Wall clock time and date at job start Tue Mar 31 2020 07:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47044 * 2 1 4 4 O 1.45201 * 109.46978 * 240.00749 * 2 1 3 5 5 C 1.34224 * 117.00569 * 89.99669 * 4 2 1 6 6 O 1.20830 * 119.99919 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00213 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47147 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47319 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47154 * 179.97438 * 9 8 7 11 11 C 1.50711 * 109.46855 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00155 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99661 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00170 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99751 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47165 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47025 * 120.00423 * 15 13 11 18 18 H 1.48504 * 109.47065 * 239.99997 * 15 13 11 19 19 C 1.50696 * 109.47580 * 120.00484 * 2 1 3 20 20 C 1.38248 * 119.97128 * 264.99837 * 19 2 1 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 2 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38196 * 119.97501 * 359.51590 * 24 22 21 26 26 H 1.08991 * 109.47381 * 59.99788 * 1 2 3 27 27 H 1.09003 * 109.46594 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46871 * 299.99541 * 1 2 3 29 29 H 1.08996 * 109.46825 * 299.99784 * 7 5 4 30 30 H 1.08997 * 109.47249 * 60.00070 * 7 5 4 31 31 H 1.09006 * 109.46784 * 300.00113 * 8 7 5 32 32 H 1.08996 * 109.47558 * 59.99787 * 8 7 5 33 33 H 1.08998 * 109.47094 * 300.00122 * 9 8 7 34 34 H 1.09005 * 109.47458 * 59.99771 * 9 8 7 35 35 H 1.08996 * 109.47374 * 299.99675 * 10 9 8 36 36 H 1.09002 * 109.47484 * 60.00407 * 10 9 8 37 37 H 0.97002 * 120.00296 * 180.02562 * 14 13 11 38 38 H 1.08001 * 119.98881 * 0.02562 * 20 19 2 39 39 H 1.07996 * 120.01603 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 41 41 H 1.07993 * 119.98776 * 180.24915 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6843 -1.1857 5 6 2.2171 0.0641 -2.2812 6 8 1.9972 1.2519 -2.2506 7 6 2.7181 -0.5770 -3.5496 8 6 2.8634 0.4893 -4.6371 9 6 3.3715 -0.1616 -5.9251 10 6 3.5161 0.9046 -7.0128 11 6 4.0172 0.2634 -8.2813 12 1 4.2125 -0.7984 -8.3090 13 6 4.2253 1.0322 -9.4067 14 7 3.9870 2.3251 -9.3732 15 14 4.8457 0.2374 -10.9792 16 1 5.0340 -1.2187 -10.7569 17 1 3.8544 0.4478 -12.0647 18 1 6.1414 0.8511 -11.3663 19 6 2.0324 -0.7105 1.2303 20 6 2.3611 0.0145 2.3607 21 6 2.8215 -0.6360 3.4897 22 6 2.9540 -2.0142 3.4884 23 9 3.4044 -2.6511 4.5915 24 6 2.6299 -2.7387 2.3538 25 6 2.1651 -2.0865 1.2276 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 3.6870 -1.0406 -3.3641 30 1 2.0086 -1.3367 -3.8776 31 1 1.8946 0.9534 -4.8226 32 1 3.5731 1.2487 -4.3090 33 1 4.3400 -0.6260 -5.7399 34 1 2.6614 -0.9208 -6.2532 35 1 2.5474 1.3685 -7.1979 36 1 4.2260 1.6640 -6.6851 37 1 4.1330 2.8660 -10.1650 38 1 2.2573 1.0895 2.3616 39 1 3.0786 -0.0695 4.3725 40 1 2.7366 -3.8135 2.3503 41 1 1.9084 -2.6518 0.3439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:01 Heat of formation + Delta-G solvation = -138.069650 kcal Electronic energy + Delta-G solvation = -22044.647745 eV Core-core repulsion = 18417.014190 eV Total energy + Delta-G solvation = -3627.633556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.27181 -40.79104 -39.41779 -36.85232 -34.99497 -33.25361 -32.62716 -31.57325 -29.94933 -29.30217 -26.07478 -24.37710 -23.60658 -22.77299 -21.38441 -20.38413 -20.04195 -18.12617 -17.72822 -17.01394 -16.44756 -16.41135 -16.16839 -15.96246 -15.31874 -14.78774 -14.57394 -14.40105 -13.99424 -13.85023 -13.69499 -13.35997 -13.00954 -12.68390 -12.59510 -12.33226 -12.11997 -11.79531 -11.66862 -11.53817 -11.25150 -11.03194 -10.88837 -10.61603 -10.55364 -10.48153 -10.37987 -9.66770 -9.54011 -9.30729 -9.04369 -9.00337 -8.33085 -5.97653 -4.00153 0.63686 0.80513 2.24932 2.53652 3.14984 3.32043 3.39423 3.43365 3.83703 4.14439 4.30430 4.45753 4.47432 4.62917 4.74887 4.81830 4.87839 5.00108 5.17652 5.25173 5.35235 5.38002 5.40168 5.47701 5.56401 5.68626 5.70539 5.76464 5.81031 6.03177 6.03863 6.18424 6.38855 6.43278 6.46497 6.74927 6.93055 7.14729 7.71190 7.77550 7.85611 8.03154 8.44900 9.07636 9.63776 11.13677 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.002094 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.641600 B =13369.791147 C =13778.914784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 H 0.096 0.904 4 O -0.354 6.354 5 C 0.461 3.539 6 O -0.503 6.503 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.019 3.981 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.054 3.946 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.099 4.099 20 C -0.078 4.078 21 C -0.154 4.154 22 C 0.100 3.900 23 F -0.140 7.140 24 C -0.155 4.155 25 C -0.063 4.063 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 -8.422 26.858 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.071 3.929 3 H 0.114 0.886 4 O -0.272 6.272 5 C 0.305 3.695 6 O -0.390 6.390 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.018 4.018 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.099 4.099 20 C -0.096 4.096 21 C -0.173 4.173 22 C 0.080 3.920 23 F -0.119 7.119 24 C -0.173 4.173 25 C -0.081 4.081 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.820 -7.922 26.835 28.578 hybrid contribution 0.412 -0.332 -0.599 0.799 sum -5.407 -8.253 26.235 28.030 Atomic orbital electron populations 1.22182 0.93049 1.03406 1.03472 1.21353 0.94642 0.96425 0.80442 0.88623 1.86576 1.77375 1.42859 1.20423 1.24234 0.73966 0.86182 0.85164 1.90666 1.47618 1.16780 1.83946 1.21621 1.03339 1.00963 0.88998 1.21579 1.02692 0.96521 0.93806 1.21649 0.99412 0.99792 0.93908 1.19106 0.97195 0.93500 0.91972 1.21310 1.43880 0.94567 0.96059 0.92634 1.25049 0.95748 0.94858 0.98982 1.69981 1.49229 1.05005 1.29240 0.86546 0.78478 0.79522 0.83504 1.19754 1.21057 1.21045 1.19726 1.01420 0.94249 0.94527 1.20836 0.96818 1.00353 0.91622 1.21096 1.03301 0.92648 1.00207 1.17794 0.99605 0.90854 0.83714 1.91510 1.86680 1.82215 1.51466 1.21211 1.02587 1.01084 0.92459 1.20937 0.95884 0.93692 0.97594 0.91189 0.91298 0.90577 0.87865 0.87831 0.91534 0.91542 0.93199 0.93198 0.96536 0.96544 0.93081 0.84656 0.84432 0.84428 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.53 37.16 0.35 -1.01 16 2 C 0.13 1.23 2.77 -27.88 -0.08 1.15 16 3 H 0.10 1.00 7.07 -51.93 -0.37 0.64 16 4 O -0.35 -4.05 9.02 -39.24 -0.35 -4.40 16 5 C 0.46 6.22 7.93 36.00 0.29 6.51 16 6 O -0.50 -8.25 15.20 -18.75 -0.29 -8.53 16 7 C -0.11 -1.43 5.81 -27.88 -0.16 -1.59 16 8 C -0.11 -1.82 4.50 -26.73 -0.12 -1.95 16 9 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 10 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 11 C -0.52 -14.78 9.11 -34.43 -0.31 -15.09 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.10 -0.85 5.01 -104.62 -0.52 -1.38 16 20 C -0.08 -0.58 9.68 -39.59 -0.38 -0.97 16 21 C -0.15 -1.15 10.03 -39.52 -0.40 -1.55 16 22 C 0.10 0.85 7.30 -39.42 -0.29 0.56 16 23 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 24 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 25 C -0.06 -0.52 9.35 -39.59 -0.37 -0.89 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.14 1.04 7.62 -52.49 -0.40 0.64 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -32.30 356.66 -8.50 -40.80 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.22 Total: -3.91 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.77 Total: -18.27 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.64 Total: -12.93 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.30 -8.50 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.267 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds