 H 1.48506 * 109.46909 * 59.99835 * 9 7 5 13 13 O 1.45201 * 109.46889 * 294.36798 * 3 2 1 14 14 C 1.34232 * 116.99879 * 90.00068 * 13 3 2 15 15 O 1.20821 * 120.00277 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99754 * 180.02562 * 14 13 3 17 17 C 1.50693 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.38237 * 120.83027 * 89.99511 * 17 16 14 19 19 C 1.50694 * 120.40786 * 359.97438 * 18 17 16 20 20 N 1.32488 * 119.18019 * 180.02562 * 18 17 16 21 21 C 1.31790 * 120.96291 * 359.97438 * 20 18 17 22 22 C 1.50696 * 119.09636 * 180.02562 * 21 20 18 23 23 N 1.31768 * 121.81568 * 0.02562 * 21 20 18 24 24 C 1.32827 * 120.71590 * 359.66861 * 23 21 20 25 25 O 1.35519 * 120.51325 * 180.32246 * 24 23 21 26 26 H 1.08997 * 109.47111 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.46691 * 60.00484 * 1 2 3 28 28 H 1.08996 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47053 * 239.99612 * 2 1 3 30 30 H 1.08999 * 109.47499 * 119.99942 * 2 1 3 31 31 H 0.96993 * 120.00492 * 354.55699 * 8 7 5 32 32 H 1.09009 * 109.46975 * 299.99578 * 16 14 13 33 33 H 1.08999 * 109.47579 * 59.99781 * 16 14 13 34 34 H 1.08999 * 109.46839 * 90.00138 * 19 18 17 35 35 H 1.09000 * 109.46936 * 210.00052 * 19 18 17 36 36 H 1.08995 * 109.47449 * 329.99822 * 19 18 17 37 37 H 1.09007 * 109.47393 * 89.99469 * 22 21 20 38 38 H 1.08997 * 109.47318 * 209.99688 * 22 21 20 39 39 H 1.09001 * 109.46978 * 330.00221 * 22 21 20 40 40 H 0.96698 * 114.00065 * 270.28224 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 0.8352 5 6 3.5405 1.4447 0.1394 6 1 4.1576 1.8051 -0.6705 7 6 4.1257 0.9867 1.3008 8 7 5.4036 0.6765 1.3152 9 14 3.1034 0.8070 2.8538 10 1 3.9608 0.2995 3.9549 11 1 2.5413 2.1284 3.2322 12 1 1.9950 -0.1505 2.6087 13 8 1.6688 2.0870 -1.2470 14 6 0.4859 2.7207 -1.2769 15 8 -0.2163 2.7360 -0.2938 16 6 0.0332 3.4122 -2.5370 17 6 -1.3167 4.0414 -2.3075 18 6 -1.4239 5.3379 -1.8399 19 6 -0.1872 6.1486 -1.5495 20 7 -2.6272 5.8584 -1.6493 21 6 -3.7159 5.1591 -1.8993 22 6 -5.0633 5.7930 -1.6680 23 7 -3.6587 3.9207 -2.3459 24 6 -2.4885 3.3326 -2.5672 25 8 -2.4345 2.0610 -3.0327 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9163 0.6940 0.4920 32 1 0.7530 4.1855 -2.8058 33 1 -0.0374 2.6847 -3.3456 34 1 0.1094 6.6926 -2.4462 35 1 -0.3970 6.8565 -0.7477 36 1 0.6202 5.4830 -1.2445 37 1 -5.3901 6.2945 -2.5791 38 1 -5.7858 5.0228 -1.3982 39 1 -4.9886 6.5205 -0.8597 40 1 -2.4188 1.3883 -2.3383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = -93.627385 kcal Electronic energy + Delta-G solvation = -24312.386410 eV Core-core repulsion = 20706.599978 eV Total energy + Delta-G solvation = -3605.786433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56207 -39.86959 -37.87632 -36.34544 -34.99260 -33.67767 -32.93507 -31.99551 -30.70711 -29.20585 -27.77873 -26.48628 -23.33302 -22.69447 -22.22489 -21.01448 -19.68411 -18.91522 -18.23077 -17.87195 -17.15225 -16.16386 -15.88335 -15.60731 -14.99438 -14.67597 -14.22316 -13.97504 -13.51757 -13.44075 -13.32228 -13.07023 -12.79297 -12.63432 -12.62384 -12.53577 -12.29497 -12.13219 -11.94420 -11.68310 -11.41513 -10.98646 -10.80556 -10.61771 -10.40980 -10.14446 -10.03166 -9.72988 -9.63976 -9.42433 -9.20813 -8.90173 -8.50591 -6.69858 -4.32339 0.63268 0.84659 2.67271 3.07862 3.26011 3.33654 3.34258 3.49353 3.64420 3.75198 4.14622 4.31763 4.47601 4.62775 4.88282 5.01111 5.04638 5.30132 5.33386 5.37631 5.38054 5.43489 5.45886 5.62311 5.73769 5.78058 5.84538 5.85901 5.96022 6.19569 6.34936 6.50953 6.66983 6.71746 6.80375 7.07732 7.18399 7.28442 7.72730 7.94016 8.17219 8.35911 8.75461 9.34836 10.71341 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023636 B = 0.004289 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.371933 B = 6527.277613 C = 6759.379208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.202 3.798 4 H 0.039 0.961 5 C -0.609 4.609 6 H 0.070 0.930 7 C 0.044 3.956 8 N -0.891 5.891 9 Si 1.030 2.970 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.269 1.269 13 O -0.340 6.340 14 C 0.453 3.547 15 O -0.517 6.517 16 C -0.070 4.070 17 C -0.193 4.193 18 C 0.209 3.791 19 C -0.113 4.113 20 N -0.525 5.525 21 C 0.340 3.660 22 C -0.083 4.083 23 N -0.543 5.543 24 C 0.380 3.620 25 O -0.475 6.475 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.273 0.727 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 7.574 -7.273 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.646 4.646 6 H 0.088 0.912 7 C -0.163 4.163 8 N -0.524 5.524 9 Si 0.857 3.143 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.196 1.196 13 O -0.256 6.256 14 C 0.296 3.704 15 O -0.407 6.407 16 C -0.109 4.109 17 C -0.199 4.199 18 C 0.064 3.936 19 C -0.170 4.170 20 N -0.242 5.242 21 C 0.073 3.927 22 C -0.142 4.142 23 N -0.269 5.269 24 C 0.193 3.807 25 O -0.284 6.284 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -16.544 7.750 -5.750 19.152 hybrid contribution 0.700 -0.496 -1.372 1.619 sum -15.844 7.253 -7.122 18.825 Atomic orbital electron populations 1.21896 0.97592 0.99852 1.01160 1.22447 0.93716 0.99462 1.03049 1.20950 0.96548 0.88117 0.79585 0.94346 1.21937 0.88674 1.48806 1.05196 0.91216 1.25623 0.97095 0.92503 1.01100 1.70837 1.08019 1.41855 1.31645 0.84275 0.75727 0.77833 0.76464 1.20369 1.20476 1.19569 1.86546 1.33952 1.62258 1.42823 1.23160 0.80944 0.77041 0.89236 1.90621 1.55064 1.58541 1.36481 1.20094 0.93131 1.01459 0.96227 1.20978 0.95898 0.97146 1.05883 1.21495 0.93896 0.90359 0.87843 1.20881 0.92504 0.99995 1.03636 1.68127 0.98187 1.38206 1.19660 1.23019 0.95302 0.85340 0.89020 1.20578 0.89177 1.00849 1.03566 1.67792 1.29358 1.13174 1.16564 1.19153 0.87181 0.86654 0.87712 1.84620 1.95232 1.12470 1.36045 0.92737 0.94279 0.93912 0.91901 0.90271 0.91684 0.86445 0.86220 0.89129 0.89305 0.89759 0.89525 0.89540 0.89364 0.72907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.57 37.16 0.32 -2.40 16 2 C -0.15 -3.23 5.32 -26.73 -0.14 -3.37 16 3 C 0.20 4.85 1.83 -27.89 -0.05 4.80 16 4 H 0.04 0.97 5.83 -51.93 -0.30 0.67 16 5 C -0.61 -16.82 9.17 -34.44 -0.32 -17.14 16 6 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 7 C 0.04 1.22 5.31 -17.82 -0.09 1.12 16 8 N -0.89 -26.28 13.69 55.43 0.76 -25.52 16 9 Si 1.03 24.35 26.28 -169.99 -4.47 19.89 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -5.87 5.69 56.52 0.32 -5.55 16 13 O -0.34 -7.32 9.81 -39.26 -0.39 -7.71 16 14 C 0.45 8.20 6.12 36.01 0.22 8.43 16 15 O -0.52 -10.39 13.18 -18.75 -0.25 -10.64 16 16 C -0.07 -0.95 5.11 -29.04 -0.15 -1.09 16 17 C -0.19 -2.72 4.42 -104.20 -0.46 -3.18 16 18 C 0.21 2.87 6.82 -82.31 -0.56 2.31 16 19 C -0.11 -1.25 9.45 36.00 0.34 -0.91 16 20 N -0.52 -7.33 10.27 -7.05 -0.07 -7.40 16 21 C 0.34 4.53 7.64 -157.22 -1.20 3.33 16 22 C -0.08 -0.74 10.32 36.00 0.37 -0.37 16 23 N -0.54 -7.91 10.36 -10.78 -0.11 -8.02 16 24 C 0.38 5.48 7.81 -16.70 -0.13 5.35 16 25 O -0.48 -6.03 12.75 -18.25 -0.23 -6.27 16 26 H 0.05 1.04 7.83 -51.93 -0.41 0.64 16 27 H 0.04 0.67 6.04 -51.93 -0.31 0.36 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.78 4.77 -51.93 -0.25 1.53 16 31 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 32 H 0.12 1.32 6.82 -51.92 -0.35 0.96 16 33 H 0.12 1.43 7.62 -51.93 -0.40 1.04 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.01 6.54 -51.93 -0.34 0.67 16 37 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.41 4.00 9.06 45.56 0.41 4.41 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -33.03 332.42 -6.16 -39.19 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.56 Total: 4.61 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.85 Total: -3.14 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.57 Total: -40.94 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.87 Total: -24.62 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.47 Total: 19.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.03 -6.16 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.438 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds