Wall clock time and date at job start Tue Mar 31 2020 07:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47427 * 2 1 4 4 O 1.45198 * 109.47350 * 120.00440 * 2 1 3 5 5 C 1.34221 * 116.99903 * 269.99854 * 4 2 1 6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46891 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46994 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99838 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99810 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00437 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99747 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47412 * 59.99692 * 15 13 11 17 17 H 1.48498 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46851 * 299.99415 * 15 13 11 19 19 C 1.50703 * 109.46692 * 240.00363 * 2 1 3 20 20 C 1.38242 * 119.97822 * 279.72427 * 19 2 1 21 21 C 1.38197 * 120.02970 * 179.72614 * 20 19 2 22 22 C 1.38455 * 119.97209 * 0.52925 * 21 20 19 23 23 F 1.35101 * 120.02738 * 179.72684 * 22 21 20 24 24 C 1.38461 * 119.94937 * 359.74490 * 22 21 20 25 25 C 1.38198 * 119.97177 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46762 * 299.99499 * 1 2 3 28 28 H 1.08996 * 109.47318 * 59.99471 * 1 2 3 29 29 H 1.09001 * 109.46953 * 299.99668 * 7 5 4 30 30 H 1.09000 * 109.47318 * 59.99266 * 7 5 4 31 31 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 32 32 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 33 33 H 1.08992 * 109.47554 * 299.99696 * 9 8 7 34 34 H 1.08996 * 109.47261 * 60.00229 * 9 8 7 35 35 H 1.08998 * 109.47844 * 299.99997 * 10 9 8 36 36 H 1.09001 * 109.47248 * 60.00689 * 10 9 8 37 37 H 0.96999 * 120.00397 * 180.02562 * 14 13 11 38 38 H 1.08003 * 119.98627 * 359.97438 * 20 19 2 39 39 H 1.08001 * 120.01281 * 180.24853 * 21 20 19 40 40 H 1.08001 * 120.01225 * 179.97438 * 24 22 21 41 41 H 1.08009 * 119.98272 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2173 0.0638 2.2810 6 8 1.9984 1.2517 2.2503 7 6 2.7196 -0.5773 3.5490 8 6 2.8635 0.4887 4.6371 9 6 3.3728 -0.1623 5.9246 10 6 3.5173 0.9037 7.0125 11 6 4.0184 0.2624 8.2809 12 1 4.2145 -0.7993 8.3081 13 6 4.2263 1.0311 9.4064 14 7 3.9880 2.3240 9.3731 15 14 4.8481 0.2362 10.9784 16 1 6.1685 -0.3944 10.7256 17 1 4.9871 1.2707 12.0347 18 1 3.8822 -0.7997 11.4248 19 6 2.0323 -0.7104 -1.2306 20 6 2.0718 -2.0918 -1.2629 21 6 2.5269 -2.7444 -2.3929 22 6 2.9536 -2.0139 -3.4889 23 9 3.4039 -2.6507 -4.5921 24 6 2.9189 -0.6302 -3.4533 25 6 2.4590 0.0201 -2.3239 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.0107 -1.3375 3.8772 30 1 3.6886 -1.0403 3.3629 31 1 3.5721 1.2492 4.3091 32 1 1.8941 0.9513 4.8231 33 1 2.6639 -0.9226 6.2524 34 1 4.3420 -0.6252 5.7389 35 1 4.2264 1.6638 6.6846 36 1 2.5483 1.3669 7.1983 37 1 4.1346 2.8648 10.1649 38 1 1.7431 -2.6614 -0.4062 39 1 2.5538 -3.8238 -2.4193 40 1 3.2520 -0.0593 -4.3075 41 1 2.4323 1.0995 -2.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:58 Heat of formation + Delta-G solvation = -137.958171 kcal Electronic energy + Delta-G solvation = -22042.342849 eV Core-core repulsion = 18414.714128 eV Total energy + Delta-G solvation = -3627.628721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.27678 -40.78727 -39.42040 -36.84878 -34.99224 -33.25146 -32.62347 -31.58103 -29.94635 -29.29839 -26.06918 -24.37956 -23.61074 -22.77370 -21.38293 -20.37996 -20.03932 -18.12654 -17.72478 -17.01654 -16.46787 -16.39778 -16.16345 -15.96496 -15.31616 -14.77631 -14.57741 -14.40924 -13.99988 -13.84494 -13.69173 -13.36169 -13.00229 -12.67446 -12.58973 -12.32859 -12.12140 -11.78501 -11.67417 -11.54615 -11.25529 -11.00544 -10.87499 -10.60150 -10.58926 -10.47399 -10.38832 -9.66104 -9.54276 -9.30199 -9.06305 -9.01627 -8.32130 -5.97021 -3.99723 0.62780 0.80217 2.25279 2.54423 3.15819 3.34600 3.39044 3.41270 3.83332 4.14470 4.29583 4.45525 4.47672 4.62943 4.74041 4.82100 4.88372 4.99682 5.17961 5.25430 5.35339 5.38356 5.40191 5.47448 5.56261 5.68334 5.70914 5.75876 5.80867 6.03104 6.04058 6.18618 6.38916 6.42943 6.46666 6.75172 6.93237 7.14934 7.70959 7.77949 7.85939 8.03528 8.45201 9.07582 9.64035 11.14214 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033773 B = 0.002092 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.875926 B =13378.519762 C =13766.573708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 H 0.095 0.905 4 O -0.354 6.354 5 C 0.461 3.539 6 O -0.504 6.504 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.099 4.099 20 C -0.062 4.062 21 C -0.155 4.155 22 C 0.100 3.900 23 F -0.140 7.140 24 C -0.154 4.154 25 C -0.077 4.077 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 -8.395 -26.865 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.071 3.929 3 H 0.113 0.887 4 O -0.272 6.272 5 C 0.304 3.696 6 O -0.390 6.390 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.100 4.100 20 C -0.080 4.080 21 C -0.174 4.174 22 C 0.081 3.919 23 F -0.119 7.119 24 C -0.173 4.173 25 C -0.095 4.095 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.821 -7.885 -26.837 28.571 hybrid contribution 0.418 -0.361 0.593 0.811 sum -5.402 -8.246 -26.244 28.034 Atomic orbital electron populations 1.22185 0.93074 1.03393 1.03472 1.21362 0.94654 0.96419 0.80438 0.88663 1.86586 1.77360 1.42860 1.20399 1.24234 0.73966 0.86186 0.85170 1.90664 1.47653 1.16767 1.83943 1.21623 1.03327 1.00963 0.89012 1.21578 1.02689 0.96528 0.93799 1.21648 0.99400 0.99796 0.93922 1.19094 0.97184 0.93486 0.91932 1.21234 1.44131 0.94513 0.96097 0.92745 1.25043 0.95725 0.94858 0.98954 1.69959 1.49070 1.04993 1.29440 0.86658 0.79388 0.78940 0.82996 1.20264 1.21330 1.20270 1.19719 1.01270 0.94197 0.94776 1.20932 0.96196 0.93686 0.97203 1.21204 1.02270 1.01030 0.92888 1.17792 0.99358 0.90787 0.83945 1.91510 1.86741 1.82254 1.51354 1.21104 1.03441 0.92586 1.00162 1.20864 0.96366 1.00413 0.91890 0.91304 0.91189 0.90580 0.87847 0.87863 0.91543 0.91534 0.93196 0.93206 0.96553 0.96552 0.92966 0.84198 0.84426 0.84422 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.53 37.16 0.35 -1.01 16 2 C 0.13 1.23 2.77 -27.88 -0.08 1.15 16 3 H 0.10 1.00 7.02 -51.93 -0.36 0.64 16 4 O -0.35 -4.06 9.20 -39.23 -0.36 -4.43 16 5 C 0.46 6.24 7.93 36.01 0.29 6.53 16 6 O -0.50 -8.26 15.20 -18.75 -0.29 -8.54 16 7 C -0.11 -1.43 5.81 -27.88 -0.16 -1.59 16 8 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 9 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.10 -0.85 4.98 -104.62 -0.52 -1.38 16 20 C -0.06 -0.50 9.35 -39.60 -0.37 -0.87 16 21 C -0.16 -1.21 10.03 -39.52 -0.40 -1.61 16 22 C 0.10 0.85 7.30 -39.42 -0.29 0.57 16 23 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 24 C -0.15 -1.16 10.03 -39.51 -0.40 -1.55 16 25 C -0.08 -0.58 9.67 -39.59 -0.38 -0.96 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.19 8.10 -51.93 -0.42 0.76 16 32 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.14 1.01 7.77 -52.48 -0.41 0.61 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.14 0.77 8.04 -52.48 -0.42 0.35 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -32.27 356.86 -8.50 -40.77 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -6.23 Total: -3.86 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.76 Total: -18.26 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.65 Total: -12.97 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.27 -8.50 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.185 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds