Wall clock time and date at job start Tue Mar 31 2020 07:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47024 * 2 1 4 4 O 1.45201 * 109.46878 * 119.99898 * 2 1 3 5 5 C 1.34227 * 117.00079 * 269.99790 * 4 2 1 6 6 O 1.20824 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00051 * 179.97438 * 5 4 2 8 8 C 1.52997 * 109.47282 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47325 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47325 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47342 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99940 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99996 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00251 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47204 * 89.99967 * 15 13 11 17 17 H 1.48507 * 109.46988 * 210.00270 * 15 13 11 18 18 H 1.48500 * 109.46770 * 329.99919 * 15 13 11 19 19 C 1.50699 * 109.47010 * 239.99840 * 2 1 3 20 20 C 1.38264 * 119.99175 * 280.02055 * 19 2 1 21 21 C 1.38224 * 120.05371 * 180.02562 * 20 19 2 22 22 C 1.38215 * 120.02235 * 359.97438 * 21 20 19 23 23 C 1.38437 * 119.97975 * 359.70450 * 22 21 20 24 24 F 1.35099 * 120.02745 * 180.31857 * 23 22 21 25 25 C 1.38183 * 119.98467 * 100.00482 * 19 2 1 26 26 H 1.08993 * 109.47453 * 299.99624 * 1 2 3 27 27 H 1.09000 * 109.47242 * 60.00098 * 1 2 3 28 28 H 1.09007 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47375 * 300.00318 * 7 5 4 30 30 H 1.09006 * 109.46794 * 60.00452 * 7 5 4 31 31 H 1.09003 * 109.46803 * 300.00213 * 8 7 5 32 32 H 1.08994 * 109.47291 * 59.99877 * 8 7 5 33 33 H 1.09003 * 109.46890 * 299.99591 * 9 8 7 34 34 H 1.08994 * 109.47501 * 59.99436 * 9 8 7 35 35 H 1.08998 * 109.47244 * 299.99576 * 10 9 8 36 36 H 1.09006 * 109.47209 * 59.99681 * 10 9 8 37 37 H 0.97001 * 120.00615 * 179.97438 * 14 13 11 38 38 H 1.08004 * 119.96758 * 359.97438 * 20 19 2 39 39 H 1.08000 * 119.98735 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.00869 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.01017 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2811 6 8 1.9974 1.2517 2.2505 7 6 2.7181 -0.5772 3.5495 8 6 2.8623 0.4888 4.6374 9 6 3.3716 -0.1621 5.9250 10 6 3.5151 0.9039 7.0131 11 6 4.0162 0.2626 8.2816 12 1 4.2122 -0.7991 8.3090 13 6 4.2233 1.0312 9.4073 14 7 4.6601 0.4716 10.5144 15 14 3.8836 2.8675 9.3601 16 1 2.4733 3.1202 9.7503 17 1 4.7916 3.5633 10.3072 18 1 4.1162 3.3787 7.9854 19 6 2.0323 -0.7104 -1.2304 20 6 2.0662 -2.0922 -1.2653 21 6 2.5272 -2.7452 -2.3930 22 6 2.9543 -2.0172 -3.4875 23 6 2.9146 -0.6337 -3.4564 24 9 3.3259 0.0787 -4.5281 25 6 2.4586 0.0194 -2.3236 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.0086 -1.3369 3.8775 30 1 3.6871 -1.0409 3.3640 31 1 3.5717 1.2488 4.3097 32 1 1.8933 0.9522 4.8228 33 1 2.6625 -0.9222 6.2529 34 1 4.3406 -0.6252 5.7394 35 1 4.2240 1.6643 6.6856 36 1 2.5458 1.3666 7.1987 37 1 4.8062 1.0123 11.3064 38 1 1.7330 -2.6618 -0.4102 39 1 2.5529 -3.8245 -2.4192 40 1 3.3141 -2.5276 -4.3687 41 1 2.4313 1.0987 -2.2965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:03 Heat of formation + Delta-G solvation = -150.651298 kcal Electronic energy + Delta-G solvation = -22150.985050 eV Core-core repulsion = 18522.805913 eV Total energy + Delta-G solvation = -3628.179137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.95163 -41.76961 -40.12106 -37.88862 -36.64913 -34.66847 -34.12713 -31.99758 -31.60033 -30.33315 -27.98925 -25.50717 -24.19750 -23.78161 -22.36131 -21.72452 -21.29556 -18.95192 -18.73968 -18.56677 -17.49915 -17.19973 -17.13796 -16.92928 -16.65113 -16.29679 -16.11676 -15.41577 -14.86109 -14.77480 -14.67105 -14.40902 -14.03007 -13.91867 -13.80800 -13.51020 -13.32725 -13.11050 -12.87731 -12.72133 -12.64270 -12.36006 -12.11904 -11.93739 -11.76383 -11.75418 -11.64631 -11.37280 -11.30552 -11.22329 -10.74962 -10.05485 -9.72748 -8.28488 -6.31604 0.04701 0.15598 1.18511 1.35781 1.37460 1.49794 1.59792 2.36734 2.55090 3.06990 3.12033 3.47312 3.68030 3.75545 3.94049 4.01975 4.02846 4.06410 4.11297 4.21185 4.37328 4.47139 4.61955 4.63096 4.70655 4.75724 4.81486 4.84750 5.02552 5.08200 5.10047 5.11067 5.18032 5.21496 5.31736 5.32945 5.52740 5.61042 5.66006 5.69579 5.85627 6.30664 6.72682 6.76909 7.33161 8.88041 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.002222 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.849617 B =12598.080684 C =12755.355417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 H 0.082 0.918 4 O -0.346 6.346 5 C 0.467 3.533 6 O -0.539 6.539 7 C -0.105 4.105 8 C -0.102 4.102 9 C -0.094 4.094 10 C -0.018 4.018 11 C -0.530 4.530 12 H 0.037 0.963 13 C 0.002 3.998 14 N -0.951 5.951 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.250 1.250 19 C -0.071 4.071 20 C -0.105 4.105 21 C -0.086 4.086 22 C -0.148 4.148 23 C 0.078 3.922 24 F -0.149 7.149 25 C -0.151 4.151 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.266 0.734 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -6.207 -31.508 33.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 H 0.100 0.900 4 O -0.263 6.263 5 C 0.312 3.688 6 O -0.428 6.428 7 C -0.143 4.143 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.055 4.055 11 C -0.568 4.568 12 H 0.055 0.945 13 C -0.195 4.195 14 N -0.592 5.592 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.174 1.174 19 C -0.071 4.071 20 C -0.123 4.123 21 C -0.104 4.104 22 C -0.167 4.167 23 C 0.059 3.941 24 F -0.127 7.127 25 C -0.170 4.170 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.174 0.826 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.044 -5.787 -31.434 32.959 hybrid contribution 0.166 1.243 0.345 1.300 sum -7.878 -4.545 -31.088 32.391 Atomic orbital electron populations 1.22165 0.91701 1.04258 1.03547 1.21488 0.95732 0.95791 0.80202 0.89996 1.86561 1.77021 1.42422 1.20320 1.24294 0.73150 0.85647 0.85743 1.90657 1.49348 1.18233 1.84578 1.21509 1.05418 0.99929 0.87396 1.21390 1.01749 0.97287 0.93551 1.21326 1.00775 0.97992 0.93086 1.19581 0.95969 0.96089 0.93855 1.21551 1.43521 0.95516 0.96191 0.94457 1.26014 0.94562 1.03918 0.94978 1.70064 1.48216 1.38158 1.02773 0.85686 0.78588 0.79556 0.78991 1.19209 1.20956 1.17417 1.19394 0.99785 0.94685 0.93250 1.21357 0.98490 0.93169 0.99313 1.21407 0.95794 1.01906 0.91257 1.21531 1.02009 0.91439 1.01700 1.17816 1.01360 0.90551 0.84365 1.91488 1.88305 1.78826 1.54114 1.21025 1.01789 1.01400 0.92798 0.92400 0.89227 0.90010 0.85265 0.85651 0.92456 0.92134 0.92104 0.92285 0.96687 0.96676 0.92565 0.83533 0.81651 0.82648 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.53 71.98 0.69 -1.71 16 2 C 0.12 2.24 2.76 29.85 0.08 2.33 16 3 H 0.08 1.73 7.02 -2.39 -0.02 1.71 16 4 O -0.35 -7.10 9.21 -51.39 -0.47 -7.57 16 5 C 0.47 11.38 7.93 71.23 0.56 11.94 16 6 O -0.54 -16.65 15.20 21.97 0.33 -16.32 16 7 C -0.11 -2.29 5.81 29.85 0.17 -2.11 16 8 C -0.10 -3.04 4.50 30.59 0.14 -2.90 16 9 C -0.09 -3.43 5.15 30.59 0.16 -3.28 16 10 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 11 C -0.53 -30.70 9.66 25.60 0.25 -30.46 16 12 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 13 C 0.00 0.11 5.47 84.65 0.46 0.57 16 14 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 15 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 19 C -0.07 -1.14 4.98 -19.87 -0.10 -1.24 16 20 C -0.11 -1.36 9.36 22.27 0.21 -1.15 16 21 C -0.09 -0.85 10.04 22.26 0.22 -0.63 16 22 C -0.15 -1.77 10.03 22.31 0.22 -1.55 16 23 C 0.08 1.27 7.30 22.38 0.16 1.44 16 24 F -0.15 -2.77 17.27 44.97 0.78 -1.99 16 25 C -0.15 -2.49 9.65 22.31 0.22 -2.28 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 32 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 36 H 0.01 0.69 7.57 -2.38 -0.02 0.67 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.15 1.58 7.78 -2.91 -0.02 1.56 16 39 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.14 2.09 8.04 -2.91 -0.02 2.06 16 Total: -1.00 -71.28 353.28 7.34 -63.94 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.95 Total: 6.38 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.57 Total: -31.73 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.30 Total: -59.88 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.14 Total: -23.89 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -71.28 7.34 -63.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.716 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds