Wall clock time and date at job start Tue Mar 31 2020 07:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 O 1.45201 * 109.47379 * 120.00335 * 2 1 3 5 5 C 1.34222 * 117.00137 * 269.99835 * 4 2 1 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 2 8 8 C 1.52996 * 109.47298 * 180.27351 * 7 5 4 9 9 C 1.50701 * 109.46972 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00292 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00289 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00193 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99560 * 0.02562 * 11 9 8 14 14 H 1.48511 * 109.47049 * 90.00369 * 13 11 9 15 15 H 1.48494 * 109.47227 * 209.99778 * 13 11 9 16 16 H 1.48494 * 109.47357 * 330.00296 * 13 11 9 17 17 C 1.50706 * 109.47003 * 240.00316 * 2 1 3 18 18 O 1.21283 * 119.99896 * 245.00439 * 17 2 1 19 19 N 1.34771 * 120.00153 * 64.99551 * 17 2 1 20 20 C 1.46500 * 120.00463 * 180.02562 * 19 17 2 21 21 C 1.47198 * 112.84585 * 50.33439 * 20 19 17 22 22 N 5.02597 * 91.34743 * 227.18783 * 2 1 3 23 23 C 1.53789 * 113.61239 * 279.14358 * 20 19 17 24 24 C 1.53957 * 87.01544 * 220.04314 * 23 20 19 25 25 C 1.53778 * 113.61967 * 181.53360 * 20 19 17 26 26 H 1.08999 * 109.47253 * 59.99790 * 1 2 3 27 27 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46742 * 299.99523 * 1 2 3 29 29 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 30 30 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 31 31 H 1.08994 * 109.47515 * 300.00215 * 8 7 5 32 32 H 1.09006 * 109.46938 * 60.00806 * 8 7 5 33 33 H 0.97008 * 120.00190 * 180.02562 * 12 11 9 34 34 H 0.97001 * 120.00231 * 0.02562 * 19 17 2 35 35 H 1.08998 * 113.61251 * 334.56020 * 23 20 19 36 36 H 1.09003 * 113.61000 * 105.46630 * 23 20 19 37 37 H 1.08999 * 113.53677 * 270.81342 * 24 23 20 38 38 H 1.08998 * 113.74285 * 139.94495 * 24 23 20 39 39 H 1.08996 * 113.61446 * 254.53472 * 25 20 19 40 40 H 1.09004 * 113.61243 * 25.34797 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2173 0.0638 2.2810 6 8 1.9975 1.2516 2.2506 7 6 2.7129 -0.5783 3.5510 8 6 2.8524 0.4868 4.6404 9 6 3.3475 -0.1555 5.9106 10 1 3.5435 -1.2172 5.9380 11 6 3.5502 0.6122 7.0378 12 7 3.9827 0.0517 8.1461 13 14 3.2105 2.4484 6.9907 14 1 1.7985 2.7006 7.3756 15 1 4.1145 3.1436 7.9417 16 1 3.4481 2.9607 5.6173 17 6 2.0323 -0.7104 -1.2306 18 8 2.6529 -1.7467 -1.1216 19 7 1.7918 -0.1942 -2.4520 20 6 2.2796 -0.8850 -3.6483 21 6 1.9224 -2.3128 -3.6694 22 7 1.6482 -3.4147 -3.6860 23 6 3.7630 -0.6165 -3.9529 24 6 3.3624 -0.5469 -5.4378 25 6 1.9560 -0.1495 -4.9595 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0023 -1.3387 3.8750 30 1 3.6829 -1.0414 3.3693 31 1 3.5630 1.2471 4.3164 32 1 1.8824 0.9499 4.8221 33 1 4.1250 0.5917 8.9392 34 1 1.2957 0.6348 -2.5392 35 1 4.1262 0.3305 -3.5538 36 1 4.4164 -1.4559 -3.7148 37 1 3.3951 -1.5122 -5.9431 38 1 3.8730 0.2394 -5.9937 39 1 1.1527 -0.6123 -5.5328 40 1 1.8228 0.9253 -4.8359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:08 Heat of formation + Delta-G solvation = -74.890358 kcal Electronic energy + Delta-G solvation = -23018.962999 eV Core-core repulsion = 19413.989065 eV Total energy + Delta-G solvation = -3604.973934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19415 -40.27605 -38.73301 -36.33734 -36.13960 -34.21773 -33.65123 -32.01237 -31.23453 -26.80759 -26.63255 -26.47357 -24.58053 -22.25722 -21.77189 -20.56519 -19.87047 -18.40958 -17.89860 -17.43946 -16.70835 -16.51395 -16.12326 -15.62126 -15.28458 -15.11021 -14.34843 -14.19672 -14.06505 -13.72091 -13.31972 -13.25561 -13.11920 -13.01942 -12.71183 -12.63460 -12.42874 -12.26618 -12.04577 -11.77974 -11.48622 -11.43883 -11.19210 -11.04491 -10.82032 -10.35408 -10.20419 -10.08305 -9.90524 -9.78037 -9.73385 -9.26956 -8.56695 -6.07642 -4.07723 1.86088 2.15615 2.32731 2.57457 2.62689 3.17921 3.32521 3.32866 3.39895 3.47984 3.77005 3.90642 4.15138 4.27347 4.44910 4.57227 4.60720 4.74095 4.98578 4.99730 5.04447 5.22886 5.26718 5.30946 5.39392 5.43866 5.45042 5.56521 5.79009 5.82480 5.98365 6.00483 6.39877 6.67470 6.86417 7.20447 7.20807 7.28674 7.69069 7.72815 8.09289 8.46276 8.95115 9.53618 11.04981 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.002773 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.328202 B =10094.699445 C =10241.652361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 H 0.113 0.887 4 O -0.334 6.334 5 C 0.460 3.540 6 O -0.510 6.510 7 C -0.095 4.095 8 C -0.001 4.001 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.517 3.483 18 O -0.497 6.497 19 N -0.715 5.715 20 C 0.244 3.756 21 C 0.220 3.780 22 N -0.399 5.399 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.123 4.123 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.026 0.974 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.412 0.588 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 4.206 -29.498 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.130 0.870 4 O -0.251 6.251 5 C 0.305 3.695 6 O -0.397 6.397 7 C -0.132 4.132 8 C -0.038 4.038 9 C -0.565 4.565 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.538 5.538 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C 0.303 3.697 18 O -0.369 6.369 19 N -0.372 5.372 20 C 0.154 3.846 21 C -0.100 4.100 22 N -0.075 5.075 23 C -0.171 4.171 24 C -0.178 4.178 25 C -0.162 4.162 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.249 0.751 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.602 2.159 -29.231 29.841 hybrid contribution -0.395 1.827 0.196 1.879 sum -5.997 3.986 -29.035 29.914 Atomic orbital electron populations 1.22158 0.91891 1.04047 1.04153 1.22274 0.95928 0.97746 0.83152 0.86980 1.86749 1.77266 1.41797 1.19250 1.24933 0.73289 0.86282 0.85045 1.90606 1.48241 1.16936 1.83939 1.21582 1.02821 1.01432 0.87404 1.19487 0.97760 0.93823 0.92762 1.21031 1.45075 0.96925 0.93504 0.90606 1.24961 0.94325 0.98629 0.95224 1.69904 1.45993 1.36229 1.01688 0.86794 0.78436 0.85749 0.78543 1.20174 1.21325 1.18603 1.20492 0.79565 0.85514 0.84176 1.90799 1.37750 1.22348 1.85954 1.45881 1.59756 1.27743 1.03812 1.18617 0.97498 0.82018 0.86447 1.28123 0.93997 0.93967 0.93916 1.81184 1.07486 1.11818 1.06991 1.23467 0.93367 1.04335 0.95896 1.22849 0.95567 1.03072 0.96332 1.23320 0.99370 1.01385 0.92140 0.90411 0.90909 0.90083 0.88106 0.88044 0.95572 0.96023 0.92583 0.75065 0.87491 0.89752 0.89456 0.89345 0.89566 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.50 37.16 0.35 -1.21 16 2 C 0.07 0.82 2.97 -27.88 -0.08 0.74 16 3 H 0.11 1.24 7.16 -51.93 -0.37 0.87 16 4 O -0.33 -5.49 9.42 -45.87 -0.43 -5.92 16 5 C 0.46 8.43 7.93 36.00 0.29 8.72 16 6 O -0.51 -10.11 15.20 -18.76 -0.29 -10.40 16 7 C -0.09 -1.87 5.75 -27.89 -0.16 -2.03 16 8 C 0.00 -0.02 3.33 -27.88 -0.09 -0.11 16 9 C -0.53 -14.88 9.66 -34.44 -0.33 -15.22 16 10 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 13 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 17 C 0.52 6.07 6.93 -10.99 -0.08 6.00 16 18 O -0.50 -8.13 15.27 -14.05 -0.21 -8.35 16 19 N -0.71 -4.95 5.27 -49.45 -0.26 -5.21 16 20 C 0.24 1.68 1.18 -133.79 -0.16 1.53 16 21 C 0.22 2.44 12.64 -20.77 -0.26 2.18 16 22 N -0.40 -5.61 18.54 42.14 0.78 -4.83 16 23 C -0.13 -0.76 7.45 -25.82 -0.19 -0.95 16 24 C -0.14 -0.48 7.80 -25.83 -0.20 -0.68 16 25 C -0.12 -0.35 7.34 -25.92 -0.19 -0.54 16 26 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 30 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 31 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 32 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.41 1.26 8.42 -40.82 -0.34 0.92 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.09 0.35 8.13 -51.93 -0.42 -0.07 16 38 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.09 0.23 8.08 -51.93 -0.42 -0.19 16 40 H 0.11 0.04 8.13 -51.93 -0.42 -0.38 16 LS Contribution 349.61 15.07 5.27 5.27 Total: -1.00 -37.40 349.61 -5.94 -43.34 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -5.70 Total: -4.70 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.21 Total: 0.38 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 1.29 Total: -36.88 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.93 Total: -24.67 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.40 -5.94 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.546 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds