Wall clock time and date at job start Tue Mar 31 2020 07:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47427 * 2 1 4 4 O 1.45198 * 109.47350 * 120.00440 * 2 1 3 5 5 C 1.34221 * 116.99903 * 269.99854 * 4 2 1 6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46947 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46891 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46994 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99838 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99810 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00437 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99747 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47412 * 59.99692 * 15 13 11 17 17 H 1.48498 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46851 * 299.99415 * 15 13 11 19 19 C 1.50703 * 109.46692 * 240.00363 * 2 1 3 20 20 C 1.38242 * 119.97822 * 279.72427 * 19 2 1 21 21 C 1.38197 * 120.02970 * 179.72614 * 20 19 2 22 22 C 1.38455 * 119.97209 * 0.52925 * 21 20 19 23 23 F 1.35101 * 120.02738 * 179.72684 * 22 21 20 24 24 C 1.38461 * 119.94937 * 359.74490 * 22 21 20 25 25 C 1.38198 * 119.97177 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46762 * 299.99499 * 1 2 3 28 28 H 1.08996 * 109.47318 * 59.99471 * 1 2 3 29 29 H 1.09001 * 109.46953 * 299.99668 * 7 5 4 30 30 H 1.09000 * 109.47318 * 59.99266 * 7 5 4 31 31 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 32 32 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 33 33 H 1.08992 * 109.47554 * 299.99696 * 9 8 7 34 34 H 1.08996 * 109.47261 * 60.00229 * 9 8 7 35 35 H 1.08998 * 109.47844 * 299.99997 * 10 9 8 36 36 H 1.09001 * 109.47248 * 60.00689 * 10 9 8 37 37 H 0.96999 * 120.00397 * 180.02562 * 14 13 11 38 38 H 1.08003 * 119.98627 * 359.97438 * 20 19 2 39 39 H 1.08001 * 120.01281 * 180.24853 * 21 20 19 40 40 H 1.08001 * 120.01225 * 179.97438 * 24 22 21 41 41 H 1.08009 * 119.98272 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2173 0.0638 2.2810 6 8 1.9984 1.2517 2.2503 7 6 2.7196 -0.5773 3.5490 8 6 2.8635 0.4887 4.6371 9 6 3.3728 -0.1623 5.9246 10 6 3.5173 0.9037 7.0125 11 6 4.0184 0.2624 8.2809 12 1 4.2145 -0.7993 8.3081 13 6 4.2263 1.0311 9.4064 14 7 3.9880 2.3240 9.3731 15 14 4.8481 0.2362 10.9784 16 1 6.1685 -0.3944 10.7256 17 1 4.9871 1.2707 12.0347 18 1 3.8822 -0.7997 11.4248 19 6 2.0323 -0.7104 -1.2306 20 6 2.0718 -2.0918 -1.2629 21 6 2.5269 -2.7444 -2.3929 22 6 2.9536 -2.0139 -3.4889 23 9 3.4039 -2.6507 -4.5921 24 6 2.9189 -0.6302 -3.4533 25 6 2.4590 0.0201 -2.3239 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.0107 -1.3375 3.8772 30 1 3.6886 -1.0403 3.3629 31 1 3.5721 1.2492 4.3091 32 1 1.8941 0.9513 4.8231 33 1 2.6639 -0.9226 6.2524 34 1 4.3420 -0.6252 5.7389 35 1 4.2264 1.6638 6.6846 36 1 2.5483 1.3669 7.1983 37 1 4.1346 2.8648 10.1649 38 1 1.7431 -2.6614 -0.4062 39 1 2.5538 -3.8238 -2.4193 40 1 3.2520 -0.0593 -4.3075 41 1 2.4323 1.0995 -2.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:58 Heat of formation + Delta-G solvation = -153.395999 kcal Electronic energy + Delta-G solvation = -22043.012284 eV Core-core repulsion = 18414.714128 eV Total energy + Delta-G solvation = -3628.298156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.93802 -41.74959 -40.12327 -37.85261 -36.60827 -34.67267 -33.92129 -32.15761 -31.58461 -29.98163 -27.76704 -25.38842 -24.39951 -23.99813 -22.38437 -21.72101 -21.27799 -18.77185 -18.71638 -18.37990 -17.84913 -17.43437 -17.13454 -16.62897 -16.52050 -16.12061 -16.00274 -15.22804 -14.82876 -14.62536 -14.50113 -14.43627 -14.13147 -13.92413 -13.65437 -13.55135 -13.31780 -13.19764 -12.89113 -12.79048 -12.38858 -12.22004 -12.17850 -12.15806 -11.92151 -11.76632 -11.55200 -11.36716 -11.28421 -11.04231 -10.52895 -10.11452 -9.67750 -8.17550 -6.29245 -0.00534 0.22982 1.20237 1.41597 1.45194 1.52923 1.63145 2.43011 2.54070 3.15269 3.22509 3.44239 3.68302 3.75088 3.92386 3.98325 4.03044 4.08077 4.12183 4.31025 4.40353 4.50477 4.65698 4.69337 4.75126 4.80624 4.87887 4.90823 4.96100 5.10734 5.10817 5.16355 5.17845 5.28265 5.33987 5.39500 5.53970 5.58675 5.79421 5.84037 5.89623 6.26728 6.75315 6.89139 7.40183 8.94262 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033773 B = 0.002092 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.875926 B =13378.519762 C =13766.573708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.085 0.915 4 O -0.348 6.348 5 C 0.466 3.534 6 O -0.540 6.540 7 C -0.103 4.103 8 C -0.100 4.100 9 C -0.096 4.096 10 C 0.018 3.982 11 C -0.542 4.542 12 H 0.066 0.934 13 C -0.007 4.007 14 N -0.937 5.937 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.108 4.108 20 C -0.067 4.067 21 C -0.156 4.156 22 C 0.085 3.915 23 F -0.147 7.147 24 C -0.154 4.154 25 C -0.079 4.079 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.062 0.938 35 H -0.014 1.014 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 -10.507 -27.391 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.103 0.897 4 O -0.265 6.265 5 C 0.311 3.689 6 O -0.429 6.429 7 C -0.140 4.140 8 C -0.138 4.138 9 C -0.134 4.134 10 C -0.019 4.019 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.108 4.108 20 C -0.085 4.085 21 C -0.175 4.175 22 C 0.066 3.934 23 F -0.126 7.126 24 C -0.173 4.173 25 C -0.097 4.097 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.005 0.995 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.166 0.834 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.629 -10.029 -27.388 29.705 hybrid contribution 0.341 0.329 0.684 0.832 sum -5.288 -9.700 -26.704 28.899 Atomic orbital electron populations 1.22175 0.92009 1.04037 1.03537 1.21521 0.95550 0.95963 0.80116 0.89679 1.86560 1.77017 1.42496 1.20411 1.24276 0.73166 0.85641 0.85785 1.90662 1.49369 1.18318 1.84580 1.21500 1.05462 0.99731 0.87344 1.21349 1.01170 0.97258 0.94009 1.21439 1.00686 0.98096 0.93171 1.19057 0.94576 0.94487 0.93757 1.21731 1.43932 0.95222 0.97092 0.91595 1.26073 0.95878 0.95385 1.03071 1.70115 1.50286 1.06728 1.30598 0.85459 0.79276 0.78039 0.78017 1.18990 1.21168 1.18952 1.19716 1.02036 0.94537 0.94511 1.21046 0.96256 0.93560 0.97615 1.21380 1.01696 1.01907 0.92478 1.18038 0.99980 0.91371 0.84048 1.91491 1.86932 1.82437 1.51743 1.21318 1.02864 0.92425 1.00677 1.21061 0.95847 1.01295 0.91524 0.90341 0.92718 0.88914 0.85183 0.85462 0.93196 0.93041 0.91804 0.91936 0.99543 0.99471 0.92882 0.83395 0.82919 0.82748 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.53 71.98 0.69 -1.79 16 2 C 0.12 2.26 2.77 29.85 0.08 2.34 16 3 H 0.09 1.75 7.02 -2.39 -0.02 1.74 16 4 O -0.35 -7.43 9.20 -51.33 -0.47 -7.90 16 5 C 0.47 12.11 7.93 71.24 0.56 12.68 16 6 O -0.54 -17.79 15.20 21.96 0.33 -17.46 16 7 C -0.10 -2.43 5.81 29.85 0.17 -2.25 16 8 C -0.10 -3.35 4.50 30.59 0.14 -3.22 16 9 C -0.10 -3.76 5.15 30.59 0.16 -3.60 16 10 C 0.02 0.98 4.97 29.85 0.15 1.13 16 11 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 12 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 13 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 14 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 15 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 C -0.11 -1.69 4.98 -19.86 -0.10 -1.79 16 20 C -0.07 -0.96 9.35 22.26 0.21 -0.76 16 21 C -0.16 -2.17 10.03 22.31 0.22 -1.95 16 22 C 0.08 1.33 7.30 22.37 0.16 1.49 16 23 F -0.15 -2.59 17.27 44.97 0.78 -1.81 16 24 C -0.15 -2.07 10.03 22.31 0.22 -1.84 16 25 C -0.08 -1.07 9.67 22.26 0.22 -0.85 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.13 2.42 8.14 -2.39 -0.02 2.41 16 30 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 32 H 0.05 1.86 8.10 -2.38 -0.02 1.84 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.15 1.83 7.77 -2.91 -0.02 1.81 16 39 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.15 1.48 8.04 -2.91 -0.02 1.46 16 Total: -1.00 -70.67 356.86 7.54 -63.13 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.00 Total: 6.65 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.58 Total: -31.03 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.28 Total: -57.98 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.14 Total: -25.36 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.67 7.54 -63.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.262 kcal (2) G-P(sol) polarization free energy of solvation -70.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds