Wall clock time and date at job start Tue Mar 31 2020 07:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47161 * 2 1 4 4 O 1.45196 * 109.46901 * 239.99824 * 2 1 3 5 5 C 1.34234 * 116.99938 * 90.00275 * 4 2 1 6 6 O 1.20822 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00068 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47257 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46630 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47349 * 300.00249 * 15 13 11 19 19 C 1.50706 * 109.46835 * 120.00097 * 2 1 3 20 20 C 1.38216 * 120.00887 * 94.72341 * 19 2 1 21 21 C 1.38230 * 120.02066 * 179.72175 * 20 19 2 22 22 C 1.38271 * 120.05002 * 0.55053 * 21 20 19 23 23 C 1.38173 * 120.02335 * 359.72533 * 22 21 20 24 24 C 1.38432 * 120.01147 * 274.99438 * 19 2 1 25 25 F 1.35098 * 120.02737 * 0.03051 * 24 19 2 26 26 H 1.09003 * 109.47130 * 300.00303 * 1 2 3 27 27 H 1.09001 * 109.46779 * 59.99791 * 1 2 3 28 28 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46932 * 300.00373 * 7 5 4 30 30 H 1.08997 * 109.47392 * 59.99712 * 7 5 4 31 31 H 1.09004 * 109.47330 * 299.99977 * 8 7 5 32 32 H 1.09005 * 109.47124 * 59.99773 * 8 7 5 33 33 H 1.08999 * 109.46783 * 300.00124 * 9 8 7 34 34 H 1.09000 * 109.46608 * 60.00231 * 9 8 7 35 35 H 1.08988 * 109.47430 * 300.00270 * 10 9 8 36 36 H 1.08997 * 109.46441 * 60.00731 * 10 9 8 37 37 H 0.97000 * 119.99712 * 180.02562 * 14 13 11 38 38 H 1.07999 * 119.99278 * 0.02562 * 20 19 2 39 39 H 1.07998 * 119.97568 * 180.27835 * 21 20 19 40 40 H 1.07995 * 119.98513 * 179.74951 * 22 21 20 41 41 H 1.08003 * 120.01123 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7193 -0.5771 -3.5492 8 6 2.8644 0.4891 -4.6368 9 6 3.3749 -0.1616 -5.9241 10 6 3.5194 0.9045 -7.0119 11 6 4.0227 0.2636 -8.2795 12 1 4.2194 -0.7979 -8.3067 13 6 4.2321 1.0326 -9.4047 14 7 3.9931 2.3254 -9.3715 15 14 4.8554 0.2381 -10.9763 16 1 3.8897 -0.7974 -11.4241 17 1 4.9969 1.2730 -12.0317 18 1 6.1753 -0.3929 -10.7222 19 6 2.0323 -0.7105 1.2305 20 6 2.3556 -2.0529 1.1701 21 6 2.8218 -2.7034 2.2971 22 6 2.9544 -2.0149 3.4889 23 6 2.6264 -0.6742 3.5530 24 6 2.1647 -0.0201 2.4231 25 9 1.8432 1.2906 2.4848 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6884 -1.0401 -3.3631 30 1 2.0105 -1.3373 -3.8774 31 1 1.8955 0.9525 -4.8230 32 1 3.5735 1.2490 -4.3083 33 1 4.3438 -0.6247 -5.7376 34 1 2.6661 -0.9217 -6.2526 35 1 2.5503 1.3672 -7.1982 36 1 4.2280 1.6648 -6.6835 37 1 4.1400 2.8663 -10.1631 38 1 2.2487 -2.5927 0.2408 39 1 3.0785 -3.7513 2.2479 40 1 3.3149 -2.5252 4.3698 41 1 2.7305 -0.1365 4.4838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:55 Heat of formation + Delta-G solvation = -152.630289 kcal Electronic energy + Delta-G solvation = -22373.310708 eV Core-core repulsion = 18745.045756 eV Total energy + Delta-G solvation = -3628.264952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.03154 -41.79369 -40.02883 -37.98039 -36.64070 -34.70507 -34.17814 -31.65122 -31.55959 -30.32732 -27.80029 -25.54862 -24.51226 -23.72275 -22.41981 -21.76351 -21.33541 -18.86490 -18.71447 -18.37956 -17.74766 -17.51471 -17.15997 -16.74504 -16.54184 -16.26187 -16.08679 -15.25375 -14.92634 -14.78848 -14.57216 -14.30619 -14.17382 -13.84217 -13.67166 -13.37924 -13.33257 -13.18891 -12.93913 -12.79879 -12.39484 -12.29537 -12.19514 -12.19278 -12.06743 -11.81041 -11.61650 -11.38582 -11.30046 -11.06038 -10.53683 -9.99196 -9.70697 -8.18173 -6.30105 0.06633 0.21958 1.13630 1.41138 1.45028 1.50807 1.53040 2.42618 2.58797 3.14714 3.21684 3.29925 3.60272 3.78701 3.88367 3.94163 3.97111 4.08720 4.13908 4.34907 4.39330 4.46274 4.59546 4.63849 4.67119 4.77341 4.84912 4.87005 4.98945 5.06226 5.13913 5.14350 5.21812 5.32283 5.34536 5.41589 5.50428 5.56979 5.78000 5.88548 5.89427 6.25676 6.67612 6.88378 7.39462 8.93807 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.034365 B = 0.002244 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.595752 B =12472.820530 C =12864.401458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 H 0.070 0.930 4 O -0.342 6.342 5 C 0.464 3.536 6 O -0.542 6.542 7 C -0.100 4.100 8 C -0.101 4.101 9 C -0.095 4.095 10 C 0.018 3.982 11 C -0.542 4.542 12 H 0.067 0.933 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.969 3.031 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.264 1.264 19 C -0.140 4.140 20 C -0.076 4.076 21 C -0.124 4.124 22 C -0.083 4.083 23 C -0.156 4.156 24 C 0.081 3.919 25 F -0.152 7.152 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.065 0.935 35 H -0.014 1.014 36 H -0.015 1.015 37 H 0.263 0.737 38 H 0.147 0.853 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -13.959 28.856 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.070 3.930 3 H 0.088 0.912 4 O -0.259 6.259 5 C 0.309 3.691 6 O -0.431 6.431 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.133 4.133 10 C -0.019 4.019 11 C -0.580 4.580 12 H 0.085 0.915 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.141 4.141 20 C -0.094 4.094 21 C -0.142 4.142 22 C -0.100 4.100 23 C -0.175 4.175 24 C 0.062 3.938 25 F -0.130 7.130 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.004 0.996 36 H 0.003 0.997 37 H 0.071 0.929 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.375 -13.397 28.808 32.071 hybrid contribution 0.058 1.141 -0.995 1.515 sum -4.317 -12.256 27.813 30.699 Atomic orbital electron populations 1.22124 0.91841 1.04226 1.03230 1.21266 0.95658 0.95410 0.80696 0.91161 1.86517 1.77047 1.42158 1.20155 1.24461 0.73149 0.85672 0.85845 1.90672 1.49360 1.18551 1.84560 1.21513 1.05623 0.99704 0.86853 1.21366 1.01120 0.97278 0.94160 1.21435 1.00769 0.98085 0.92972 1.19055 0.94521 0.94493 0.93837 1.21730 1.43873 0.95268 0.97091 0.91473 1.26094 0.95862 0.95364 1.03133 1.70123 1.50298 1.06797 1.30624 0.85442 0.79299 0.78029 0.77923 1.18880 1.21196 1.18924 1.19679 1.05728 0.96345 0.92354 1.21167 0.95883 0.91867 1.00465 1.21661 0.98638 1.02010 0.91899 1.21515 0.96397 0.92606 0.99516 1.21426 1.01763 0.96741 0.97521 1.17796 1.02671 0.77970 0.95406 1.91472 1.90693 1.33799 1.97074 0.89980 0.92415 0.89636 0.85120 0.84844 0.93147 0.93360 0.91765 0.91655 0.99559 0.99651 0.92882 0.83502 0.82088 0.81545 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.53 71.98 0.69 -2.49 16 2 C 0.12 2.94 2.55 29.85 0.08 3.02 16 3 H 0.07 2.02 6.81 -2.39 -0.02 2.01 16 4 O -0.34 -8.19 8.72 -51.46 -0.45 -8.64 16 5 C 0.46 13.14 7.93 71.24 0.56 13.71 16 6 O -0.54 -19.70 15.20 21.98 0.33 -19.37 16 7 C -0.10 -2.44 5.81 29.85 0.17 -2.27 16 8 C -0.10 -3.51 4.50 30.59 0.14 -3.38 16 9 C -0.10 -3.76 5.15 30.60 0.16 -3.60 16 10 C 0.02 0.98 4.97 29.85 0.15 1.12 16 11 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 12 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 13 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 14 N -0.94 -58.86 13.29 21.45 0.28 -58.58 16 15 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 C -0.14 -2.77 5.07 -19.82 -0.10 -2.87 16 20 C -0.08 -1.14 9.35 22.26 0.21 -0.93 16 21 C -0.12 -1.23 10.05 22.28 0.22 -1.01 16 22 C -0.08 -0.75 10.04 22.26 0.22 -0.52 16 23 C -0.16 -2.08 10.03 22.31 0.22 -1.85 16 24 C 0.08 1.58 7.24 22.37 0.16 1.74 16 25 F -0.15 -3.52 16.57 44.97 0.75 -2.78 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 32 H 0.05 1.82 8.10 -2.38 -0.02 1.81 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 35 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 36 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.15 1.96 7.35 -2.91 -0.02 1.94 16 39 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 40 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -73.89 355.30 7.53 -66.36 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.01 Total: 6.55 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.58 Total: -30.17 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.28 Total: -58.58 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.11 Total: -28.00 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.75 Total: -2.78 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.89 7.53 -66.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.273 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds