Wall clock time and date at job start Tue Mar 31 2020 08:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46818 * 2 1 4 4 C 1.46506 * 120.00223 * 269.99700 * 3 2 1 5 5 C 1.50699 * 109.47158 * 270.00574 * 4 3 2 6 6 H 1.07996 * 120.00182 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99556 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99588 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47567 * 59.99867 * 9 7 5 11 11 H 1.48501 * 109.47248 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47458 * 299.99408 * 9 7 5 13 13 C 1.34774 * 120.00305 * 90.00199 * 3 2 1 14 14 O 1.21276 * 120.00550 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99847 * 359.97438 * 13 3 2 16 16 O 1.45197 * 109.47411 * 179.97438 * 15 13 3 17 17 C 1.34891 * 117.00239 * 179.97438 * 16 15 13 18 18 O 1.21629 * 119.99603 * 0.02562 * 17 16 15 19 19 C 1.46490 * 120.00389 * 180.02562 * 17 16 15 20 20 N 1.37705 * 126.25906 * 359.97438 * 19 17 16 21 21 H 0.96992 * 125.63426 * 359.76640 * 20 19 17 22 22 C 1.34962 * 108.72774 * 180.02562 * 20 19 17 23 23 C 1.35485 * 108.98459 * 0.02562 * 22 20 19 24 24 C 1.37994 * 126.26573 * 180.02562 * 19 17 16 25 25 C 1.50700 * 126.51520 * 359.97438 * 24 19 17 26 26 H 1.09006 * 109.46691 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47181 * 299.99852 * 1 2 3 28 28 H 1.08997 * 109.46948 * 60.00288 * 1 2 3 29 29 H 1.09003 * 109.47031 * 240.00421 * 2 1 3 30 30 H 1.09001 * 109.47383 * 119.99873 * 2 1 3 31 31 H 1.09004 * 109.46645 * 30.00188 * 4 3 2 32 32 H 1.09000 * 109.47025 * 150.00023 * 4 3 2 33 33 H 0.97004 * 119.99981 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47104 * 59.99735 * 15 13 3 35 35 H 1.09009 * 109.47327 * 300.00370 * 15 13 3 36 36 H 1.07995 * 125.50826 * 179.97438 * 22 20 19 37 37 H 1.08000 * 126.07870 * 180.02562 * 23 22 20 38 38 H 1.08998 * 109.47335 * 89.99753 * 25 24 19 39 39 H 1.09003 * 109.46652 * 209.99471 * 25 24 19 40 40 H 1.09001 * 109.46920 * 329.99270 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6175 9 14 5.9137 2.0977 -3.4163 10 1 6.1417 0.6411 -3.5943 11 1 6.1613 2.7976 -4.7024 12 1 6.8409 2.6210 -2.3811 13 6 2.2430 2.0166 1.1671 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 8 2.3065 2.1957 3.5759 17 6 2.1338 1.7099 4.8224 18 8 1.7311 0.5734 4.9817 19 6 2.4313 2.5512 5.9842 20 7 2.8916 3.8487 5.9537 21 1 3.0782 4.3634 5.1531 22 6 3.0455 4.2837 7.2220 23 6 2.6938 3.2909 8.0743 24 6 2.3027 2.1881 7.3093 25 6 1.8306 0.8559 7.8323 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6756 3.5179 -4.4431 34 1 2.6212 0.4186 2.5302 35 1 0.9432 1.0125 2.5299 36 1 3.3937 5.2643 7.5109 37 1 2.7116 3.3426 9.1529 38 1 2.6853 0.1915 7.9584 39 1 1.3357 0.9976 8.7931 40 1 1.1292 0.4153 7.1237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797907477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:47 Heat of formation + Delta-G solvation = -100.447452 kcal Electronic energy + Delta-G solvation = -23302.233868 eV Core-core repulsion = 19696.151695 eV Total energy + Delta-G solvation = -3606.082173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45946 -41.33698 -40.38249 -37.62919 -37.00596 -34.96335 -33.56970 -31.82801 -31.32830 -30.32547 -28.56578 -27.79128 -25.04728 -24.35744 -23.69693 -21.86625 -20.57358 -20.04414 -19.72470 -18.66895 -18.22784 -17.90580 -17.77520 -17.15732 -16.46208 -16.28944 -15.83316 -15.35426 -14.87471 -14.66949 -14.65100 -14.49502 -14.02317 -13.89264 -13.82820 -13.62317 -13.61770 -13.30740 -13.27200 -13.11180 -12.68738 -12.66451 -12.54262 -12.24579 -12.08670 -11.83602 -11.75907 -11.66508 -10.77924 -10.66492 -9.77035 -9.58214 -9.31056 -8.25423 -6.40233 0.13684 1.17524 1.35961 1.39750 1.47012 1.56735 1.71521 2.02003 2.17143 2.32781 2.45154 3.04657 3.38406 3.67561 3.91748 3.93659 4.12762 4.16559 4.19132 4.31076 4.35666 4.56696 4.83978 4.85525 4.88788 4.92134 4.94505 5.00435 5.06781 5.17101 5.17794 5.33947 5.44045 5.51232 5.69954 5.76788 5.93389 6.01524 6.45665 6.51452 6.62025 6.68613 7.16888 7.33336 8.81891 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.003421 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.766808 B = 8183.544741 C = 8984.963586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.264 3.736 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.500 3.500 14 O -0.578 6.578 15 C 0.065 3.935 16 O -0.354 6.354 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.092 4.092 20 N -0.528 5.528 21 H 0.430 0.570 22 C 0.060 3.940 23 C -0.228 4.228 24 C -0.067 4.067 25 C -0.092 4.092 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.216 0.784 37 H 0.174 0.826 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -4.037 21.892 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.143 3.857 5 C -0.587 4.587 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.287 3.713 14 O -0.458 6.458 15 C -0.011 4.011 16 O -0.270 6.270 17 C 0.380 3.620 18 O -0.408 6.408 19 C -0.202 4.202 20 N -0.123 5.123 21 H 0.269 0.731 22 C -0.078 4.078 23 C -0.251 4.251 24 C -0.076 4.076 25 C -0.149 4.149 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.233 0.767 37 H 0.191 0.809 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.713 -3.660 21.509 22.132 hybrid contribution 0.845 0.350 -1.386 1.660 sum -2.868 -3.310 20.123 20.595 Atomic orbital electron populations 1.22176 0.94279 1.03845 1.01818 1.21881 0.95600 0.80946 1.04444 1.48205 1.63470 1.15268 1.05653 1.18788 0.95587 0.91633 0.79690 1.21684 0.97836 1.32394 1.06749 0.92746 1.25841 1.02413 0.94363 0.96334 1.70037 1.37822 1.33949 1.14819 0.85471 0.78933 0.79071 0.77368 1.18434 1.20261 1.20377 1.20498 0.78341 0.86641 0.85783 1.90659 1.47268 1.20112 1.87769 1.22817 1.04734 0.91960 0.81612 1.86605 1.79663 1.45733 1.14996 1.20208 0.74441 0.85493 0.81839 1.90829 1.44677 1.19004 1.86274 1.19141 1.20979 0.88060 0.91984 1.42067 1.49286 1.10939 1.10034 0.73097 1.22811 1.01544 1.01832 0.81656 1.21182 1.10377 0.92567 1.00945 1.20391 0.99570 0.98206 0.89472 1.20415 1.01362 0.91586 1.01563 0.88317 0.92497 0.93636 0.89908 0.88426 0.95218 0.98231 0.92295 0.86489 0.86028 0.76733 0.80867 0.90858 0.89271 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.30 16 2 C 0.09 2.82 5.93 86.38 0.51 3.33 16 3 N -0.59 -25.23 2.46 -826.13 -2.03 -27.25 16 4 C 0.26 14.17 5.16 85.63 0.44 14.61 16 5 C -0.55 -31.54 9.39 25.60 0.24 -31.29 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.56 5.46 84.66 0.46 1.03 16 8 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 9 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 C 0.50 21.54 7.75 87.66 0.68 22.22 16 14 O -0.58 -30.81 16.08 15.78 0.25 -30.56 16 15 C 0.07 2.11 4.51 71.24 0.32 2.43 16 16 O -0.35 -12.09 9.77 -51.66 -0.50 -12.60 16 17 C 0.53 16.41 7.93 69.97 0.55 16.96 16 18 O -0.52 -16.56 14.61 19.41 0.28 -16.28 16 19 C -0.09 -2.40 7.10 40.31 0.29 -2.12 16 20 N -0.53 -10.89 6.07 -184.05 -1.12 -12.01 16 21 H 0.43 8.45 8.96 -92.71 -0.83 7.62 16 22 C 0.06 0.85 11.87 83.58 0.99 1.84 16 23 C -0.23 -3.60 10.76 22.01 0.24 -3.36 16 24 C -0.07 -1.48 6.22 -19.54 -0.12 -1.60 16 25 C -0.09 -1.76 9.83 71.24 0.70 -1.06 16 26 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 30 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 31 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 32 H 0.00 -0.03 7.42 -2.39 -0.02 -0.04 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.12 3.29 7.40 -2.38 -0.02 3.27 16 35 H 0.12 3.28 7.18 -2.38 -0.02 3.26 16 36 H 0.22 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.41 6.50 -2.39 -0.02 1.40 16 Total: -1.00 -78.61 347.34 5.47 -73.14 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.23 Total: 14.64 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.04 Total: 19.69 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -2.86 Total: -94.79 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: 0.03 Total: -59.43 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -78.61 5.47 -73.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797907477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.311 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds