Wall clock time and date at job start Tue Mar 31 2020 06:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 H 1.08996 * 109.47294 * 305.00065 * 3 2 1 5 5 C 1.50702 * 109.46991 * 185.00076 * 3 2 1 6 6 H 1.07999 * 120.00290 * 239.99980 * 5 3 2 7 7 C 1.37874 * 120.00310 * 60.00207 * 5 3 2 8 8 N 1.31524 * 119.99669 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00513 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46950 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47185 * 209.99979 * 9 7 5 12 12 H 1.48496 * 109.46964 * 330.00266 * 9 7 5 13 13 O 1.45205 * 109.47245 * 65.00393 * 3 2 1 14 14 C 1.34227 * 116.99633 * 270.00025 * 13 3 2 15 15 O 1.20826 * 120.00236 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99737 * 179.97438 * 14 13 3 17 17 C 1.50706 * 109.47171 * 180.02562 * 16 14 13 18 18 C 1.38234 * 120.82168 * 270.27015 * 17 16 14 19 19 C 1.50704 * 120.41383 * 359.97438 * 18 17 16 20 20 N 1.32488 * 119.17482 * 180.27315 * 18 17 16 21 21 C 1.31785 * 120.96384 * 359.72291 * 20 18 17 22 22 C 1.50701 * 119.09279 * 180.02562 * 21 20 18 23 23 N 1.31770 * 121.81418 * 359.97438 * 21 20 18 24 24 C 1.32816 * 120.71846 * 0.02562 * 23 21 20 25 25 O 1.35512 * 120.51235 * 180.02562 * 24 23 21 26 26 H 1.09004 * 109.46990 * 299.99734 * 1 2 3 27 27 H 1.08997 * 109.47593 * 59.99772 * 1 2 3 28 28 H 1.09007 * 109.47379 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47045 * 239.99727 * 2 1 3 30 30 H 1.09003 * 109.46937 * 120.00390 * 2 1 3 31 31 H 0.97004 * 119.99919 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47782 * 59.99882 * 16 14 13 33 33 H 1.09001 * 109.47168 * 299.99638 * 16 14 13 34 34 H 1.09007 * 109.46905 * 270.30216 * 19 18 17 35 35 H 1.09000 * 109.46701 * 30.30008 * 19 18 17 36 36 H 1.08997 * 109.47174 * 150.29942 * 19 18 17 37 37 H 1.09001 * 109.46851 * 269.97391 * 22 21 20 38 38 H 1.08997 * 109.47784 * 29.97422 * 22 21 20 39 39 H 1.09003 * 109.46957 * 149.97781 * 22 21 20 40 40 H 0.96700 * 114.00230 * 90.00135 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7603 11 1 6.3828 0.9223 -2.8174 12 1 6.5569 2.0737 -0.6902 13 8 1.6559 2.0916 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2193 2.7369 0.2657 16 6 0.0071 3.4215 2.5088 17 6 -1.3411 4.0487 2.2634 18 6 -1.4443 5.3413 1.7844 19 6 -0.2053 6.1501 1.4983 20 7 -2.6461 5.8624 1.5856 21 6 -3.7368 5.1651 1.8325 22 6 -5.0823 5.7993 1.5907 23 7 -3.6832 3.9283 2.2840 24 6 -2.5148 3.3378 2.5079 25 8 -2.4645 2.0656 2.9718 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0612 -2.9499 32 1 0.7240 4.1957 2.7823 33 1 -0.0719 2.6969 3.3192 34 1 0.0864 6.6973 2.3948 35 1 0.6035 5.4828 1.2007 36 1 -0.4097 6.8552 0.6926 37 1 -5.4140 6.3046 2.4977 38 1 -5.0024 6.5233 0.7799 39 1 -5.8038 5.0285 1.3197 40 1 -2.4437 1.3939 2.2764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:49 Heat of formation + Delta-G solvation = -117.424214 kcal Electronic energy + Delta-G solvation = -24212.269688 eV Core-core repulsion = 20605.451347 eV Total energy + Delta-G solvation = -3606.818341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.57210 -41.25525 -38.84015 -37.79235 -36.03209 -35.49791 -33.96980 -33.33959 -31.63725 -30.08198 -29.35970 -27.58660 -25.23163 -24.27217 -23.31610 -22.28959 -21.23551 -19.88774 -19.22180 -18.88585 -18.54030 -17.33784 -17.11313 -16.93403 -16.43207 -15.88568 -15.61443 -15.14931 -14.81769 -14.74483 -14.34484 -14.25027 -14.18065 -13.64535 -13.38594 -13.35802 -13.29062 -13.19530 -13.05334 -13.03069 -12.85339 -12.77893 -12.54238 -12.14600 -11.79811 -11.75712 -11.48211 -11.39808 -11.30245 -10.82574 -10.51990 -10.43193 -10.21490 -8.27009 -6.43492 -0.36743 -0.15211 1.33993 1.43166 1.44172 1.55295 1.98766 2.19583 2.41697 2.62247 2.86629 3.03174 3.20759 3.45271 3.66174 3.91887 4.10005 4.18482 4.37131 4.39632 4.47701 4.48250 4.56599 4.61209 4.62854 4.70725 4.79913 4.83916 4.87839 5.07979 5.09298 5.21046 5.34242 5.39474 5.52495 5.68176 5.81207 5.98959 6.14105 6.28268 6.61736 6.95372 6.99187 7.28424 8.79322 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.003962 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.419834 B = 7065.005953 C = 7533.383464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C 0.227 3.773 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.264 1.264 13 O -0.360 6.360 14 C 0.453 3.547 15 O -0.542 6.542 16 C -0.056 4.056 17 C -0.208 4.208 18 C 0.201 3.799 19 C -0.111 4.111 20 N -0.538 5.538 21 C 0.330 3.670 22 C -0.081 4.081 23 N -0.563 5.563 24 C 0.371 3.629 25 O -0.478 6.478 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.269 0.731 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.331 8.730 9.623 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.170 4.170 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.802 3.198 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.188 1.188 13 O -0.276 6.276 14 C 0.298 3.702 15 O -0.433 6.433 16 C -0.094 4.094 17 C -0.214 4.214 18 C 0.056 3.944 19 C -0.167 4.167 20 N -0.255 5.255 21 C 0.064 3.936 22 C -0.139 4.139 23 N -0.289 5.289 24 C 0.184 3.816 25 O -0.288 6.288 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -11.338 9.200 9.529 17.435 hybrid contribution 1.511 -1.147 -0.869 2.087 sum -9.827 8.053 8.660 15.376 Atomic orbital electron populations 1.21705 0.96204 1.00609 1.00051 1.21873 0.94608 0.98166 1.02327 1.20341 0.94411 0.89227 0.78600 0.97524 1.21354 0.90664 1.39815 1.06803 0.91421 1.25770 1.04019 0.93968 0.94446 1.70017 1.37352 1.38012 1.09889 0.85249 0.78003 0.79136 0.77462 1.19387 1.20572 1.18838 1.86468 1.35779 1.62890 1.42472 1.23946 0.79635 0.76243 0.90370 1.90625 1.55997 1.59285 1.37369 1.20141 0.93249 1.01999 0.93997 1.21041 0.95891 0.97520 1.06912 1.21964 0.94777 0.90661 0.87005 1.20953 0.91005 0.99694 1.05088 1.68222 0.98467 1.38371 1.20461 1.23860 0.96697 0.85172 0.87904 1.20732 0.87171 1.01159 1.04806 1.67872 1.29642 1.13880 1.17525 1.19397 0.87556 0.87101 0.87542 1.84570 1.95265 1.12321 1.36613 0.93903 0.94920 0.92038 0.89829 0.93450 0.92151 0.83776 0.84472 0.86151 0.90748 0.89097 0.87581 0.88314 0.88807 0.71659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.56 71.98 0.62 -4.65 16 2 C -0.13 -6.36 5.49 30.59 0.17 -6.19 16 3 C 0.23 11.82 2.25 29.85 0.07 11.89 16 4 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 5 C -0.55 -30.06 8.90 25.60 0.23 -29.84 16 6 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -51.33 11.29 21.45 0.24 -51.09 16 9 Si 0.98 41.85 29.54 68.60 2.03 43.88 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 13 O -0.36 -15.95 9.81 -51.39 -0.50 -16.45 16 14 C 0.45 17.03 6.07 71.23 0.43 17.46 16 15 O -0.54 -23.48 13.17 21.96 0.29 -23.19 16 16 C -0.06 -1.47 5.10 29.10 0.15 -1.32 16 17 C -0.21 -5.86 4.42 -19.59 -0.09 -5.95 16 18 C 0.20 5.48 6.82 42.46 0.29 5.77 16 19 C -0.11 -2.36 9.44 71.24 0.67 -1.69 16 20 N -0.54 -14.95 10.27 -176.22 -1.81 -16.76 16 21 C 0.33 8.78 7.64 138.76 1.06 9.84 16 22 C -0.08 -1.37 10.32 71.24 0.74 -0.63 16 23 N -0.56 -16.61 10.36 -300.70 -3.12 -19.72 16 24 C 0.37 10.87 7.81 84.82 0.66 11.53 16 25 O -0.48 -12.36 12.75 -88.14 -1.12 -13.48 16 26 H 0.04 1.60 6.06 -2.39 -0.01 1.59 16 27 H 0.03 1.44 7.80 -2.39 -0.02 1.43 16 28 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.08 4.48 5.95 -2.39 -0.01 4.47 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.14 2.98 6.84 -2.39 -0.02 2.96 16 33 H 0.14 3.13 7.63 -2.39 -0.02 3.11 16 34 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 1.75 6.54 -2.39 -0.02 1.74 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.42 8.70 9.06 -74.06 -0.67 8.02 16 Total: -1.00 -69.72 336.78 1.85 -67.87 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.41 Total: 21.34 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 5.44 Total: 7.62 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -4.68 Total: -87.58 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -1.34 Total: -53.13 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -69.72 1.85 -67.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.558 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds