Wall clock time and date at job start Tue Mar 31 2020 06:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52993 * 109.47559 * 2 1 4 4 C 1.50705 * 109.47186 * 240.00066 * 2 1 3 5 5 H 1.08003 * 120.00055 * 240.00178 * 4 2 1 6 6 C 1.37883 * 119.99865 * 59.99986 * 4 2 1 7 7 N 1.31514 * 119.99795 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99864 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47103 * 60.00150 * 8 6 4 10 10 H 1.48500 * 109.47356 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47507 * 300.00143 * 8 6 4 12 12 C 1.53002 * 109.47248 * 120.00538 * 2 1 3 13 13 O 1.45200 * 109.46707 * 299.99488 * 12 2 1 14 14 C 1.34828 * 116.99801 * 179.97438 * 13 12 2 15 15 O 1.21584 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.46759 * 119.99571 * 180.02562 * 14 13 12 17 17 C 1.41762 * 126.57879 * 359.96180 * 16 14 13 18 18 N 1.30533 * 108.18414 * 180.02562 * 17 16 14 19 19 N 1.39353 * 109.09326 * 359.95063 * 18 17 16 20 20 C 1.35133 * 108.47734 * 0.10909 * 19 18 17 21 21 O 1.35440 * 123.88002 * 179.85389 * 20 19 18 22 22 C 1.43537 * 115.05814 * 344.47792 * 21 20 19 23 23 C 1.53255 * 109.23314 * 46.87551 * 22 21 20 24 24 C 1.46797 * 127.96377 * 180.16371 * 19 18 17 25 25 H 1.08997 * 109.47257 * 300.00357 * 1 2 3 26 26 H 1.09005 * 109.47418 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47888 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47331 * 300.00223 * 3 2 1 30 30 H 1.09007 * 109.47335 * 60.00053 * 3 2 1 31 31 H 0.96998 * 119.99707 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47145 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47426 * 59.99548 * 12 2 1 34 34 H 1.08003 * 125.90263 * 0.02562 * 17 16 14 35 35 H 1.09002 * 109.52026 * 166.81802 * 22 21 20 36 36 H 1.09004 * 109.51795 * 286.93757 * 22 21 20 37 37 H 1.08999 * 109.50818 * 55.85612 * 23 22 21 38 38 H 1.08991 * 109.51165 * 175.99906 * 23 22 21 39 39 H 1.08995 * 109.76051 * 282.51368 * 24 19 18 40 40 H 1.08995 * 109.75796 * 43.22425 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8279 -0.4191 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0399 -0.7214 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9179 -0.5496 3.6281 15 8 2.6185 -1.5421 3.6761 16 6 1.4651 0.0898 4.8690 17 6 0.6495 1.2445 4.9757 18 7 0.4686 1.4998 6.2429 19 7 1.1420 0.5440 7.0012 20 6 1.7533 -0.3180 6.1589 21 8 2.5000 -1.3714 6.5675 22 6 2.9003 -1.3348 7.9455 23 6 1.6884 -0.9797 8.8139 24 6 1.2123 0.4370 8.4635 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7088 1.1615 -3.4844 32 1 3.1299 -0.7210 1.2494 33 1 1.6766 -1.7490 1.2492 34 1 0.2475 1.8142 4.1509 35 1 3.2851 -2.3114 8.2391 36 1 3.6771 -0.5819 8.0792 37 1 0.8840 -1.6904 8.6242 38 1 1.9702 -1.0201 9.8660 39 1 1.9196 1.1692 8.8530 40 1 0.2263 0.6123 8.8936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797084596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:25 Heat of formation + Delta-G solvation = -46.426623 kcal Electronic energy + Delta-G solvation = -23830.808594 eV Core-core repulsion = 20227.068940 eV Total energy + Delta-G solvation = -3603.739654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.06368 -39.40275 -38.76090 -36.32284 -34.99724 -34.59853 -31.33300 -31.10354 -29.93997 -26.77601 -25.78665 -25.50877 -25.09562 -23.86969 -22.48008 -20.68952 -19.97986 -18.69427 -18.28520 -17.19127 -16.70868 -16.01832 -15.72837 -15.46965 -15.25892 -15.23445 -15.04121 -14.57056 -14.52248 -13.47800 -13.06174 -12.94827 -12.73489 -12.69015 -12.14526 -11.96810 -11.64342 -11.62162 -11.33637 -11.14133 -10.88454 -10.86012 -10.66740 -10.30108 -10.12010 -9.84657 -9.73350 -9.43242 -9.27428 -9.19476 -8.66374 -8.57118 -8.29370 -5.94163 -4.05259 1.39102 1.84472 2.12538 2.68603 3.34991 3.38781 3.39263 3.47714 3.57936 3.77951 3.91987 4.29943 4.37070 4.46436 4.69087 4.72765 4.89124 4.99436 5.08888 5.20837 5.32029 5.35561 5.63532 5.91279 6.25870 6.26376 6.37608 6.61380 6.87198 6.96260 7.09798 7.22843 7.25686 7.30658 7.40216 7.52925 7.72973 7.78186 8.15423 8.26520 8.46453 8.57220 8.94725 9.59676 11.06994 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.003279 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.005214 B = 8537.472666 C = 9061.835963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.087 3.913 13 O -0.345 6.345 14 C 0.536 3.464 15 O -0.524 6.524 16 C -0.284 4.284 17 C 0.129 3.871 18 N -0.291 5.291 19 N -0.400 5.400 20 C 0.338 3.662 21 O -0.263 6.263 22 C 0.042 3.958 23 C -0.178 4.178 24 C 0.129 3.871 25 H 0.018 0.982 26 H 0.083 0.917 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.083 0.917 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.208 0.792 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 0.005 23.744 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.015 3.985 13 O -0.261 6.261 14 C 0.381 3.619 15 O -0.414 6.414 16 C -0.296 4.296 17 C -0.060 4.060 18 N -0.112 5.112 19 N -0.194 5.194 20 C 0.165 3.835 21 O -0.167 6.167 22 C -0.033 4.033 23 C -0.216 4.216 24 C 0.009 3.991 25 H 0.037 0.963 26 H 0.102 0.898 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.224 0.776 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.075 0.341 24.440 24.442 hybrid contribution 0.831 -1.138 -1.134 1.809 sum 0.906 -0.797 23.306 23.337 Atomic orbital electron populations 1.21761 0.97328 0.98936 1.00642 1.18229 0.93416 0.93063 0.88286 1.21763 0.98052 0.98203 1.00643 1.20935 1.31860 1.12249 0.89900 0.92574 1.24847 0.94858 0.94924 0.98704 1.69825 1.36414 1.22586 1.23290 0.86618 0.79208 0.79764 0.82161 1.20277 1.21275 1.20285 1.23616 0.98111 0.95748 0.81065 1.86556 1.69460 1.55717 1.14352 1.19612 0.77193 0.81374 0.83710 1.90823 1.36681 1.25652 1.88293 1.18300 1.17959 1.04843 0.88539 1.24275 0.93725 0.93554 0.94432 1.77118 1.19237 1.11259 1.03574 1.48979 1.40949 1.22858 1.06602 1.19637 0.89353 0.84595 0.89875 1.86762 1.64590 1.37057 1.28274 1.23267 0.96095 1.05372 0.78550 1.22689 0.99806 0.96398 1.02755 1.21981 1.04631 0.97820 0.74706 0.96309 0.89849 0.95894 0.95903 0.89838 0.96320 0.92928 0.92687 0.92673 0.77556 0.85802 0.90534 0.89030 0.86861 0.88985 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.11 37.15 0.30 -2.87 16 2 C 0.07 1.77 0.58 -155.67 -0.09 1.68 16 3 C -0.13 -3.17 8.11 37.15 0.30 -2.87 16 4 C -0.51 -13.99 8.01 -34.44 -0.28 -14.27 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 7 N -0.88 -24.36 9.35 55.43 0.52 -23.84 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.09 2.04 4.27 37.16 0.16 2.20 16 13 O -0.34 -7.36 8.73 -40.84 -0.36 -7.72 16 14 C 0.54 10.92 7.94 34.17 0.27 11.19 16 15 O -0.52 -11.90 16.32 -21.77 -0.36 -12.26 16 16 C -0.28 -4.79 6.13 -105.08 -0.64 -5.43 16 17 C 0.13 1.86 11.88 -16.76 -0.20 1.66 16 18 N -0.29 -3.98 12.54 30.98 0.39 -3.59 16 19 N -0.40 -4.78 4.04 -60.45 -0.24 -5.03 16 20 C 0.34 4.93 7.50 -16.07 -0.12 4.81 16 21 O -0.26 -3.53 10.18 -20.38 -0.21 -3.74 16 22 C 0.04 0.30 7.01 37.29 0.26 0.56 16 23 C -0.18 -0.81 6.17 -26.33 -0.16 -0.98 16 24 C 0.13 0.83 7.40 -3.61 -0.03 0.81 16 25 H 0.02 0.41 7.68 -51.93 -0.40 0.01 16 26 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 30 H 0.02 0.41 7.68 -51.92 -0.40 0.01 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.21 2.56 8.06 -52.48 -0.42 2.13 16 35 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -33.45 333.30 -6.19 -39.64 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.62 Total: -2.91 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.32 Total: -1.75 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.66 Total: -32.45 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.92 Total: -23.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.45 -6.19 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797084596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.790 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds