Wall clock time and date at job start Tue Mar 31 2020 07:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47700 * 2 1 4 4 O 1.45206 * 109.47340 * 239.99893 * 2 1 3 5 5 C 1.34236 * 116.99698 * 89.99840 * 4 2 1 6 6 O 1.20826 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99529 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.46670 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46586 * 179.97438 * 8 7 5 10 10 C 1.53008 * 109.46607 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46617 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00467 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99608 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99876 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99865 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47374 * 89.99709 * 15 13 11 17 17 H 1.48504 * 109.46802 * 209.99634 * 15 13 11 18 18 H 1.48494 * 109.47268 * 329.99336 * 15 13 11 19 19 C 1.50699 * 109.47366 * 120.00273 * 2 1 3 20 20 C 1.38265 * 119.99210 * 84.97593 * 19 2 1 21 21 C 1.38223 * 120.05406 * 179.97438 * 20 19 2 22 22 C 1.38223 * 120.02411 * 0.02562 * 21 20 19 23 23 C 1.38437 * 119.97448 * 359.74760 * 22 21 20 24 24 F 1.35099 * 120.02356 * 180.27548 * 23 22 21 25 25 C 1.38183 * 119.98467 * 265.00326 * 19 2 1 26 26 H 1.09003 * 109.47032 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46816 * 300.00057 * 1 2 3 28 28 H 1.08998 * 109.47032 * 59.99881 * 1 2 3 29 29 H 1.09002 * 109.46934 * 299.99360 * 7 5 4 30 30 H 1.08991 * 109.47499 * 59.99718 * 7 5 4 31 31 H 1.09002 * 109.46661 * 299.99210 * 8 7 5 32 32 H 1.08996 * 109.47204 * 59.99414 * 8 7 5 33 33 H 1.08994 * 109.47176 * 299.99577 * 9 8 7 34 34 H 1.09002 * 109.47036 * 60.00139 * 9 8 7 35 35 H 1.09002 * 109.47102 * 299.99952 * 10 9 8 36 36 H 1.08996 * 109.46742 * 60.00143 * 10 9 8 37 37 H 0.96998 * 119.99673 * 179.97438 * 14 13 11 38 38 H 1.08004 * 119.96758 * 359.97438 * 20 19 2 39 39 H 1.08000 * 119.98736 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.01045 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.01017 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2812 6 8 1.9982 1.2519 -2.2504 7 6 2.7183 -0.5772 -3.5495 8 6 2.8636 0.4891 -4.6371 9 6 3.3730 -0.1619 -5.9246 10 6 3.5177 0.9044 -7.0124 11 6 4.0200 0.2633 -8.2804 12 1 4.2161 -0.7984 -8.3078 13 6 4.2284 1.0321 -9.4059 14 7 4.6673 0.4727 -10.5123 15 14 3.8886 2.8684 -9.3586 16 1 5.1185 3.5888 -8.9420 17 1 3.4776 3.3305 -10.7087 18 1 2.7997 3.1455 -8.3878 19 6 2.0324 -0.7104 1.2304 20 6 2.1639 -2.0868 1.2285 21 6 2.6251 -2.7397 2.3561 22 6 2.9548 -2.0172 3.4874 23 6 2.8280 -0.6386 3.4889 24 9 3.1553 0.0691 4.5922 25 6 2.3609 0.0139 2.3604 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.6873 -1.0408 -3.3640 30 1 2.0089 -1.3370 -3.8774 31 1 1.8948 0.9530 -4.8228 32 1 3.5732 1.2485 -4.3089 33 1 4.3418 -0.6255 -5.7387 34 1 2.6636 -0.9215 -6.2530 35 1 2.5487 1.3677 -7.1983 36 1 4.2268 1.6642 -6.6842 37 1 4.8135 1.0136 -11.3041 38 1 1.9061 -2.6522 0.3451 39 1 2.7278 -3.8148 2.3533 40 1 3.3156 -2.5275 4.3682 41 1 2.2580 1.0890 2.3616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:06 Heat of formation + Delta-G solvation = -150.617682 kcal Electronic energy + Delta-G solvation = -22151.234090 eV Core-core repulsion = 18523.056411 eV Total energy + Delta-G solvation = -3628.177679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.94996 -41.77058 -40.11809 -37.88915 -36.64810 -34.66790 -34.13027 -31.99767 -31.57831 -30.35055 -27.98897 -25.50933 -24.19537 -23.76808 -22.36140 -21.72558 -21.29696 -18.95216 -18.74236 -18.57170 -17.49961 -17.18688 -17.12841 -16.92164 -16.65035 -16.30025 -16.11591 -15.41503 -14.87107 -14.78391 -14.66182 -14.42237 -14.02993 -13.93846 -13.78068 -13.51009 -13.34158 -13.10538 -12.88135 -12.70433 -12.64461 -12.36029 -12.12086 -11.93931 -11.77113 -11.74029 -11.65931 -11.36231 -11.31345 -11.22194 -10.74971 -10.04335 -9.72389 -8.28506 -6.31547 0.05747 0.15790 1.18500 1.35917 1.37365 1.49763 1.58555 2.36726 2.54693 3.07006 3.12229 3.47303 3.67818 3.76578 3.94080 4.01904 4.02388 4.06716 4.11516 4.21578 4.37519 4.47167 4.62128 4.62959 4.70409 4.75890 4.81504 4.84789 5.02623 5.08288 5.09909 5.11227 5.18090 5.21560 5.31592 5.33422 5.53184 5.61160 5.66118 5.69653 5.85875 6.30732 6.72624 6.76989 7.33172 8.88031 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.032708 B = 0.002220 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.847049 B =12611.435329 C =12800.154296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.083 0.917 4 O -0.346 6.346 5 C 0.467 3.533 6 O -0.539 6.539 7 C -0.105 4.105 8 C -0.102 4.102 9 C -0.094 4.094 10 C -0.018 4.018 11 C -0.530 4.530 12 H 0.037 0.963 13 C 0.002 3.998 14 N -0.951 5.951 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.250 1.250 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.086 4.086 22 C -0.149 4.149 23 C 0.079 3.921 24 F -0.148 7.148 25 C -0.151 4.151 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.265 0.735 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.156 0.844 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 -6.157 31.426 32.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 H 0.101 0.899 4 O -0.263 6.263 5 C 0.312 3.688 6 O -0.428 6.428 7 C -0.142 4.142 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.055 4.055 11 C -0.568 4.568 12 H 0.055 0.945 13 C -0.195 4.195 14 N -0.592 5.592 15 Si 0.772 3.228 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.173 1.173 19 C -0.071 4.071 20 C -0.125 4.125 21 C -0.103 4.103 22 C -0.168 4.168 23 C 0.060 3.940 24 F -0.127 7.127 25 C -0.170 4.170 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.164 0.836 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.906 -5.738 31.351 32.838 hybrid contribution 0.159 1.235 -0.326 1.287 sum -7.748 -4.503 31.025 32.293 Atomic orbital electron populations 1.22163 0.91725 1.04211 1.03569 1.21474 0.95690 0.95805 0.80221 0.89916 1.86554 1.77026 1.42401 1.20328 1.24299 0.73140 0.85646 0.85736 1.90658 1.49348 1.18226 1.84572 1.21510 1.05431 0.99919 0.87384 1.21393 1.01732 0.97303 0.93557 1.21328 1.00778 0.97988 0.93086 1.19582 0.96043 0.96038 0.93834 1.21553 1.43432 0.95534 0.96260 0.94452 1.26018 0.94533 1.03930 0.94999 1.70066 1.48111 1.38169 1.02855 0.85686 0.79804 0.79567 0.77768 1.19324 1.20921 1.17344 1.19400 0.99967 0.94693 0.93003 1.21353 0.98286 0.93243 0.99609 1.21405 0.96041 1.01864 0.91039 1.21528 1.02222 0.91551 1.01469 1.17809 1.02075 0.90661 0.83487 1.91488 1.90539 1.79039 1.51649 1.20994 1.02163 1.01419 0.92447 0.90101 0.89197 0.92388 0.85601 0.85283 0.92220 0.92373 0.92252 0.92129 0.96570 0.96791 0.92568 0.83564 0.81704 0.82668 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.53 71.98 0.69 -1.72 16 2 C 0.12 2.24 2.77 29.85 0.08 2.33 16 3 H 0.08 1.74 7.06 -2.39 -0.02 1.72 16 4 O -0.35 -7.04 9.03 -51.47 -0.46 -7.51 16 5 C 0.47 11.33 7.93 71.24 0.56 11.89 16 6 O -0.54 -16.60 15.20 21.96 0.33 -16.27 16 7 C -0.11 -2.27 5.81 29.85 0.17 -2.10 16 8 C -0.10 -3.03 4.50 30.60 0.14 -2.90 16 9 C -0.09 -3.43 5.15 30.60 0.16 -3.27 16 10 C -0.02 -0.83 4.04 29.85 0.12 -0.70 16 11 C -0.53 -30.68 9.66 25.60 0.25 -30.43 16 12 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 13 C 0.00 0.10 5.47 84.66 0.46 0.57 16 14 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 15 Si 0.95 45.26 27.47 68.60 1.88 47.14 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 19 C -0.07 -1.13 5.01 -19.87 -0.10 -1.23 16 20 C -0.11 -1.40 9.35 22.27 0.21 -1.20 16 21 C -0.09 -0.87 10.04 22.26 0.22 -0.64 16 22 C -0.15 -1.79 10.03 22.31 0.22 -1.57 16 23 C 0.08 1.28 7.30 22.38 0.16 1.44 16 24 F -0.15 -2.75 17.27 44.97 0.78 -1.97 16 25 C -0.15 -2.47 9.66 22.31 0.22 -2.25 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.13 2.22 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 32 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 36 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.15 1.64 7.63 -2.91 -0.02 1.62 16 39 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -71.14 353.07 7.35 -63.79 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.95 Total: 6.44 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 3.57 Total: -31.78 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.30 Total: -59.85 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.13 Total: -23.77 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -71.14 7.35 -63.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.828 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds