Wall clock time and date at job start Tue Mar 31 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46797 * 2 1 4 4 C 1.52997 * 109.47397 * 240.00526 * 2 1 3 5 5 C 1.50701 * 109.47525 * 59.99488 * 4 2 1 6 6 H 1.08002 * 119.99342 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00074 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00295 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99767 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47293 * 59.99448 * 9 7 5 11 11 H 1.48499 * 109.47322 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46984 * 299.99780 * 9 7 5 13 13 C 1.52993 * 109.47506 * 119.99821 * 2 1 3 14 14 O 1.45204 * 109.47483 * 300.00513 * 13 2 1 15 15 C 1.34755 * 117.00321 * 179.97438 * 14 13 2 16 16 O 1.21535 * 120.00305 * 0.02562 * 15 14 13 17 17 C 1.47242 * 120.00245 * 179.97438 * 15 14 13 18 18 C 1.38293 * 126.47351 * 0.03004 * 17 15 14 19 19 N 1.34223 * 108.39144 * 179.97438 * 18 17 15 20 20 H 0.96998 * 125.38224 * 180.02562 * 19 18 17 21 21 C 1.37795 * 109.23299 * 359.97438 * 19 18 17 22 22 C 1.46816 * 125.83943 * 179.97438 * 21 19 18 23 23 N 1.34777 * 120.00175 * 0.03080 * 22 21 19 24 24 O 1.21681 * 120.00279 * 180.02562 * 22 21 19 25 25 C 1.36327 * 108.32314 * 0.24848 * 21 19 18 26 26 H 1.08997 * 109.47362 * 299.99476 * 1 2 3 27 27 H 1.09004 * 109.47514 * 60.00206 * 1 2 3 28 28 H 1.08998 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46753 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47057 * 300.00415 * 3 2 1 31 31 H 1.08997 * 109.46737 * 60.00141 * 3 2 1 32 32 H 1.08998 * 109.47395 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46856 * 299.99670 * 4 2 1 34 34 H 0.97000 * 120.00396 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47755 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.46757 * 60.00324 * 13 2 1 37 37 H 1.08002 * 125.80155 * 0.02562 * 18 17 15 38 38 H 0.97001 * 120.00485 * 180.02562 * 23 22 21 39 39 H 0.97005 * 119.99790 * 359.72021 * 23 22 21 40 40 H 1.07995 * 126.49953 * 179.74234 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6265 -1.5512 -3.8527 9 14 1.2482 0.3990 -5.2572 10 1 1.7440 1.7987 -5.2572 11 1 1.7432 -0.3010 -6.4697 12 1 -0.2368 0.3999 -5.2571 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0368 2.4348 15 6 1.9177 -0.5491 3.6275 16 8 2.6190 -1.5406 3.6756 17 6 1.4643 0.0929 4.8726 18 6 0.6683 1.2192 4.9742 19 7 0.4783 1.4875 6.2756 20 1 -0.0439 2.2258 6.6264 21 6 1.1416 0.5478 7.0343 22 6 1.1775 0.4970 8.5012 23 7 0.5211 1.4261 9.2239 24 8 1.7998 -0.3839 9.0645 25 6 1.7638 -0.3232 6.1901 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9563 0.8900 32 1 3.1300 -0.7207 -1.2495 33 1 1.6767 -1.7488 -1.2493 34 1 2.8609 -1.8826 -4.7337 35 1 3.1301 -0.7208 1.2494 36 1 1.6767 -1.7488 1.2491 37 1 0.2670 1.7859 4.1470 38 1 0.5451 1.3929 10.1931 39 1 0.0283 2.1308 8.7749 40 1 2.3691 -1.1713 6.4739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798879154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:08 Heat of formation + Delta-G solvation = -126.854589 kcal Electronic energy + Delta-G solvation = -22887.203817 eV Core-core repulsion = 19279.976545 eV Total energy + Delta-G solvation = -3607.227272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.68111 -41.10773 -39.93670 -38.58499 -36.74425 -34.91818 -34.37359 -32.54039 -30.81591 -29.23075 -27.90549 -27.88183 -25.48066 -24.34721 -24.05845 -21.41083 -20.96279 -20.07989 -19.72122 -18.39343 -18.12353 -17.93989 -17.37084 -16.81190 -16.68285 -16.47482 -16.27346 -15.27671 -15.19964 -14.88703 -14.72174 -14.68517 -14.52884 -13.97029 -13.89738 -13.76115 -13.42210 -12.90330 -12.73551 -12.59245 -12.25279 -12.21211 -11.95575 -11.77545 -11.69059 -11.53105 -11.30178 -10.98932 -10.86048 -10.85055 -10.49159 -10.32478 -9.53035 -8.12447 -6.20485 0.31685 0.47902 1.44757 1.47459 1.54474 1.66990 1.92642 2.04982 2.32284 2.45817 2.50816 3.22030 3.71199 3.89103 3.99517 4.00166 4.08839 4.17052 4.29020 4.49159 4.65898 4.73723 4.79768 4.83205 5.09889 5.15784 5.20372 5.27118 5.41451 5.47652 5.51810 5.52418 5.58373 5.59406 5.77987 5.80798 5.90900 6.22383 6.31106 6.41362 6.85849 6.93959 7.16682 7.47109 9.00125 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.045154 B = 0.002595 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.951107 B =10788.546047 C =11212.134248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.119 4.119 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.265 1.265 11 H -0.292 1.292 12 H -0.265 1.265 13 C 0.091 3.909 14 O -0.335 6.335 15 C 0.529 3.471 16 O -0.562 6.562 17 C -0.256 4.256 18 C 0.150 3.850 19 N -0.495 5.495 20 H 0.448 0.552 21 C -0.065 4.065 22 C 0.596 3.404 23 N -0.826 5.826 24 O -0.580 6.580 25 C -0.066 4.066 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.074 0.926 32 H -0.013 1.013 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.234 0.766 38 H 0.418 0.582 39 H 0.416 0.584 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 14.569 23.892 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.176 4.176 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.017 3.983 14 O -0.251 6.251 15 C 0.377 3.623 16 O -0.454 6.454 17 C -0.263 4.263 18 C 0.005 3.995 19 N -0.092 5.092 20 H 0.292 0.708 21 C -0.176 4.176 22 C 0.382 3.618 23 N -0.391 5.391 24 O -0.460 6.460 25 C -0.092 4.092 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.005 0.995 33 H 0.005 0.995 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.250 0.750 38 H 0.251 0.749 39 H 0.248 0.752 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.665 13.689 24.118 29.368 hybrid contribution 0.141 -0.191 -0.945 0.975 sum -9.524 13.498 23.173 28.459 Atomic orbital electron populations 1.21650 0.93174 1.00821 1.01964 1.20608 0.97340 0.96619 0.90701 1.21652 0.99539 0.94453 1.01963 1.19013 0.94420 0.94344 0.92234 1.21514 1.30574 1.12155 0.90790 0.90697 1.25978 0.95649 0.95883 1.02815 1.70117 1.38726 1.25011 1.24205 0.85551 0.79004 0.78739 0.78062 1.19020 1.21805 1.19005 1.23098 0.98085 0.95373 0.81765 1.86466 1.69474 1.55122 1.14041 1.20765 0.76265 0.81075 0.84189 1.90824 1.38378 1.27729 1.88494 1.18668 1.13948 1.04122 0.89566 1.23153 0.94514 0.94588 0.87238 1.41630 1.38586 1.23695 1.05265 0.70807 1.19693 1.08878 0.97841 0.91162 1.17027 0.78381 0.81545 0.84865 1.43438 1.53612 1.30371 1.11681 1.90909 1.45225 1.37954 1.71891 1.21058 0.98656 0.98916 0.90537 0.90658 0.92488 0.94706 0.94704 0.92484 0.90666 0.99462 0.99461 0.93153 0.92976 0.92976 0.75012 0.74870 0.75249 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.08 71.98 0.58 -3.55 16 2 C -0.05 -2.06 0.61 -52.18 -0.03 -2.09 16 3 C -0.12 -4.13 8.08 71.99 0.58 -3.55 16 4 C 0.04 1.91 4.04 29.85 0.12 2.03 16 5 C -0.51 -27.48 7.65 25.60 0.20 -27.29 16 6 H 0.08 3.73 5.68 -2.91 -0.02 3.71 16 7 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 8 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 9 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 C 0.09 3.42 4.33 71.98 0.31 3.73 16 14 O -0.34 -10.37 8.71 -56.65 -0.49 -10.86 16 15 C 0.53 17.04 7.95 70.19 0.56 17.60 16 16 O -0.56 -22.97 16.71 19.72 0.33 -22.64 16 17 C -0.26 -5.93 6.13 -20.13 -0.12 -6.05 16 18 C 0.15 1.65 11.76 84.34 0.99 2.65 16 19 N -0.49 -3.03 5.91 -183.31 -1.08 -4.11 16 20 H 0.45 -1.90 8.13 -92.71 -0.75 -2.65 16 21 C -0.06 -1.03 6.99 40.01 0.28 -0.75 16 22 C 0.60 9.74 8.06 86.49 0.70 10.44 16 23 N -0.83 -3.72 8.87 -176.29 -1.56 -5.28 16 24 O -0.58 -15.83 17.69 -4.29 -0.08 -15.90 16 25 C -0.07 -1.60 10.37 22.59 0.23 -1.36 16 26 H 0.07 2.07 7.68 -2.39 -0.02 2.05 16 27 H 0.06 2.07 6.62 -2.38 -0.02 2.05 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 31 H 0.07 2.06 7.68 -2.39 -0.02 2.05 16 32 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.23 0.83 8.06 -2.91 -0.02 0.81 16 38 H 0.42 1.15 8.93 -92.71 -0.83 0.33 16 39 H 0.42 -1.56 7.91 -92.70 -0.73 -2.29 16 40 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -84.16 344.06 3.07 -81.09 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -1.21 Total: -2.54 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.86 Total: -8.11 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -2.36 Total: -66.40 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -0.24 Total: -49.40 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -84.16 3.07 -81.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798879154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.767 kcal (2) G-P(sol) polarization free energy of solvation -84.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds