Wall clock time and date at job start Tue Mar 31 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 H 1.08996 * 109.47294 * 305.00065 * 3 2 1 5 5 C 1.50702 * 109.46991 * 185.00076 * 3 2 1 6 6 H 1.07999 * 120.00290 * 239.99980 * 5 3 2 7 7 C 1.37874 * 120.00310 * 60.00207 * 5 3 2 8 8 N 1.31524 * 119.99669 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00513 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46950 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47185 * 209.99979 * 9 7 5 12 12 H 1.48496 * 109.46964 * 330.00266 * 9 7 5 13 13 O 1.45205 * 109.47245 * 65.00393 * 3 2 1 14 14 C 1.34227 * 116.99633 * 270.00025 * 13 3 2 15 15 O 1.20826 * 120.00236 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99737 * 179.97438 * 14 13 3 17 17 C 1.50706 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.38234 * 120.82168 * 270.27015 * 17 16 14 19 19 C 1.50704 * 120.41383 * 359.97438 * 18 17 16 20 20 N 1.32488 * 119.17482 * 180.27315 * 18 17 16 21 21 C 1.31785 * 120.96384 * 359.72291 * 20 18 17 22 22 C 1.50701 * 119.09279 * 180.02562 * 21 20 18 23 23 N 1.31770 * 121.81418 * 359.97438 * 21 20 18 24 24 C 1.32816 * 120.71846 * 0.02562 * 23 21 20 25 25 O 1.35512 * 120.51235 * 180.02562 * 24 23 21 26 26 H 1.09004 * 109.46990 * 299.99734 * 1 2 3 27 27 H 1.08997 * 109.47593 * 59.99772 * 1 2 3 28 28 H 1.09007 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47045 * 239.99727 * 2 1 3 30 30 H 1.09003 * 109.46937 * 120.00390 * 2 1 3 31 31 H 0.97004 * 119.99919 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47782 * 59.99882 * 16 14 13 33 33 H 1.09001 * 109.47168 * 299.99638 * 16 14 13 34 34 H 1.09007 * 109.46905 * 270.30216 * 19 18 17 35 35 H 1.09000 * 109.46701 * 30.30008 * 19 18 17 36 36 H 1.08997 * 109.47174 * 150.29942 * 19 18 17 37 37 H 1.09001 * 109.46851 * 269.97391 * 22 21 20 38 38 H 1.08997 * 109.47784 * 29.97422 * 22 21 20 39 39 H 1.09003 * 109.46957 * 149.97781 * 22 21 20 40 40 H 0.96700 * 114.00230 * 90.00135 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7603 11 1 6.3828 0.9223 -2.8174 12 1 6.5569 2.0737 -0.6902 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2193 2.7369 0.2657 16 6 0.0071 3.4215 2.5088 17 6 -1.3411 4.0487 2.2634 18 6 -1.4443 5.3413 1.7844 19 6 -0.2053 6.1501 1.4983 20 7 -2.6461 5.8624 1.5856 21 6 -3.7368 5.1651 1.8325 22 6 -5.0823 5.7993 1.5907 23 7 -3.6832 3.9283 2.2840 24 6 -2.5148 3.3378 2.5079 25 8 -2.4645 2.0656 2.9718 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0612 -2.9499 32 1 0.7240 4.1957 2.7823 33 1 -0.0719 2.6969 3.3192 34 1 0.0864 6.6973 2.3948 35 1 0.6035 5.4828 1.2007 36 1 -0.4097 6.8552 0.6926 37 1 -5.4140 6.3046 2.4977 38 1 -5.0024 6.5233 0.7799 39 1 -5.8038 5.0285 1.3197 40 1 -2.4437 1.3939 2.2764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:50 Heat of formation + Delta-G solvation = -94.963871 kcal Electronic energy + Delta-G solvation = -24211.295734 eV Core-core repulsion = 20605.451347 eV Total energy + Delta-G solvation = -3605.844387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47440 -39.65552 -37.78555 -36.13651 -34.88454 -33.58990 -32.85260 -31.47557 -30.59581 -29.13249 -27.52894 -26.36750 -23.43166 -23.10333 -22.12644 -20.73923 -19.52446 -18.82406 -18.13154 -17.16748 -16.75686 -16.03650 -15.54886 -15.40418 -14.92733 -14.67939 -14.32365 -14.05296 -13.48814 -13.38336 -13.10808 -12.91847 -12.81051 -12.56966 -12.45507 -12.23088 -11.99017 -11.78334 -11.51061 -11.39424 -11.23792 -11.03005 -10.75681 -10.69044 -10.33973 -10.33292 -9.91471 -9.79315 -9.45578 -9.34449 -9.11238 -8.89081 -8.51691 -6.24434 -4.31953 0.71708 0.92594 2.85971 3.16064 3.20672 3.26542 3.29620 3.48345 3.75502 3.82887 4.22641 4.29084 4.57594 4.71936 4.96776 5.07679 5.12099 5.35748 5.40050 5.44348 5.50235 5.52366 5.60546 5.74952 5.82356 5.91085 6.11541 6.17983 6.27416 6.35098 6.76758 6.85746 6.88152 7.07028 7.15986 7.27300 7.54928 7.65938 7.86559 8.01580 8.08418 8.53767 8.80964 9.33703 10.82219 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.003962 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.419834 B = 7065.005953 C = 7533.383464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.454 3.546 15 O -0.515 6.515 16 C -0.071 4.071 17 C -0.192 4.192 18 C 0.208 3.792 19 C -0.112 4.112 20 N -0.526 5.526 21 C 0.339 3.661 22 C -0.083 4.083 23 N -0.544 5.544 24 C 0.380 3.620 25 O -0.476 6.476 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.267 0.733 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 8.056 8.398 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.269 6.269 14 C 0.297 3.703 15 O -0.405 6.405 16 C -0.110 4.110 17 C -0.197 4.197 18 C 0.063 3.937 19 C -0.169 4.169 20 N -0.243 5.243 21 C 0.072 3.928 22 C -0.141 4.141 23 N -0.270 5.270 24 C 0.193 3.807 25 O -0.284 6.284 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -11.441 8.524 8.292 16.502 hybrid contribution 1.650 -0.987 -0.484 1.983 sum -9.791 7.537 7.807 14.616 Atomic orbital electron populations 1.21855 0.98571 0.99021 1.00424 1.22026 0.92512 0.99406 1.03498 1.20700 0.95080 0.88731 0.78512 0.93516 1.21037 0.89614 1.39146 1.06295 0.91275 1.24889 0.99289 0.94707 0.95030 1.69888 1.35436 1.37711 1.09484 0.86278 0.83807 0.78723 0.77378 1.20325 1.20965 1.19593 1.86484 1.33881 1.62247 1.44268 1.23014 0.81111 0.77175 0.89025 1.90631 1.55619 1.58506 1.35788 1.20101 0.92958 1.01352 0.96571 1.20993 0.95954 0.97136 1.05660 1.21484 0.93886 0.90405 0.87878 1.20874 0.92523 0.99982 1.03553 1.68113 0.98190 1.38113 1.19847 1.23001 0.95250 0.85416 0.89134 1.20569 0.89265 1.00827 1.03463 1.67777 1.29524 1.13150 1.16503 1.19145 0.87180 0.86624 0.87726 1.84603 1.95261 1.12481 1.36088 0.95266 0.92882 0.94682 0.87273 0.93857 0.92342 0.86614 0.86382 0.89223 0.89709 0.89380 0.89595 0.89397 0.89568 0.72801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.56 37.16 0.32 -2.59 16 2 C -0.14 -3.25 5.49 -26.73 -0.15 -3.40 16 3 C 0.22 5.64 2.25 -27.88 -0.06 5.58 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.13 8.90 -34.44 -0.31 -14.43 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.45 11.29 55.43 0.63 -23.82 16 9 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 O -0.35 -7.81 9.81 -39.25 -0.38 -8.19 16 14 C 0.45 8.61 6.07 36.00 0.22 8.83 16 15 O -0.52 -11.03 13.17 -18.75 -0.25 -11.28 16 16 C -0.07 -1.00 5.10 -29.03 -0.15 -1.15 16 17 C -0.19 -2.82 4.42 -104.20 -0.46 -3.28 16 18 C 0.21 2.97 6.82 -82.31 -0.56 2.41 16 19 C -0.11 -1.29 9.44 36.01 0.34 -0.95 16 20 N -0.53 -7.62 10.27 -7.05 -0.07 -7.69 16 21 C 0.34 4.71 7.64 -157.22 -1.20 3.51 16 22 C -0.08 -0.78 10.32 36.01 0.37 -0.41 16 23 N -0.54 -8.27 10.36 -10.78 -0.11 -8.38 16 24 C 0.38 5.75 7.81 -16.70 -0.13 5.62 16 25 O -0.48 -6.42 12.75 -18.23 -0.23 -6.65 16 26 H 0.03 0.55 6.06 -51.93 -0.31 0.24 16 27 H 0.05 1.16 7.80 -51.93 -0.40 0.76 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.12 1.34 6.84 -51.93 -0.36 0.98 16 33 H 0.12 1.49 7.63 -51.93 -0.40 1.09 16 34 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.08 1.05 6.54 -51.93 -0.34 0.71 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.41 4.43 9.06 45.56 0.41 4.84 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -31.89 336.78 -6.81 -38.71 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.58 Total: 5.42 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.86 Total: 1.34 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.44 Total: -39.89 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.86 Total: -26.13 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.89 -6.81 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.257 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds