Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46807 * 2 1 4 4 C 1.53000 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46849 * 304.99648 * 4 3 2 6 6 C 1.53002 * 109.47172 * 184.99905 * 4 3 2 7 7 C 1.52995 * 109.47055 * 65.65945 * 6 4 3 8 8 S 1.81394 * 109.47467 * 64.99479 * 4 3 2 9 9 C 1.81394 * 103.00328 * 189.16884 * 8 4 3 10 10 C 1.50700 * 109.47549 * 174.95739 * 9 8 4 11 11 C 1.38309 * 119.92397 * 89.99857 * 10 9 8 12 12 C 1.38105 * 120.06377 * 180.29961 * 11 10 9 13 13 C 1.38874 * 119.92977 * 359.47829 * 12 11 10 14 14 O 1.35757 * 120.06817 * 180.25135 * 13 12 11 15 15 C 1.34831 * 117.00213 * 186.20088 * 14 13 12 16 16 H 1.07995 * 119.99667 * 5.43596 * 15 14 13 17 17 C 1.38655 * 119.99807 * 185.42893 * 15 14 13 18 18 N 1.31552 * 120.00156 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99534 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47090 * 60.00784 * 19 17 15 21 21 H 1.48501 * 109.46912 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47204 * 300.00460 * 19 17 15 23 23 C 1.38880 * 119.86594 * 0.52061 * 13 12 11 24 24 C 1.38101 * 119.92551 * 359.73056 * 23 13 12 25 25 H 1.09002 * 109.47038 * 60.00377 * 1 2 3 26 26 H 1.09002 * 109.46503 * 180.02562 * 1 2 3 27 27 H 1.08989 * 109.47365 * 300.00155 * 1 2 3 28 28 H 1.08999 * 109.46986 * 240.00227 * 2 1 3 29 29 H 1.08995 * 109.46689 * 119.99779 * 2 1 3 30 30 H 1.08994 * 109.47711 * 59.99620 * 3 2 1 31 31 H 1.09002 * 109.47013 * 299.99638 * 3 2 1 32 32 H 1.08997 * 109.46737 * 185.65584 * 6 4 3 33 33 H 1.08992 * 109.47127 * 305.65670 * 6 4 3 34 34 H 1.08998 * 109.46938 * 174.83196 * 7 6 4 35 35 H 1.09008 * 109.47055 * 294.82891 * 7 6 4 36 36 H 1.09000 * 109.47714 * 54.83081 * 7 6 4 37 37 H 1.09005 * 109.46894 * 54.96356 * 9 8 4 38 38 H 1.08994 * 109.47549 * 294.96834 * 9 8 4 39 39 H 1.07994 * 119.96554 * 0.03048 * 11 10 9 40 40 H 1.08004 * 120.03145 * 179.72564 * 12 11 10 41 41 H 0.96996 * 119.99783 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.03711 * 179.70429 * 23 13 12 43 43 H 1.08002 * 119.96034 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8410 6 6 4.0800 2.8796 0.1251 7 6 3.6900 3.4413 1.4937 8 16 4.1741 0.7200 -1.5509 9 6 5.9554 0.5480 -1.2541 10 6 6.5929 -0.1618 -2.4207 11 6 7.0759 0.5677 -3.4919 12 6 7.6551 -0.0803 -4.5652 13 6 7.7619 -1.4649 -4.5633 14 8 8.3353 -2.1043 -5.6146 15 6 8.2921 -3.4519 -5.6090 16 1 7.7410 -3.9713 -4.8390 17 6 8.9551 -4.1709 -6.5919 18 7 9.6266 -3.5382 -7.5297 19 14 8.8945 -6.0379 -6.5845 20 1 7.4841 -6.4879 -6.7007 21 1 9.6782 -6.5631 -7.7314 22 1 9.4736 -6.5469 -5.3154 23 6 7.2759 -2.1945 -3.4862 24 6 6.6931 -1.5411 -2.4182 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.1652 2.8901 0.0238 33 1 3.6360 3.4926 -0.6592 34 1 4.1310 4.4301 1.6197 35 1 2.6045 3.5165 1.5597 36 1 4.0565 2.7775 2.2768 37 1 6.1180 -0.0299 -0.3443 38 1 6.4020 1.5359 -1.1417 39 1 6.9962 1.6447 -3.4909 40 1 8.0282 0.4896 -5.4034 41 1 10.0907 -4.0412 -8.2170 42 1 7.3532 -3.2717 -3.4839 43 1 6.3146 -2.1079 -1.5804 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794484713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -52.963779 kcal Electronic energy + Delta-G solvation = -20409.979595 eV Core-core repulsion = 17352.249683 eV Total energy + Delta-G solvation = -3057.729912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.79856 -38.45390 -37.70691 -34.43721 -34.18399 -32.65790 -31.81733 -29.43979 -28.01113 -26.82840 -25.56465 -23.66062 -22.40408 -22.26862 -21.53964 -19.87713 -18.86879 -17.48803 -16.59972 -16.49518 -16.29082 -16.06493 -15.69706 -15.53546 -15.18294 -15.09094 -14.82580 -14.39197 -14.26937 -14.12534 -13.74785 -13.42820 -13.39721 -13.17591 -12.87208 -12.75040 -12.55424 -12.37994 -12.35298 -12.14528 -12.12460 -11.96124 -11.69607 -11.61557 -11.29103 -11.23858 -10.78453 -10.54198 -9.82130 -8.90276 -8.52982 -8.48682 -6.16621 0.27071 0.57112 1.15512 1.34695 1.46237 1.51019 1.80850 2.17182 2.84027 3.17973 3.47590 3.68985 3.84598 3.90287 3.94495 4.14968 4.16190 4.28809 4.32072 4.35256 4.46546 4.55693 4.59077 4.62699 4.72577 4.75570 4.85904 4.86152 4.95622 5.03406 5.07003 5.11543 5.17518 5.21366 5.25621 5.32601 5.37483 5.45674 5.51030 5.52410 5.68227 5.72303 6.00561 6.15934 6.95760 7.75375 8.74263 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023754 B = 0.002865 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.472971 B = 9771.411148 C =10568.332125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.095 4.095 4 C -0.045 4.045 5 H 0.090 0.910 6 C -0.116 4.116 7 C -0.148 4.148 8 S -0.300 6.300 9 C -0.013 4.013 10 C -0.153 4.153 11 C -0.050 4.050 12 C -0.204 4.204 13 C 0.119 3.881 14 O -0.229 6.229 15 C -0.415 4.415 16 H 0.101 0.899 17 C -0.021 4.021 18 N -0.920 5.920 19 Si 1.018 2.982 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.256 1.256 23 C -0.242 4.242 24 C -0.051 4.051 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.274 0.726 42 H 0.121 0.879 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 10.287 19.808 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.133 4.133 4 C -0.174 4.174 5 H 0.108 0.892 6 C -0.155 4.155 7 C -0.207 4.207 8 S -0.068 6.068 9 C -0.160 4.160 10 C -0.155 4.155 11 C -0.069 4.069 12 C -0.224 4.224 13 C 0.068 3.932 14 O -0.135 6.135 15 C -0.491 4.491 16 H 0.118 0.882 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.180 1.180 23 C -0.262 4.262 24 C -0.070 4.070 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.578 10.059 18.533 25.636 hybrid contribution 1.077 -0.633 0.360 1.300 sum -13.501 9.426 18.893 25.062 Atomic orbital electron populations 1.21749 0.95157 1.01819 1.01967 1.21597 0.96337 0.96586 1.02119 1.21485 0.91031 0.97656 1.03131 1.23350 0.99546 0.98935 0.95547 0.89209 1.21815 1.00874 0.93731 0.99115 1.21831 1.02148 1.01062 0.95619 1.87491 1.08544 1.83544 1.27262 1.22025 0.92361 1.03363 0.98248 1.19069 1.05838 0.93202 0.97425 1.20854 0.94746 1.00082 0.91232 1.20437 1.09003 0.91063 1.01869 1.19960 0.92326 0.93222 0.87709 1.83953 1.68655 1.21878 1.39059 1.21779 1.33958 0.78642 1.14727 0.88166 1.26597 0.94799 1.06219 0.94301 1.70172 1.32257 1.38708 1.14602 0.84659 0.79402 0.73318 0.78919 1.18233 1.19530 1.18028 1.21238 1.08300 1.00514 0.96114 1.20904 0.95348 0.94010 0.96782 0.93139 0.92748 0.91733 0.92752 0.91721 0.88708 0.92082 0.92079 0.91387 0.91963 0.91684 0.92339 0.88682 0.88407 0.83580 0.86624 0.91745 0.86165 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.99 0.71 -1.39 16 2 C -0.13 -2.12 5.76 30.60 0.18 -1.94 16 3 C -0.09 -1.41 4.55 30.59 0.14 -1.27 16 4 C -0.05 -0.75 2.26 30.60 0.07 -0.68 16 5 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 6 C -0.12 -1.65 5.37 30.59 0.16 -1.48 16 7 C -0.15 -1.53 9.56 71.98 0.69 -0.84 16 8 S -0.30 -7.32 19.91 -56.49 -1.12 -8.45 16 9 C -0.01 -0.31 5.78 71.24 0.41 0.10 16 10 C -0.15 -4.91 5.14 -19.83 -0.10 -5.01 16 11 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 12 C -0.20 -8.88 9.99 22.39 0.22 -8.66 16 13 C 0.12 6.04 6.65 22.58 0.15 6.19 16 14 O -0.23 -13.98 9.76 -22.83 -0.22 -14.20 16 15 C -0.42 -24.44 9.44 67.92 0.64 -23.80 16 16 H 0.10 5.42 5.30 -2.91 -0.02 5.41 16 17 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 18 N -0.92 -56.84 13.67 21.61 0.30 -56.54 16 19 Si 1.02 43.09 29.55 68.60 2.03 45.11 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 C -0.24 -10.77 9.13 22.39 0.20 -10.56 16 24 C -0.05 -1.80 9.69 22.25 0.22 -1.59 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 1.16 7.13 -2.39 -0.02 1.14 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.05 6.48 -2.39 -0.02 1.03 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.91 7.11 -2.39 -0.02 0.89 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.58 6.73 -2.38 -0.02 0.57 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 38 H 0.10 1.98 7.32 -2.39 -0.02 1.97 16 39 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.12 5.42 5.72 -2.91 -0.02 5.40 16 43 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -69.19 362.29 6.32 -62.86 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.97 Total: 24.40 kcal Atomic # 6 Polarization: -57.57 SS G_CDS: 4.38 Total: -53.19 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.30 Total: -56.54 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.22 Total: -14.20 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -1.12 Total: -8.45 kcal Total: -69.19 6.32 -62.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794484713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.901 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds