Wall clock time and date at job start Tue Mar 31 2020 07:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47024 * 2 1 4 4 O 1.45201 * 109.46878 * 119.99898 * 2 1 3 5 5 C 1.34227 * 117.00079 * 269.99790 * 4 2 1 6 6 O 1.20824 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00051 * 179.97438 * 5 4 2 8 8 C 1.52997 * 109.47282 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47325 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47325 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47342 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99940 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99996 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00251 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47204 * 89.99967 * 15 13 11 17 17 H 1.48507 * 109.46988 * 210.00270 * 15 13 11 18 18 H 1.48500 * 109.46770 * 329.99919 * 15 13 11 19 19 C 1.50699 * 109.47010 * 239.99840 * 2 1 3 20 20 C 1.38264 * 119.99175 * 280.02055 * 19 2 1 21 21 C 1.38224 * 120.05371 * 180.02562 * 20 19 2 22 22 C 1.38215 * 120.02235 * 359.97438 * 21 20 19 23 23 C 1.38437 * 119.97975 * 359.70450 * 22 21 20 24 24 F 1.35099 * 120.02745 * 180.31857 * 23 22 21 25 25 C 1.38183 * 119.98467 * 100.00482 * 19 2 1 26 26 H 1.08993 * 109.47453 * 299.99624 * 1 2 3 27 27 H 1.09000 * 109.47242 * 60.00098 * 1 2 3 28 28 H 1.09007 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47375 * 300.00318 * 7 5 4 30 30 H 1.09006 * 109.46794 * 60.00452 * 7 5 4 31 31 H 1.09003 * 109.46803 * 300.00213 * 8 7 5 32 32 H 1.08994 * 109.47291 * 59.99877 * 8 7 5 33 33 H 1.09003 * 109.46890 * 299.99591 * 9 8 7 34 34 H 1.08994 * 109.47501 * 59.99436 * 9 8 7 35 35 H 1.08998 * 109.47244 * 299.99576 * 10 9 8 36 36 H 1.09006 * 109.47209 * 59.99681 * 10 9 8 37 37 H 0.97001 * 120.00615 * 179.97438 * 14 13 11 38 38 H 1.08004 * 119.96758 * 359.97438 * 20 19 2 39 39 H 1.08000 * 119.98735 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00869 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.01017 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2517 2.2505 7 6 2.7181 -0.5772 3.5495 8 6 2.8623 0.4888 4.6374 9 6 3.3716 -0.1621 5.9250 10 6 3.5151 0.9039 7.0131 11 6 4.0162 0.2626 8.2816 12 1 4.2122 -0.7991 8.3090 13 6 4.2233 1.0312 9.4073 14 7 4.6601 0.4716 10.5144 15 14 3.8836 2.8675 9.3601 16 1 2.4733 3.1202 9.7503 17 1 4.7916 3.5633 10.3072 18 1 4.1162 3.3787 7.9854 19 6 2.0323 -0.7104 -1.2304 20 6 2.0662 -2.0922 -1.2653 21 6 2.5272 -2.7452 -2.3930 22 6 2.9543 -2.0172 -3.4875 23 6 2.9146 -0.6337 -3.4564 24 9 3.3259 0.0787 -4.5281 25 6 2.4586 0.0194 -2.3236 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.0086 -1.3369 3.8775 30 1 3.6871 -1.0409 3.3640 31 1 3.5717 1.2488 4.3097 32 1 1.8933 0.9522 4.8228 33 1 2.6625 -0.9222 6.2529 34 1 4.3406 -0.6252 5.7394 35 1 4.2240 1.6643 6.6856 36 1 2.5458 1.3666 7.1987 37 1 4.8062 1.0123 11.3064 38 1 1.7330 -2.6618 -0.4102 39 1 2.5529 -3.8245 -2.4192 40 1 3.3141 -2.5276 -4.3687 41 1 2.4313 1.0987 -2.2965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:04 Heat of formation + Delta-G solvation = -134.247057 kcal Electronic energy + Delta-G solvation = -22150.273708 eV Core-core repulsion = 18522.805913 eV Total energy + Delta-G solvation = -3627.467795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.28559 -40.85261 -39.45212 -36.93867 -35.13542 -33.48563 -32.61297 -31.06450 -30.34614 -29.67559 -26.40299 -24.65908 -23.28516 -22.76105 -21.37479 -20.35497 -20.10708 -18.08004 -17.72648 -16.65490 -16.61501 -16.50299 -16.43659 -16.11682 -15.96139 -14.88549 -14.69643 -14.24871 -14.11987 -13.81578 -13.61494 -13.36214 -12.82435 -12.67087 -12.53407 -12.44636 -12.25257 -12.11820 -11.96105 -11.78511 -11.25061 -11.17987 -10.94151 -10.81965 -10.60914 -10.52059 -9.89770 -9.70020 -9.57134 -9.47281 -9.15628 -9.12315 -8.51518 -6.02413 -4.00242 0.63390 0.73582 2.17786 2.46436 3.13274 3.33367 3.40667 3.45814 3.76052 4.09045 4.32147 4.47895 4.54426 4.56243 4.71634 4.74036 4.81729 4.91746 5.07995 5.16983 5.22604 5.32157 5.33187 5.41681 5.58251 5.62784 5.64431 5.72721 5.87004 5.92349 5.95549 6.04036 6.28877 6.35330 6.41369 6.58974 6.73084 6.93244 7.33379 7.46141 7.70022 7.82157 8.55821 9.02443 9.60600 11.10998 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.002222 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.849617 B =12598.080684 C =12755.355417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.125 3.875 3 H 0.096 0.904 4 O -0.352 6.352 5 C 0.462 3.538 6 O -0.505 6.505 7 C -0.112 4.112 8 C -0.111 4.111 9 C -0.102 4.102 10 C -0.015 4.015 11 C -0.520 4.520 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.060 4.060 20 C -0.102 4.102 21 C -0.091 4.091 22 C -0.150 4.150 23 C 0.097 3.903 24 F -0.139 7.139 25 C -0.142 4.142 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -5.758 -29.737 31.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.114 0.886 4 O -0.270 6.270 5 C 0.305 3.695 6 O -0.392 6.392 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.140 4.140 10 C -0.053 4.053 11 C -0.558 4.558 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.061 4.061 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.169 4.169 23 C 0.078 3.922 24 F -0.117 7.117 25 C -0.161 4.161 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.341 -5.317 -29.635 30.990 hybrid contribution -0.071 1.218 -0.176 1.232 sum -7.413 -4.099 -29.811 30.991 Atomic orbital electron populations 1.22182 0.92851 1.03524 1.03546 1.21370 0.94790 0.96414 0.80419 0.88613 1.86589 1.77327 1.42752 1.20323 1.24223 0.73924 0.86154 0.85192 1.90661 1.47721 1.16805 1.83983 1.21597 1.03565 1.00869 0.88880 1.21610 1.02630 0.96687 0.93976 1.21473 1.00169 0.99264 0.93070 1.19577 0.96367 0.94911 0.94414 1.21167 1.43926 0.96711 0.94002 0.91044 1.25047 0.94649 0.98544 0.95392 1.69919 1.46589 1.36069 1.01837 0.86773 0.78304 0.85938 0.78263 1.20317 1.21439 1.18936 1.19449 0.98758 0.94094 0.93754 1.21149 0.98742 0.93614 0.98481 1.21078 0.97160 1.00477 0.92232 1.21231 1.02859 0.92078 1.00739 1.17581 1.00389 0.89736 0.84469 1.91515 1.88061 1.78465 1.53706 1.20948 1.01505 1.01070 0.92565 0.91110 0.90534 0.91153 0.87645 0.87675 0.91537 0.91520 0.92581 0.92554 0.96584 0.97021 0.92788 0.84473 0.84575 0.84589 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.53 37.16 0.35 -0.97 16 2 C 0.12 1.20 2.76 -27.88 -0.08 1.13 16 3 H 0.10 1.01 7.02 -51.93 -0.36 0.64 16 4 O -0.35 -3.91 9.21 -39.25 -0.36 -4.27 16 5 C 0.46 5.98 7.93 36.00 0.29 6.27 16 6 O -0.50 -7.96 15.20 -18.75 -0.29 -8.25 16 7 C -0.11 -1.35 5.81 -27.89 -0.16 -1.51 16 8 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 9 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 10 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 11 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 19 C -0.06 -0.52 4.98 -104.63 -0.52 -1.04 16 20 C -0.10 -0.78 9.36 -39.58 -0.37 -1.15 16 21 C -0.09 -0.59 10.04 -39.60 -0.40 -0.99 16 22 C -0.15 -1.06 10.03 -39.52 -0.40 -1.46 16 23 C 0.10 0.84 7.30 -39.42 -0.29 0.55 16 24 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 25 C -0.14 -1.21 9.65 -39.51 -0.38 -1.59 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.14 0.93 7.78 -52.48 -0.41 0.53 16 39 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.14 1.01 8.04 -52.49 -0.42 0.59 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -32.73 353.28 -8.13 -40.86 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -6.19 Total: -3.83 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -2.75 Total: -18.61 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 0.77 Total: -27.35 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.65 Total: -12.52 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.73 -8.13 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.391 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds