Wall clock time and date at job start Tue Mar 31 2020 07:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47044 * 2 1 4 4 O 1.45201 * 109.46978 * 240.00749 * 2 1 3 5 5 C 1.34224 * 117.00569 * 89.99669 * 4 2 1 6 6 O 1.20830 * 119.99919 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00213 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47147 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47319 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47154 * 179.97438 * 9 8 7 11 11 C 1.50711 * 109.46855 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00155 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99661 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00170 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99751 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47165 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47025 * 120.00423 * 15 13 11 18 18 H 1.48504 * 109.47065 * 239.99997 * 15 13 11 19 19 C 1.50696 * 109.47580 * 120.00484 * 2 1 3 20 20 C 1.38248 * 119.97128 * 264.99837 * 19 2 1 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 2 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38196 * 119.97501 * 359.51590 * 24 22 21 26 26 H 1.08991 * 109.47381 * 59.99788 * 1 2 3 27 27 H 1.09003 * 109.46594 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46871 * 299.99541 * 1 2 3 29 29 H 1.08996 * 109.46825 * 299.99784 * 7 5 4 30 30 H 1.08997 * 109.47249 * 60.00070 * 7 5 4 31 31 H 1.09006 * 109.46784 * 300.00113 * 8 7 5 32 32 H 1.08996 * 109.47558 * 59.99787 * 8 7 5 33 33 H 1.08998 * 109.47094 * 300.00122 * 9 8 7 34 34 H 1.09005 * 109.47458 * 59.99771 * 9 8 7 35 35 H 1.08996 * 109.47374 * 299.99675 * 10 9 8 36 36 H 1.09002 * 109.47484 * 60.00407 * 10 9 8 37 37 H 0.97002 * 120.00296 * 180.02562 * 14 13 11 38 38 H 1.08001 * 119.98881 * 0.02562 * 20 19 2 39 39 H 1.07996 * 120.01603 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 41 41 H 1.07993 * 119.98776 * 180.24915 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6843 -1.1857 5 6 2.2171 0.0641 -2.2812 6 8 1.9972 1.2519 -2.2506 7 6 2.7181 -0.5770 -3.5496 8 6 2.8634 0.4893 -4.6371 9 6 3.3715 -0.1616 -5.9251 10 6 3.5161 0.9046 -7.0128 11 6 4.0172 0.2634 -8.2813 12 1 4.2125 -0.7984 -8.3090 13 6 4.2253 1.0322 -9.4067 14 7 3.9870 2.3251 -9.3732 15 14 4.8457 0.2374 -10.9792 16 1 5.0340 -1.2187 -10.7569 17 1 3.8544 0.4478 -12.0647 18 1 6.1414 0.8511 -11.3663 19 6 2.0324 -0.7105 1.2303 20 6 2.3611 0.0145 2.3607 21 6 2.8215 -0.6360 3.4897 22 6 2.9540 -2.0142 3.4884 23 9 3.4044 -2.6511 4.5915 24 6 2.6299 -2.7387 2.3538 25 6 2.1651 -2.0865 1.2276 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 3.6870 -1.0406 -3.3641 30 1 2.0086 -1.3367 -3.8776 31 1 1.8946 0.9534 -4.8226 32 1 3.5731 1.2487 -4.3090 33 1 4.3400 -0.6260 -5.7399 34 1 2.6614 -0.9208 -6.2532 35 1 2.5474 1.3685 -7.1979 36 1 4.2260 1.6640 -6.6851 37 1 4.1330 2.8660 -10.1650 38 1 2.2573 1.0895 2.3616 39 1 3.0786 -0.0695 4.3725 40 1 2.7366 -3.8135 2.3503 41 1 1.9084 -2.6518 0.3439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:01 Heat of formation + Delta-G solvation = -153.534283 kcal Electronic energy + Delta-G solvation = -22045.318342 eV Core-core repulsion = 18417.014190 eV Total energy + Delta-G solvation = -3628.304152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.93421 -41.75142 -40.12069 -37.85373 -36.60937 -34.67515 -33.92246 -32.15173 -31.58534 -29.98519 -27.77121 -25.39206 -24.38639 -24.00311 -22.38139 -21.72255 -21.27964 -18.77191 -18.71938 -18.38846 -17.84605 -17.43762 -17.11629 -16.62761 -16.51662 -16.11752 -16.01269 -15.22763 -14.84157 -14.62801 -14.50089 -14.44207 -14.11826 -13.93968 -13.64292 -13.55612 -13.32352 -13.20138 -12.89496 -12.84054 -12.33117 -12.21078 -12.17875 -12.16405 -11.91456 -11.77599 -11.55860 -11.37196 -11.27530 -11.02922 -10.54539 -10.11267 -9.66520 -8.18148 -6.29591 0.00475 0.23192 1.20155 1.41562 1.41928 1.55425 1.62216 2.42633 2.53550 3.14950 3.22779 3.44286 3.68522 3.75602 3.92516 3.98386 4.03236 4.07848 4.12265 4.31248 4.40620 4.50489 4.65725 4.69354 4.75105 4.80666 4.87910 4.91084 4.96283 5.10763 5.11193 5.16338 5.17700 5.28601 5.34045 5.39637 5.54270 5.58933 5.79332 5.84333 5.89600 6.26571 6.75187 6.89252 7.39953 8.94121 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.002094 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.641600 B =13369.791147 C =13778.914784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.086 0.914 4 O -0.348 6.348 5 C 0.466 3.534 6 O -0.540 6.540 7 C -0.103 4.103 8 C -0.100 4.100 9 C -0.096 4.096 10 C 0.018 3.982 11 C -0.539 4.539 12 H 0.066 0.934 13 C -0.007 4.007 14 N -0.937 5.937 15 Si 0.968 3.032 16 H -0.258 1.258 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.107 4.107 20 C -0.080 4.080 21 C -0.154 4.154 22 C 0.084 3.916 23 F -0.147 7.147 24 C -0.156 4.156 25 C -0.068 4.068 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.063 0.937 35 H -0.013 1.013 36 H -0.014 1.014 37 H 0.262 0.738 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 -10.471 27.409 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 H 0.104 0.896 4 O -0.265 6.265 5 C 0.311 3.689 6 O -0.429 6.429 7 C -0.140 4.140 8 C -0.138 4.138 9 C -0.134 4.134 10 C -0.019 4.019 11 C -0.577 4.577 12 H 0.084 0.916 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.792 3.208 16 H -0.181 1.181 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.108 4.108 20 C -0.097 4.097 21 C -0.172 4.172 22 C 0.065 3.935 23 F -0.126 7.126 24 C -0.175 4.175 25 C -0.086 4.086 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.006 0.994 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.170 0.830 39 H 0.173 0.827 40 H 0.170 0.830 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.638 -10.002 27.410 29.717 hybrid contribution 0.338 0.340 -0.700 0.849 sum -5.300 -9.662 26.710 28.894 Atomic orbital electron populations 1.22172 0.91990 1.04001 1.03576 1.21510 0.95531 0.95967 0.80124 0.89634 1.86550 1.77028 1.42481 1.20427 1.24278 0.73161 0.85635 0.85781 1.90664 1.49341 1.18335 1.84585 1.21499 1.05485 0.99725 0.87323 1.21349 1.01171 0.97257 0.94013 1.21440 1.00699 0.98090 0.93163 1.19067 0.94591 0.94501 0.93782 1.21788 1.43686 0.95205 0.97064 0.91596 1.26073 0.95911 0.95390 1.03084 1.70128 1.50420 1.06739 1.30482 0.85354 0.77785 0.79121 0.78505 1.18143 1.20549 1.20563 1.19725 1.02173 0.94556 0.94300 1.21039 0.96258 1.01260 0.91190 1.21315 1.02632 0.92453 1.00814 1.18040 1.00236 0.91458 0.83801 1.91491 1.86875 1.82406 1.51848 1.21382 1.02064 1.01932 0.92076 1.21043 0.95988 0.93606 0.97999 0.92709 0.90421 0.88847 0.85447 0.85166 0.93047 0.93193 0.91923 0.91811 0.99443 0.99527 0.92889 0.82995 0.82717 0.82971 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.53 71.98 0.69 -1.78 16 2 C 0.12 2.26 2.77 29.85 0.08 2.34 16 3 H 0.09 1.76 7.07 -2.38 -0.02 1.74 16 4 O -0.35 -7.39 9.02 -51.36 -0.46 -7.86 16 5 C 0.47 12.08 7.93 71.24 0.56 12.64 16 6 O -0.54 -17.76 15.20 21.95 0.33 -17.43 16 7 C -0.10 -2.41 5.81 29.85 0.17 -2.24 16 8 C -0.10 -3.35 4.50 30.59 0.14 -3.21 16 9 C -0.10 -3.76 5.15 30.59 0.16 -3.60 16 10 C 0.02 0.94 4.97 29.85 0.15 1.09 16 11 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 12 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 13 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 14 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 15 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C -0.11 -1.68 5.01 -19.86 -0.10 -1.78 16 20 C -0.08 -1.06 9.68 22.26 0.22 -0.84 16 21 C -0.15 -2.04 10.03 22.31 0.22 -1.82 16 22 C 0.08 1.31 7.30 22.38 0.16 1.48 16 23 F -0.15 -2.60 17.27 44.97 0.78 -1.82 16 24 C -0.16 -2.20 10.03 22.31 0.22 -1.98 16 25 C -0.07 -1.00 9.35 22.26 0.21 -0.79 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.05 1.85 8.10 -2.38 -0.02 1.83 16 32 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.15 1.89 7.62 -2.91 -0.02 1.87 16 Total: -1.00 -70.73 356.66 7.54 -63.18 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.00 Total: 6.43 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.58 Total: -30.99 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.28 Total: -57.95 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.13 Total: -25.29 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.73 7.54 -63.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.351 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds