Wall clock time and date at job start Tue Mar 31 2020 07:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47161 * 2 1 4 4 O 1.45196 * 109.46901 * 239.99824 * 2 1 3 5 5 C 1.34234 * 116.99938 * 90.00275 * 4 2 1 6 6 O 1.20822 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00068 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47257 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46630 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47349 * 300.00249 * 15 13 11 19 19 C 1.50706 * 109.46835 * 120.00097 * 2 1 3 20 20 C 1.38216 * 120.00887 * 94.72341 * 19 2 1 21 21 C 1.38230 * 120.02066 * 179.72175 * 20 19 2 22 22 C 1.38271 * 120.05002 * 0.55053 * 21 20 19 23 23 C 1.38173 * 120.02335 * 359.72533 * 22 21 20 24 24 C 1.38432 * 120.01147 * 274.99438 * 19 2 1 25 25 F 1.35098 * 120.02737 * 0.03051 * 24 19 2 26 26 H 1.09003 * 109.47130 * 300.00303 * 1 2 3 27 27 H 1.09001 * 109.46779 * 59.99791 * 1 2 3 28 28 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46932 * 300.00373 * 7 5 4 30 30 H 1.08997 * 109.47392 * 59.99712 * 7 5 4 31 31 H 1.09004 * 109.47330 * 299.99977 * 8 7 5 32 32 H 1.09005 * 109.47124 * 59.99773 * 8 7 5 33 33 H 1.08999 * 109.46783 * 300.00124 * 9 8 7 34 34 H 1.09000 * 109.46608 * 60.00231 * 9 8 7 35 35 H 1.08988 * 109.47430 * 300.00270 * 10 9 8 36 36 H 1.08997 * 109.46441 * 60.00731 * 10 9 8 37 37 H 0.97000 * 119.99712 * 180.02562 * 14 13 11 38 38 H 1.07999 * 119.99278 * 0.02562 * 20 19 2 39 39 H 1.07998 * 119.97568 * 180.27835 * 21 20 19 40 40 H 1.07995 * 119.98513 * 179.74951 * 22 21 20 41 41 H 1.08003 * 120.01123 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7193 -0.5771 -3.5492 8 6 2.8644 0.4891 -4.6368 9 6 3.3749 -0.1616 -5.9241 10 6 3.5194 0.9045 -7.0119 11 6 4.0227 0.2636 -8.2795 12 1 4.2194 -0.7979 -8.3067 13 6 4.2321 1.0326 -9.4047 14 7 3.9931 2.3254 -9.3715 15 14 4.8554 0.2381 -10.9763 16 1 3.8897 -0.7974 -11.4241 17 1 4.9969 1.2730 -12.0317 18 1 6.1753 -0.3929 -10.7222 19 6 2.0323 -0.7105 1.2305 20 6 2.3556 -2.0529 1.1701 21 6 2.8218 -2.7034 2.2971 22 6 2.9544 -2.0149 3.4889 23 6 2.6264 -0.6742 3.5530 24 6 2.1647 -0.0201 2.4231 25 9 1.8432 1.2906 2.4848 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6884 -1.0401 -3.3631 30 1 2.0105 -1.3373 -3.8774 31 1 1.8955 0.9525 -4.8230 32 1 3.5735 1.2490 -4.3083 33 1 4.3438 -0.6247 -5.7376 34 1 2.6661 -0.9217 -6.2526 35 1 2.5503 1.3672 -7.1982 36 1 4.2280 1.6648 -6.6835 37 1 4.1400 2.8663 -10.1631 38 1 2.2487 -2.5927 0.2408 39 1 3.0785 -3.7513 2.2479 40 1 3.3149 -2.5252 4.3698 41 1 2.7305 -0.1365 4.4838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:55 Heat of formation + Delta-G solvation = -136.330714 kcal Electronic energy + Delta-G solvation = -22372.603905 eV Core-core repulsion = 18745.045756 eV Total energy + Delta-G solvation = -3627.558150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.27712 -40.72935 -39.34264 -36.91116 -34.98327 -33.44838 -32.63722 -31.00009 -30.01941 -29.52546 -26.07065 -24.54111 -23.42586 -22.66636 -21.41357 -20.36021 -20.02916 -18.08529 -17.71416 -16.89817 -16.45550 -16.40960 -16.15288 -15.95627 -15.53419 -14.74757 -14.60564 -14.44441 -14.13567 -13.63661 -13.57409 -13.34113 -12.70839 -12.65748 -12.57457 -12.32171 -12.21377 -11.77513 -11.69867 -11.57060 -11.22431 -10.99787 -10.90340 -10.59291 -10.58346 -10.46522 -10.37622 -9.65196 -9.39842 -9.28731 -9.08398 -9.03051 -8.31391 -5.96249 -3.98956 0.68230 0.79722 2.26669 2.52034 3.16487 3.35088 3.39536 3.41719 3.84992 4.07082 4.36337 4.48254 4.53686 4.66220 4.78671 4.82082 4.86505 5.00239 5.19171 5.26180 5.34185 5.39115 5.43297 5.48700 5.62016 5.68593 5.74722 5.80998 5.92306 5.98205 6.04942 6.19207 6.40595 6.44872 6.47584 6.76160 6.94314 7.15823 7.71864 7.78856 7.86980 8.04424 8.46002 9.08394 9.64742 11.15031 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034365 B = 0.002244 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.595752 B =12472.820530 C =12864.401458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.097 0.903 4 O -0.353 6.353 5 C 0.460 3.540 6 O -0.501 6.501 7 C -0.111 4.111 8 C -0.109 4.109 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.123 4.123 20 C -0.067 4.067 21 C -0.131 4.131 22 C -0.090 4.090 23 C -0.155 4.155 24 C 0.108 3.892 25 F -0.136 7.136 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -10.428 27.819 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.072 3.928 3 H 0.115 0.885 4 O -0.271 6.271 5 C 0.303 3.697 6 O -0.388 6.388 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.017 4.017 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.124 4.124 20 C -0.085 4.085 21 C -0.149 4.149 22 C -0.108 4.108 23 C -0.173 4.173 24 C 0.089 3.911 25 F -0.114 7.114 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.068 -9.833 27.747 29.871 hybrid contribution 0.271 0.044 -0.767 0.815 sum -4.796 -9.789 26.979 29.098 Atomic orbital electron populations 1.22156 0.92815 1.03375 1.03598 1.21207 0.94777 0.96459 0.80331 0.88471 1.86542 1.77438 1.42792 1.20366 1.24262 0.74052 0.86217 0.85139 1.90673 1.47466 1.16758 1.83878 1.21618 1.03307 1.00961 0.88923 1.21586 1.02722 0.96537 0.93807 1.21649 0.99379 0.99793 0.93901 1.19091 0.97186 0.93491 0.91933 1.21234 1.44075 0.94513 0.96159 0.92745 1.25046 0.95728 0.94851 0.98950 1.69963 1.49052 1.05003 1.29442 0.86658 0.79384 0.78938 0.83001 1.20264 1.21327 1.20269 1.19719 1.04066 0.95462 0.93110 1.21004 0.95559 0.92586 0.99309 1.21290 1.00259 1.00717 0.92620 1.21083 0.97965 0.93304 0.98435 1.21121 1.02598 0.95904 0.97715 1.17456 1.00994 0.78309 0.94389 1.91518 1.90302 1.32632 1.96956 0.90662 0.91019 0.91198 0.87847 0.87804 0.91510 0.91531 0.93200 0.93199 0.96548 0.96554 0.92963 0.84010 0.84973 0.84870 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.53 37.16 0.35 -1.26 16 2 C 0.13 1.47 2.55 -27.88 -0.07 1.40 16 3 H 0.10 1.29 6.81 -51.93 -0.35 0.94 16 4 O -0.35 -4.34 8.72 -39.27 -0.34 -4.68 16 5 C 0.46 6.57 7.93 36.01 0.29 6.85 16 6 O -0.50 -8.74 15.20 -18.75 -0.28 -9.03 16 7 C -0.11 -1.45 5.81 -27.89 -0.16 -1.62 16 8 C -0.11 -1.88 4.50 -26.73 -0.12 -2.00 16 9 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.12 -1.24 5.07 -104.56 -0.53 -1.77 16 20 C -0.07 -0.56 9.35 -39.59 -0.37 -0.93 16 21 C -0.13 -0.86 10.05 -39.57 -0.40 -1.26 16 22 C -0.09 -0.56 10.04 -39.59 -0.40 -0.95 16 23 C -0.15 -1.17 10.03 -39.52 -0.40 -1.56 16 24 C 0.11 1.06 7.24 -39.42 -0.29 0.77 16 25 F -0.14 -1.50 16.57 2.25 0.04 -1.46 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.45 8.14 -51.94 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.14 1.10 7.35 -52.49 -0.39 0.72 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -32.73 355.30 -8.49 -41.22 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.20 Total: -3.54 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.78 Total: -17.99 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.74 Total: -26.68 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.63 Total: -13.71 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.73 -8.49 -41.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.109 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds