Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46797 * 2 1 4 4 C 1.52997 * 109.47397 * 240.00526 * 2 1 3 5 5 C 1.50701 * 109.47525 * 59.99488 * 4 2 1 6 6 H 1.08002 * 119.99342 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00074 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00295 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99767 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47293 * 59.99448 * 9 7 5 11 11 H 1.48499 * 109.47322 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46984 * 299.99780 * 9 7 5 13 13 C 1.52993 * 109.47506 * 119.99821 * 2 1 3 14 14 O 1.45204 * 109.47483 * 300.00513 * 13 2 1 15 15 C 1.34755 * 117.00321 * 179.97438 * 14 13 2 16 16 O 1.21535 * 120.00305 * 0.02562 * 15 14 13 17 17 C 1.47242 * 120.00245 * 179.97438 * 15 14 13 18 18 C 1.38293 * 126.47351 * 0.03004 * 17 15 14 19 19 N 1.34223 * 108.39144 * 179.97438 * 18 17 15 20 20 H 0.96998 * 125.38224 * 180.02562 * 19 18 17 21 21 C 1.37795 * 109.23299 * 359.97438 * 19 18 17 22 22 C 1.46816 * 125.83943 * 179.97438 * 21 19 18 23 23 N 1.34777 * 120.00175 * 0.03080 * 22 21 19 24 24 O 1.21681 * 120.00279 * 180.02562 * 22 21 19 25 25 C 1.36327 * 108.32314 * 0.24848 * 21 19 18 26 26 H 1.08997 * 109.47362 * 299.99476 * 1 2 3 27 27 H 1.09004 * 109.47514 * 60.00206 * 1 2 3 28 28 H 1.08998 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46753 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47057 * 300.00415 * 3 2 1 31 31 H 1.08997 * 109.46737 * 60.00141 * 3 2 1 32 32 H 1.08998 * 109.47395 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46856 * 299.99670 * 4 2 1 34 34 H 0.97000 * 120.00396 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47755 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.46757 * 60.00324 * 13 2 1 37 37 H 1.08002 * 125.80155 * 0.02562 * 18 17 15 38 38 H 0.97001 * 120.00485 * 180.02562 * 23 22 21 39 39 H 0.97005 * 119.99790 * 359.72021 * 23 22 21 40 40 H 1.07995 * 126.49953 * 179.74234 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6265 -1.5512 -3.8527 9 14 1.2482 0.3990 -5.2572 10 1 1.7440 1.7987 -5.2572 11 1 1.7432 -0.3010 -6.4697 12 1 -0.2368 0.3999 -5.2571 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0368 2.4348 15 6 1.9177 -0.5491 3.6275 16 8 2.6190 -1.5406 3.6756 17 6 1.4643 0.0929 4.8726 18 6 0.6683 1.2192 4.9742 19 7 0.4783 1.4875 6.2756 20 1 -0.0439 2.2258 6.6264 21 6 1.1416 0.5478 7.0343 22 6 1.1775 0.4970 8.5012 23 7 0.5211 1.4261 9.2239 24 8 1.7998 -0.3839 9.0645 25 6 1.7638 -0.3232 6.1901 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9563 0.8900 32 1 3.1300 -0.7207 -1.2495 33 1 1.6767 -1.7488 -1.2493 34 1 2.8609 -1.8826 -4.7337 35 1 3.1301 -0.7208 1.2494 36 1 1.6767 -1.7488 1.2491 37 1 0.2670 1.7859 4.1470 38 1 0.5451 1.3929 10.1931 39 1 0.0283 2.1308 8.7749 40 1 2.3691 -1.1713 6.4739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798879154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -100.167279 kcal Electronic energy + Delta-G solvation = -22886.046569 eV Core-core repulsion = 19279.976545 eV Total energy + Delta-G solvation = -3606.070024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92758 -39.83483 -39.15062 -37.03427 -35.24226 -34.29704 -32.33426 -31.73810 -30.01725 -27.29174 -26.43640 -26.39865 -24.07031 -23.44474 -22.59102 -20.67494 -19.95199 -19.30017 -18.16657 -17.35641 -17.02089 -16.26683 -16.11038 -16.06357 -15.48107 -15.47694 -14.55204 -14.27164 -14.18047 -13.84362 -13.50729 -13.37995 -13.11000 -12.70640 -12.28719 -12.21180 -12.04013 -11.24354 -10.95017 -10.85070 -10.74463 -10.58301 -10.46521 -10.28995 -10.26959 -10.21135 -10.17911 -9.70602 -9.51826 -9.20075 -8.93708 -8.78384 -8.35310 -5.99398 -4.00689 1.00726 1.48248 2.46411 2.83099 2.86003 3.19274 3.32906 3.33293 3.38217 3.39737 4.40405 4.45829 4.57109 4.74443 5.01481 5.36096 5.49102 5.56469 5.56935 5.59810 5.85916 6.01059 6.12463 6.20968 6.22896 6.29460 6.39485 6.51180 6.67121 6.68188 6.71587 6.84382 6.89708 7.12520 7.12560 7.15612 7.63019 7.70512 7.75311 7.98777 8.12819 8.41104 9.03474 9.62148 11.12194 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.045154 B = 0.002595 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.951107 B =10788.546047 C =11212.134248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C 0.034 3.966 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.081 3.919 14 O -0.350 6.350 15 C 0.530 3.470 16 O -0.514 6.514 17 C -0.217 4.217 18 C 0.108 3.892 19 N -0.528 5.528 20 H 0.421 0.579 21 C -0.076 4.076 22 C 0.597 3.403 23 N -0.856 5.856 24 O -0.526 6.526 25 C -0.034 4.034 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.194 0.806 38 H 0.409 0.591 39 H 0.395 0.605 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 10.641 22.764 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.003 4.003 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.008 3.992 14 O -0.267 6.267 15 C 0.375 3.625 16 O -0.404 6.404 17 C -0.224 4.224 18 C -0.034 4.034 19 N -0.124 5.124 20 H 0.259 0.741 21 C -0.186 4.186 22 C 0.383 3.617 23 N -0.420 5.420 24 O -0.402 6.402 25 C -0.060 4.060 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.211 0.789 38 H 0.240 0.760 39 H 0.223 0.777 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.813 9.657 22.935 25.801 hybrid contribution -0.698 0.995 -0.729 1.417 sum -7.511 10.652 22.206 25.748 Atomic orbital electron populations 1.21707 0.94902 1.00960 1.00656 1.20801 0.96067 0.96163 0.92779 1.21710 1.00090 0.95768 1.00656 1.19128 0.96432 0.95333 0.89419 1.21108 1.31278 1.12090 0.90317 0.92169 1.25015 0.95326 0.95101 0.99099 1.69951 1.36870 1.23023 1.23588 0.86682 0.79136 0.79747 0.82559 1.20306 1.21413 1.20300 1.23484 0.98978 0.95944 0.80799 1.86502 1.69743 1.55837 1.14592 1.20081 0.77265 0.81618 0.83573 1.90846 1.35980 1.25434 1.88109 1.18869 1.10479 1.01403 0.91673 1.22759 0.97739 0.97038 0.85853 1.41737 1.40080 1.24223 1.06347 0.74114 1.19908 1.09549 0.98010 0.91153 1.16991 0.78460 0.81407 0.84844 1.43695 1.55530 1.31550 1.11256 1.90924 1.42641 1.35512 1.71087 1.21145 0.97181 0.98159 0.89470 0.94278 0.91669 0.93749 0.93750 0.91665 0.94285 0.96305 0.96304 0.92956 0.91596 0.91593 0.78883 0.75959 0.77713 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.08 37.16 0.30 -1.99 16 2 C -0.06 -1.14 0.61 -154.51 -0.09 -1.24 16 3 C -0.13 -2.29 8.08 37.16 0.30 -1.99 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.08 1.50 4.33 37.15 0.16 1.66 16 14 O -0.35 -5.65 8.71 -40.64 -0.35 -6.00 16 15 C 0.53 8.50 7.95 34.39 0.27 8.77 16 16 O -0.51 -9.94 16.71 -19.29 -0.32 -10.26 16 17 C -0.22 -2.65 6.13 -105.03 -0.64 -3.29 16 18 C 0.11 0.84 11.76 -16.49 -0.19 0.65 16 19 N -0.53 -2.84 5.91 -9.29 -0.05 -2.90 16 20 H 0.42 0.41 8.13 -40.82 -0.33 0.08 16 21 C -0.08 -0.69 6.99 -82.41 -0.58 -1.26 16 22 C 0.60 5.38 8.06 -12.79 -0.10 5.27 16 23 N -0.86 -3.36 8.87 30.29 0.27 -3.09 16 24 O -0.53 -7.11 17.69 5.21 0.09 -7.02 16 25 C -0.03 -0.41 10.37 -39.08 -0.41 -0.81 16 26 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 27 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 31 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.19 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.41 1.19 8.93 -40.82 -0.36 0.82 16 39 H 0.40 0.21 7.91 -40.82 -0.32 -0.12 16 40 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -35.78 344.06 -6.24 -42.03 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.32 Total: -2.47 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.46 Total: -5.89 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.95 Total: -31.71 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.58 Total: -23.28 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.78 -6.24 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798879154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.138 kcal (2) G-P(sol) polarization free energy of solvation -35.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds