Wall clock time and date at job start Tue Mar 31 2020 08:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46818 * 2 1 4 4 C 1.46506 * 120.00223 * 269.99700 * 3 2 1 5 5 C 1.50699 * 109.47158 * 270.00574 * 4 3 2 6 6 H 1.07996 * 120.00182 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99556 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99588 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47567 * 59.99867 * 9 7 5 11 11 H 1.48501 * 109.47248 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47458 * 299.99408 * 9 7 5 13 13 C 1.34774 * 120.00305 * 90.00199 * 3 2 1 14 14 O 1.21276 * 120.00550 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99847 * 359.97438 * 13 3 2 16 16 O 1.45197 * 109.47411 * 179.97438 * 15 13 3 17 17 C 1.34891 * 117.00239 * 179.97438 * 16 15 13 18 18 O 1.21629 * 119.99603 * 0.02562 * 17 16 15 19 19 C 1.46490 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.37705 * 126.25906 * 359.97438 * 19 17 16 21 21 H 0.96992 * 125.63426 * 359.76640 * 20 19 17 22 22 C 1.34962 * 108.72774 * 180.02562 * 20 19 17 23 23 C 1.35485 * 108.98459 * 0.02562 * 22 20 19 24 24 C 1.37994 * 126.26573 * 180.02562 * 19 17 16 25 25 C 1.50700 * 126.51520 * 359.97438 * 24 19 17 26 26 H 1.09006 * 109.46691 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47181 * 299.99852 * 1 2 3 28 28 H 1.08997 * 109.46948 * 60.00288 * 1 2 3 29 29 H 1.09003 * 109.47031 * 240.00421 * 2 1 3 30 30 H 1.09001 * 109.47383 * 119.99873 * 2 1 3 31 31 H 1.09004 * 109.46645 * 30.00188 * 4 3 2 32 32 H 1.09000 * 109.47025 * 150.00023 * 4 3 2 33 33 H 0.97004 * 119.99981 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47104 * 59.99735 * 15 13 3 35 35 H 1.09009 * 109.47327 * 300.00370 * 15 13 3 36 36 H 1.07995 * 125.50826 * 179.97438 * 22 20 19 37 37 H 1.08000 * 126.07870 * 180.02562 * 23 22 20 38 38 H 1.08998 * 109.47335 * 89.99753 * 25 24 19 39 39 H 1.09003 * 109.46652 * 209.99471 * 25 24 19 40 40 H 1.09001 * 109.46920 * 329.99270 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6175 9 14 5.9137 2.0977 -3.4163 10 1 6.1417 0.6411 -3.5943 11 1 6.1613 2.7976 -4.7024 12 1 6.8409 2.6210 -2.3811 13 6 2.2430 2.0166 1.1671 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 8 2.3065 2.1957 3.5759 17 6 2.1338 1.7099 4.8224 18 8 1.7311 0.5734 4.9817 19 6 2.4313 2.5512 5.9842 20 7 2.8916 3.8487 5.9537 21 1 3.0782 4.3634 5.1531 22 6 3.0455 4.2837 7.2220 23 6 2.6938 3.2909 8.0743 24 6 2.3027 2.1881 7.3093 25 6 1.8306 0.8559 7.8323 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6756 3.5179 -4.4431 34 1 2.6212 0.4186 2.5302 35 1 0.9432 1.0125 2.5299 36 1 3.3937 5.2643 7.5109 37 1 2.7116 3.3426 9.1529 38 1 2.6853 0.1915 7.9584 39 1 1.3357 0.9976 8.7931 40 1 1.1292 0.4153 7.1237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797907477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:47 Heat of formation + Delta-G solvation = -78.836320 kcal Electronic energy + Delta-G solvation = -23301.296739 eV Core-core repulsion = 19696.151695 eV Total energy + Delta-G solvation = -3605.145044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58559 -40.07070 -38.86343 -36.37193 -35.34508 -32.88346 -32.75470 -30.42792 -30.17071 -29.01098 -27.25150 -26.41595 -23.37395 -23.07602 -22.32758 -21.04931 -19.44909 -18.84103 -18.55254 -17.00680 -16.74570 -16.42210 -16.31541 -15.59653 -15.12292 -14.86294 -14.30170 -14.15680 -13.88695 -13.53461 -13.37788 -13.19057 -12.91017 -12.83807 -12.59288 -12.49399 -12.15589 -12.08358 -11.84906 -11.66363 -11.26568 -10.98610 -10.90272 -10.64536 -10.56999 -10.54060 -10.18219 -9.71613 -9.05258 -9.00238 -8.47850 -8.47275 -7.79927 -6.09158 -4.14321 1.10519 2.39954 2.47448 2.99266 3.00761 3.20454 3.29437 3.33759 3.37542 3.86675 4.40602 4.75547 4.79769 4.83784 4.93649 5.06387 5.16195 5.18729 5.25485 5.34529 5.53293 5.56118 5.67055 5.70284 5.70999 5.92271 5.97166 6.07896 6.16715 6.32703 6.42544 6.48484 6.73678 6.95913 7.20903 7.35184 7.42990 7.70153 7.86700 8.16636 8.25191 8.79704 8.94686 9.50806 10.98966 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.003421 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.766808 B = 8183.544741 C = 8984.963586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.522 6.522 15 C 0.053 3.947 16 O -0.336 6.336 17 C 0.534 3.466 18 O -0.502 6.502 19 C -0.047 4.047 20 N -0.523 5.523 21 H 0.429 0.571 22 C 0.039 3.961 23 C -0.219 4.219 24 C -0.065 4.065 25 C -0.093 4.093 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.175 0.825 37 H 0.146 0.854 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -3.098 19.804 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.024 4.024 16 O -0.251 6.251 17 C 0.380 3.620 18 O -0.390 6.390 19 C -0.157 4.157 20 N -0.117 5.117 21 H 0.268 0.732 22 C -0.100 4.100 23 C -0.243 4.243 24 C -0.073 4.073 25 C -0.150 4.150 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.192 0.808 37 H 0.164 0.836 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.282 -2.663 19.410 20.054 hybrid contribution 1.060 0.006 -0.840 1.352 sum -3.222 -2.657 18.570 19.034 Atomic orbital electron populations 1.22233 0.96474 1.01755 1.02413 1.21525 0.93802 0.83880 1.03097 1.48212 1.63682 1.13441 1.07111 1.19328 0.96473 0.93665 0.77543 1.21393 0.96855 1.32231 1.06436 0.92431 1.24929 0.97939 0.94823 0.96315 1.69918 1.35772 1.33221 1.14382 0.86541 0.84645 0.78310 0.77834 1.20190 1.21130 1.20168 1.19708 0.79661 0.87124 0.84315 1.90698 1.44761 1.17575 1.86800 1.22967 1.02837 0.92571 0.84039 1.86607 1.79124 1.45135 1.14260 1.19855 0.74809 0.85231 0.82122 1.90857 1.43524 1.18387 1.86278 1.19124 1.17610 0.86749 0.92261 1.41945 1.49238 1.11564 1.09001 0.73184 1.22024 1.04457 1.00577 0.82923 1.20783 1.10617 0.93401 0.99521 1.19985 1.00517 0.97119 0.89702 1.20388 1.01496 0.92125 1.00969 0.91828 0.93126 0.91786 0.89369 0.91682 0.94598 0.93752 0.92583 0.88526 0.88591 0.80823 0.83633 0.91235 0.91657 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -12.31 2.46 -175.05 -0.43 -12.74 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.67 7.75 -10.99 -0.09 10.59 16 14 O -0.52 -13.27 16.08 -14.10 -0.23 -13.49 16 15 C 0.05 0.87 4.51 36.01 0.16 1.03 16 16 O -0.34 -5.68 9.77 -47.70 -0.47 -6.15 16 17 C 0.53 8.23 7.93 34.05 0.27 8.50 16 18 O -0.50 -8.12 14.61 -19.37 -0.28 -8.40 16 19 C -0.05 -0.62 7.10 -81.99 -0.58 -1.20 16 20 N -0.52 -5.67 6.07 -9.53 -0.06 -5.73 16 21 H 0.43 4.27 8.96 -40.82 -0.37 3.90 16 22 C 0.04 0.33 11.87 -17.16 -0.20 0.13 16 23 C -0.22 -2.06 10.76 -39.98 -0.43 -2.49 16 24 C -0.06 -0.76 6.22 -104.13 -0.65 -1.41 16 25 C -0.09 -0.95 9.83 36.01 0.35 -0.60 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.10 1.43 7.40 -51.93 -0.38 1.05 16 35 H 0.10 1.37 7.18 -51.92 -0.37 1.00 16 36 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.94 6.50 -51.93 -0.34 0.60 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -34.55 347.34 -7.24 -41.79 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.47 Total: 1.31 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.25 Total: 7.06 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.25 Total: -44.03 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.98 Total: -28.04 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.55 -7.24 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797907477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.048 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds