Wall clock time and date at job start Tue Mar 31 2020 06:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 H 1.08992 * 109.47312 * 54.36523 * 3 2 1 5 5 C 1.50697 * 109.47315 * 174.37066 * 3 2 1 6 6 H 1.08001 * 120.00189 * 114.47945 * 5 3 2 7 7 C 1.37880 * 119.99937 * 294.48342 * 5 3 2 8 8 N 1.31511 * 119.99948 * 163.25512 * 7 5 3 9 9 Si 1.86799 * 120.00013 * 343.25269 * 7 5 3 10 10 H 1.48494 * 109.47344 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47189 * 300.00487 * 9 7 5 12 12 H 1.48506 * 109.46909 * 59.99835 * 9 7 5 13 13 O 1.45201 * 109.46889 * 294.36798 * 3 2 1 14 14 C 1.34232 * 116.99879 * 90.00068 * 13 3 2 15 15 O 1.20821 * 120.00277 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99754 * 180.02562 * 14 13 3 17 17 C 1.50693 * 109.47095 * 180.02562 * 16 14 13 18 18 C 1.38237 * 120.83027 * 89.99511 * 17 16 14 19 19 C 1.50694 * 120.40786 * 359.97438 * 18 17 16 20 20 N 1.32488 * 119.18019 * 180.02562 * 18 17 16 21 21 C 1.31790 * 120.96291 * 359.97438 * 20 18 17 22 22 C 1.50696 * 119.09636 * 180.02562 * 21 20 18 23 23 N 1.31768 * 121.81568 * 0.02562 * 21 20 18 24 24 C 1.32827 * 120.71590 * 359.66861 * 23 21 20 25 25 O 1.35519 * 120.51325 * 180.32246 * 24 23 21 26 26 H 1.08997 * 109.47111 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.46691 * 60.00484 * 1 2 3 28 28 H 1.08996 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47053 * 239.99612 * 2 1 3 30 30 H 1.08999 * 109.47499 * 119.99942 * 2 1 3 31 31 H 0.96993 * 120.00492 * 354.55699 * 8 7 5 32 32 H 1.09009 * 109.46975 * 299.99578 * 16 14 13 33 33 H 1.08999 * 109.47579 * 59.99781 * 16 14 13 34 34 H 1.08999 * 109.46839 * 90.00138 * 19 18 17 35 35 H 1.09000 * 109.46936 * 210.00052 * 19 18 17 36 36 H 1.08995 * 109.47449 * 329.99822 * 19 18 17 37 37 H 1.09007 * 109.47393 * 89.99469 * 22 21 20 38 38 H 1.08997 * 109.47318 * 209.99688 * 22 21 20 39 39 H 1.09001 * 109.46978 * 330.00221 * 22 21 20 40 40 H 0.96698 * 114.00065 * 270.28224 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 0.8352 5 6 3.5405 1.4447 0.1394 6 1 4.1576 1.8051 -0.6705 7 6 4.1257 0.9867 1.3008 8 7 5.4036 0.6765 1.3152 9 14 3.1034 0.8070 2.8538 10 1 3.9608 0.2995 3.9549 11 1 2.5413 2.1284 3.2322 12 1 1.9950 -0.1505 2.6087 13 8 1.6688 2.0870 -1.2470 14 6 0.4859 2.7207 -1.2769 15 8 -0.2163 2.7360 -0.2938 16 6 0.0332 3.4122 -2.5370 17 6 -1.3167 4.0414 -2.3075 18 6 -1.4239 5.3379 -1.8399 19 6 -0.1872 6.1486 -1.5495 20 7 -2.6272 5.8584 -1.6493 21 6 -3.7159 5.1591 -1.8993 22 6 -5.0633 5.7930 -1.6680 23 7 -3.6587 3.9207 -2.3459 24 6 -2.4885 3.3326 -2.5672 25 8 -2.4345 2.0610 -3.0327 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9163 0.6940 0.4920 32 1 0.7530 4.1855 -2.8058 33 1 -0.0374 2.6847 -3.3456 34 1 0.1094 6.6926 -2.4462 35 1 -0.3970 6.8565 -0.7477 36 1 0.6202 5.4830 -1.2445 37 1 -5.3901 6.2945 -2.5791 38 1 -5.7858 5.0228 -1.3982 39 1 -4.9886 6.5205 -0.8597 40 1 -2.4188 1.3883 -2.3383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:46 Heat of formation + Delta-G solvation = -118.188617 kcal Electronic energy + Delta-G solvation = -24313.451465 eV Core-core repulsion = 20706.599978 eV Total energy + Delta-G solvation = -3606.851488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.60350 -41.38484 -38.86019 -37.92473 -36.06714 -35.56012 -34.06223 -33.79072 -31.67186 -30.10821 -29.54372 -27.61735 -24.62550 -24.25205 -23.41757 -22.42505 -21.31108 -19.95989 -19.85987 -19.24282 -18.71923 -17.51718 -17.20380 -16.95320 -16.16442 -15.84771 -15.52385 -15.23186 -14.94006 -14.73668 -14.57128 -14.40310 -14.26597 -14.24118 -13.69147 -13.48356 -13.38002 -13.14000 -13.07910 -13.02634 -12.84660 -12.70438 -12.44521 -11.93887 -11.80694 -11.65576 -11.53864 -11.41454 -11.30971 -10.85406 -10.64046 -10.44857 -10.24539 -8.92616 -6.55711 -0.38830 -0.16976 1.23498 1.38754 1.43793 1.63258 1.91259 2.18493 2.35430 2.57406 2.84632 2.87908 3.18087 3.41688 3.62859 3.82188 4.03702 4.14480 4.16430 4.22967 4.35743 4.44201 4.45667 4.57587 4.60009 4.60194 4.70026 4.78465 4.86426 4.99024 5.04369 5.07075 5.09331 5.33173 5.38684 5.47160 5.79619 5.84962 5.95421 6.28456 6.38837 6.87829 6.93983 7.20764 8.48163 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023636 B = 0.004289 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.371933 B = 6527.277613 C = 6759.379208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.147 4.147 3 C 0.204 3.796 4 H 0.029 0.971 5 C -0.617 4.617 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.919 5.919 9 Si 1.064 2.936 10 H -0.276 1.276 11 H -0.271 1.271 12 H -0.238 1.238 13 O -0.355 6.355 14 C 0.455 3.545 15 O -0.535 6.535 16 C -0.057 4.057 17 C -0.208 4.208 18 C 0.201 3.799 19 C -0.112 4.112 20 N -0.538 5.538 21 C 0.332 3.668 22 C -0.081 4.081 23 N -0.562 5.562 24 C 0.373 3.627 25 O -0.477 6.477 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.261 0.739 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.959 7.909 -7.437 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C 0.150 3.850 4 H 0.047 0.953 5 C -0.655 4.655 6 H 0.052 0.948 7 C -0.199 4.199 8 N -0.553 5.553 9 Si 0.885 3.115 10 H -0.201 1.201 11 H -0.196 1.196 12 H -0.162 1.162 13 O -0.271 6.271 14 C 0.299 3.701 15 O -0.426 6.426 16 C -0.095 4.095 17 C -0.214 4.214 18 C 0.057 3.943 19 C -0.169 4.169 20 N -0.255 5.255 21 C 0.065 3.935 22 C -0.139 4.139 23 N -0.288 5.288 24 C 0.186 3.814 25 O -0.287 6.287 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -18.860 8.082 -5.939 21.361 hybrid contribution 1.393 -0.514 -1.421 2.055 sum -17.467 7.568 -7.360 20.409 Atomic orbital electron populations 1.21805 0.94735 1.01843 1.01218 1.22329 0.96215 0.97332 1.02603 1.20643 0.94063 0.89790 0.80502 0.95314 1.22093 0.90909 1.48247 1.04232 0.94803 1.26893 0.97262 0.91668 1.04091 1.70939 1.09129 1.44202 1.31063 0.83862 0.75499 0.79019 0.73168 1.20079 1.19643 1.16223 1.86522 1.36113 1.63054 1.41418 1.23966 0.79433 0.76118 0.90568 1.90609 1.55230 1.59057 1.37689 1.20133 0.93421 1.02040 0.93931 1.21003 0.95802 0.97475 1.07130 1.21934 0.94700 0.90629 0.87080 1.20952 0.91126 0.99736 1.05046 1.68231 0.98465 1.38477 1.20325 1.23851 0.96683 0.85119 0.87811 1.20738 0.87152 1.01200 1.04847 1.67891 1.29483 1.13862 1.17556 1.19382 0.87464 0.87155 0.87398 1.84589 1.95218 1.12294 1.36647 0.93482 0.93440 0.90940 0.92062 0.91065 0.93003 0.84078 0.84397 0.86381 0.88981 0.90767 0.87660 0.88713 0.88299 0.71566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.57 71.98 0.62 -4.12 16 2 C -0.15 -6.17 5.32 30.59 0.16 -6.00 16 3 C 0.20 9.75 1.83 29.85 0.05 9.81 16 4 H 0.03 1.44 5.83 -2.39 -0.01 1.43 16 5 C -0.62 -34.87 9.17 25.60 0.23 -34.63 16 6 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 7 C 0.00 0.10 5.31 84.66 0.45 0.55 16 8 N -0.92 -55.54 13.69 21.45 0.29 -55.25 16 9 Si 1.06 48.51 26.28 68.60 1.80 50.31 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.24 -9.60 5.69 99.48 0.57 -9.04 16 13 O -0.35 -15.08 9.81 -51.44 -0.50 -15.59 16 14 C 0.45 15.83 6.12 71.24 0.44 16.26 16 15 O -0.54 -20.78 13.18 21.98 0.29 -20.49 16 16 C -0.06 -1.42 5.11 29.10 0.15 -1.27 16 17 C -0.21 -5.48 4.42 -19.59 -0.09 -5.57 16 18 C 0.20 5.18 6.82 42.46 0.29 5.47 16 19 C -0.11 -2.27 9.45 71.23 0.67 -1.60 16 20 N -0.54 -14.12 10.27 -176.23 -1.81 -15.93 16 21 C 0.33 8.27 7.64 138.76 1.06 9.33 16 22 C -0.08 -1.27 10.32 71.23 0.73 -0.53 16 23 N -0.56 -15.48 10.36 -300.68 -3.12 -18.60 16 24 C 0.37 10.13 7.81 84.82 0.66 10.79 16 25 O -0.48 -11.23 12.75 -88.22 -1.12 -12.36 16 26 H 0.05 1.68 7.83 -2.39 -0.02 1.66 16 27 H 0.05 1.51 6.04 -2.39 -0.01 1.50 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 30 H 0.07 3.07 4.77 -2.39 -0.01 3.06 16 31 H 0.26 15.87 8.73 -92.71 -0.81 15.06 16 32 H 0.14 2.84 6.82 -2.38 -0.02 2.82 16 33 H 0.14 2.95 7.62 -2.39 -0.02 2.93 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.66 6.54 -2.39 -0.02 1.65 16 37 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.42 7.41 9.06 -74.06 -0.67 6.74 16 Total: -1.00 -72.08 332.42 1.50 -70.58 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.23 Total: 18.84 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.44 Total: -1.51 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -4.63 Total: -89.77 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.34 Total: -48.44 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.80 Total: 50.31 kcal Total: -72.08 1.50 -70.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.613 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds