Wall clock time and date at job start Tue Mar 31 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52993 * 109.47559 * 2 1 4 4 C 1.50705 * 109.47186 * 240.00066 * 2 1 3 5 5 H 1.08003 * 120.00055 * 240.00178 * 4 2 1 6 6 C 1.37883 * 119.99865 * 59.99986 * 4 2 1 7 7 N 1.31514 * 119.99795 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99864 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47103 * 60.00150 * 8 6 4 10 10 H 1.48500 * 109.47356 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47507 * 300.00143 * 8 6 4 12 12 C 1.53002 * 109.47248 * 120.00538 * 2 1 3 13 13 O 1.45200 * 109.46707 * 299.99488 * 12 2 1 14 14 C 1.34828 * 116.99801 * 179.97438 * 13 12 2 15 15 O 1.21584 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.46759 * 119.99571 * 180.02562 * 14 13 12 17 17 C 1.41762 * 126.57879 * 359.96180 * 16 14 13 18 18 N 1.30533 * 108.18414 * 180.02562 * 17 16 14 19 19 N 1.39353 * 109.09326 * 359.95063 * 18 17 16 20 20 C 1.35133 * 108.47734 * 0.10909 * 19 18 17 21 21 O 1.35440 * 123.88002 * 179.85389 * 20 19 18 22 22 C 1.43537 * 115.05814 * 344.47792 * 21 20 19 23 23 C 1.53255 * 109.23314 * 46.87551 * 22 21 20 24 24 C 1.46797 * 127.96377 * 180.16371 * 19 18 17 25 25 H 1.08997 * 109.47257 * 300.00357 * 1 2 3 26 26 H 1.09005 * 109.47418 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47888 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47331 * 300.00223 * 3 2 1 30 30 H 1.09007 * 109.47335 * 60.00053 * 3 2 1 31 31 H 0.96998 * 119.99707 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47145 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47426 * 59.99548 * 12 2 1 34 34 H 1.08003 * 125.90263 * 0.02562 * 17 16 14 35 35 H 1.09002 * 109.52026 * 166.81802 * 22 21 20 36 36 H 1.09004 * 109.51795 * 286.93757 * 22 21 20 37 37 H 1.08999 * 109.50818 * 55.85612 * 23 22 21 38 38 H 1.08991 * 109.51165 * 175.99906 * 23 22 21 39 39 H 1.08995 * 109.76051 * 282.51368 * 24 19 18 40 40 H 1.08995 * 109.75796 * 43.22425 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8279 -0.4191 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 6 2.0399 -0.7214 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9179 -0.5496 3.6281 15 8 2.6185 -1.5421 3.6761 16 6 1.4651 0.0898 4.8690 17 6 0.6495 1.2445 4.9757 18 7 0.4686 1.4998 6.2429 19 7 1.1420 0.5440 7.0012 20 6 1.7533 -0.3180 6.1589 21 8 2.5000 -1.3714 6.5675 22 6 2.9003 -1.3348 7.9455 23 6 1.6884 -0.9797 8.8139 24 6 1.2123 0.4370 8.4635 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7088 1.1615 -3.4844 32 1 3.1299 -0.7210 1.2494 33 1 1.6766 -1.7490 1.2492 34 1 0.2475 1.8142 4.1509 35 1 3.2851 -2.3114 8.2391 36 1 3.6771 -0.5819 8.0792 37 1 0.8840 -1.6904 8.6242 38 1 1.9702 -1.0201 9.8660 39 1 1.9196 1.1692 8.8530 40 1 0.2263 0.6123 8.8936 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797084596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:24 Heat of formation + Delta-G solvation = -67.794211 kcal Electronic energy + Delta-G solvation = -23831.735162 eV Core-core repulsion = 20227.068940 eV Total energy + Delta-G solvation = -3604.666222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.04732 -40.99544 -39.72276 -38.13941 -36.46112 -35.71233 -33.23879 -32.03489 -31.10259 -27.71637 -27.51257 -27.34501 -27.04652 -25.00226 -23.57262 -21.92601 -20.80281 -20.62705 -19.41369 -18.45448 -17.78621 -17.58703 -17.37876 -17.01178 -16.66368 -16.28638 -15.94929 -15.86267 -15.28368 -14.93899 -14.61713 -14.57528 -14.38548 -13.60929 -13.47040 -13.24944 -13.11772 -12.78110 -12.72291 -12.61915 -12.60444 -12.27370 -12.18236 -12.10457 -11.93371 -11.65358 -11.45238 -11.20987 -11.13002 -10.69510 -10.36662 -10.35213 -9.71671 -8.01091 -6.19101 0.25080 0.93671 0.96033 1.46524 1.46969 1.54335 1.88951 1.97042 2.15295 2.48859 3.13291 3.21936 3.47991 3.67400 3.80379 3.94485 4.03067 4.23068 4.27417 4.33062 4.35562 4.49899 4.51991 4.56457 4.68536 4.88394 4.91820 5.03971 5.10511 5.26397 5.30017 5.32460 5.43003 5.63917 5.69410 5.71513 6.06294 6.13093 6.22676 6.34930 6.41676 6.83487 6.95374 7.48384 8.98471 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.003279 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.005214 B = 8537.472666 C = 9061.835963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.063 3.937 3 C -0.118 4.118 4 C -0.537 4.537 5 H 0.048 0.952 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.100 3.900 13 O -0.345 6.345 14 C 0.535 3.465 15 O -0.557 6.557 16 C -0.326 4.326 17 C 0.130 3.870 18 N -0.294 5.294 19 N -0.387 5.387 20 C 0.346 3.654 21 O -0.292 6.292 22 C 0.026 3.974 23 C -0.165 4.165 24 C 0.113 3.887 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.220 0.780 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.116 0.884 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 0.176 26.157 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 C -0.176 4.176 4 C -0.575 4.575 5 H 0.066 0.934 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.026 3.974 13 O -0.260 6.260 14 C 0.383 3.617 15 O -0.450 6.450 16 C -0.338 4.338 17 C -0.059 4.059 18 N -0.115 5.115 19 N -0.182 5.182 20 C 0.171 3.829 21 O -0.196 6.196 22 C -0.048 4.048 23 C -0.203 4.203 24 C -0.005 4.005 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.236 0.764 35 H 0.165 0.835 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.177 0.823 39 H 0.134 0.866 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.072 0.524 26.902 26.907 hybrid contribution 0.857 -1.206 -1.665 2.227 sum 0.929 -0.682 25.237 25.263 Atomic orbital electron populations 1.21617 0.96971 0.98541 1.00469 1.18253 0.93717 0.93312 0.88475 1.21618 0.97649 0.97847 1.00472 1.21203 1.32429 1.12535 0.91302 0.93373 1.25500 0.94966 0.95571 1.01082 1.69933 1.36673 1.23222 1.23889 0.85709 0.78664 0.78747 0.79060 1.20044 1.20562 1.20040 1.23235 0.97387 0.95146 0.81618 1.86540 1.69564 1.55531 1.14408 1.20171 0.76471 0.81020 0.84060 1.90788 1.38469 1.27243 1.88543 1.18249 1.20770 1.06815 0.87999 1.24426 0.93318 0.92906 0.95215 1.77063 1.19386 1.11806 1.03294 1.49426 1.39172 1.21302 1.08268 1.19597 0.88844 0.84741 0.89738 1.86742 1.64157 1.36614 1.32116 1.23800 0.97615 1.07391 0.75949 1.22715 0.98260 0.94724 1.04623 1.22619 1.06628 0.99838 0.71440 0.94586 0.91715 0.96353 0.96329 0.91709 0.94586 0.92809 0.93563 0.93601 0.76368 0.83516 0.89294 0.89742 0.82316 0.86578 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.11 71.98 0.58 -5.28 16 2 C 0.06 3.21 0.58 -52.93 -0.03 3.18 16 3 C -0.12 -5.85 8.11 71.98 0.58 -5.27 16 4 C -0.54 -29.83 8.01 25.60 0.21 -29.62 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 6 C 0.03 1.57 5.15 84.66 0.44 2.01 16 7 N -0.90 -49.87 9.35 21.45 0.20 -49.67 16 8 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.10 4.77 4.27 71.98 0.31 5.08 16 13 O -0.34 -14.96 8.73 -57.40 -0.50 -15.46 16 14 C 0.54 22.33 7.94 70.05 0.56 22.89 16 15 O -0.56 -26.16 16.32 21.90 0.36 -25.81 16 16 C -0.33 -11.04 6.13 -20.16 -0.12 -11.16 16 17 C 0.13 3.69 11.88 85.76 1.02 4.70 16 18 N -0.29 -7.60 12.54 -55.91 -0.70 -8.30 16 19 N -0.39 -8.47 4.04 -456.67 -1.84 -10.31 16 20 C 0.35 9.83 7.50 84.20 0.63 10.46 16 21 O -0.29 -7.61 10.18 -85.09 -0.87 -8.47 16 22 C 0.03 0.29 7.01 72.07 0.51 0.80 16 23 C -0.17 -0.87 6.17 30.85 0.19 -0.68 16 24 C 0.11 1.05 7.40 86.50 0.64 1.69 16 25 H 0.04 1.60 7.68 -2.39 -0.02 1.59 16 26 H 0.06 3.45 6.07 -2.38 -0.01 3.44 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 30 H 0.04 1.60 7.68 -2.38 -0.02 1.58 16 31 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.22 5.30 8.06 -2.91 -0.02 5.28 16 35 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.67 333.30 5.22 -68.45 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.04 Total: 5.21 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.50 Total: -1.22 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -2.34 Total: -68.28 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -1.01 Total: -49.74 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.67 5.22 -68.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797084596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.657 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds