Wall clock time and date at job start Tue Mar 31 2020 07:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 O 1.45201 * 109.47379 * 120.00335 * 2 1 3 5 5 C 1.34222 * 117.00137 * 269.99835 * 4 2 1 6 6 O 1.20833 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00432 * 179.71953 * 5 4 2 8 8 C 1.52996 * 109.47298 * 180.27351 * 7 5 4 9 9 C 1.50701 * 109.46972 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00292 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00289 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00193 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99560 * 0.02562 * 11 9 8 14 14 H 1.48511 * 109.47049 * 90.00369 * 13 11 9 15 15 H 1.48494 * 109.47227 * 209.99778 * 13 11 9 16 16 H 1.48494 * 109.47357 * 330.00296 * 13 11 9 17 17 C 1.50706 * 109.47003 * 240.00316 * 2 1 3 18 18 O 1.21283 * 119.99896 * 245.00439 * 17 2 1 19 19 N 1.34771 * 120.00153 * 64.99551 * 17 2 1 20 20 C 1.46500 * 120.00463 * 180.02562 * 19 17 2 21 21 C 1.47198 * 112.84585 * 50.33439 * 20 19 17 22 22 N 5.02597 * 91.34743 * 227.18783 * 2 1 3 23 23 C 1.53789 * 113.61239 * 279.14358 * 20 19 17 24 24 C 1.53957 * 87.01544 * 220.04314 * 23 20 19 25 25 C 1.53778 * 113.61967 * 181.53360 * 20 19 17 26 26 H 1.08999 * 109.47253 * 59.99790 * 1 2 3 27 27 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46742 * 299.99523 * 1 2 3 29 29 H 1.09000 * 109.47190 * 300.28287 * 7 5 4 30 30 H 1.09006 * 109.46468 * 60.27870 * 7 5 4 31 31 H 1.08994 * 109.47515 * 300.00215 * 8 7 5 32 32 H 1.09006 * 109.46938 * 60.00806 * 8 7 5 33 33 H 0.97008 * 120.00190 * 180.02562 * 12 11 9 34 34 H 0.97001 * 120.00231 * 0.02562 * 19 17 2 35 35 H 1.08998 * 113.61251 * 334.56020 * 23 20 19 36 36 H 1.09003 * 113.61000 * 105.46630 * 23 20 19 37 37 H 1.08999 * 113.53677 * 270.81342 * 24 23 20 38 38 H 1.08998 * 113.74285 * 139.94495 * 24 23 20 39 39 H 1.08996 * 113.61446 * 254.53472 * 25 20 19 40 40 H 1.09004 * 113.61243 * 25.34797 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2173 0.0638 2.2810 6 8 1.9975 1.2516 2.2506 7 6 2.7129 -0.5783 3.5510 8 6 2.8524 0.4868 4.6404 9 6 3.3475 -0.1555 5.9106 10 1 3.5435 -1.2172 5.9380 11 6 3.5502 0.6122 7.0378 12 7 3.9827 0.0517 8.1461 13 14 3.2105 2.4484 6.9907 14 1 1.7985 2.7006 7.3756 15 1 4.1145 3.1436 7.9417 16 1 3.4481 2.9607 5.6173 17 6 2.0323 -0.7104 -1.2306 18 8 2.6529 -1.7467 -1.1216 19 7 1.7918 -0.1942 -2.4520 20 6 2.2796 -0.8850 -3.6483 21 6 1.9224 -2.3128 -3.6694 22 7 1.6482 -3.4147 -3.6860 23 6 3.7630 -0.6165 -3.9529 24 6 3.3624 -0.5469 -5.4378 25 6 1.9560 -0.1495 -4.9595 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0023 -1.3387 3.8750 30 1 3.6829 -1.0414 3.3693 31 1 3.5630 1.2471 4.3164 32 1 1.8824 0.9499 4.8221 33 1 4.1250 0.5917 8.9392 34 1 1.2957 0.6348 -2.5392 35 1 4.1262 0.3305 -3.5538 36 1 4.4164 -1.4559 -3.7148 37 1 3.3951 -1.5122 -5.9431 38 1 3.8730 0.2394 -5.9937 39 1 1.1527 -0.6123 -5.5328 40 1 1.8228 0.9253 -4.8359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:07 Heat of formation + Delta-G solvation = -100.719960 kcal Electronic energy + Delta-G solvation = -23020.083055 eV Core-core repulsion = 19413.989065 eV Total energy + Delta-G solvation = -3606.093990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.08679 -41.36329 -39.60075 -37.65549 -37.03602 -35.64175 -35.01919 -33.54595 -32.59474 -28.48079 -27.41790 -26.81356 -25.57539 -23.75034 -22.54262 -21.57517 -21.21543 -19.48342 -19.19999 -18.47075 -18.30932 -17.42216 -17.09706 -16.82747 -16.29956 -16.13783 -15.77542 -15.37061 -15.07962 -14.92051 -14.79019 -14.35268 -14.14568 -14.03073 -13.82743 -13.46990 -13.36485 -13.32831 -12.94425 -12.91284 -12.73288 -12.48642 -12.27448 -12.03615 -11.94540 -11.79004 -11.73115 -11.62699 -11.52163 -11.41897 -10.90371 -10.78420 -10.47681 -8.31071 -6.36424 0.99230 1.13684 1.26773 1.36821 1.38481 1.52301 1.53741 1.60265 2.29531 2.35961 2.62251 3.04149 3.34282 3.42916 3.51578 3.69501 3.80237 3.85614 3.87366 4.25639 4.28287 4.35230 4.56108 4.61146 4.74050 4.78233 4.82461 4.91330 4.99492 5.03283 5.05760 5.15199 5.20825 5.29994 5.35940 5.40748 5.58037 6.20403 6.22205 6.39677 6.65974 6.74663 6.96344 7.28654 8.84779 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.002773 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.328202 B =10094.699445 C =10241.652361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.059 3.941 3 H 0.129 0.871 4 O -0.346 6.346 5 C 0.474 3.526 6 O -0.525 6.525 7 C -0.095 4.095 8 C 0.006 3.994 9 C -0.536 4.536 10 H 0.045 0.955 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.945 3.055 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.252 1.252 17 C 0.519 3.481 18 O -0.553 6.553 19 N -0.687 5.687 20 C 0.224 3.776 21 C 0.238 3.762 22 N -0.464 5.464 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.101 4.101 26 H 0.123 0.877 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.268 0.732 34 H 0.435 0.565 35 H 0.125 0.875 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 7.384 -32.161 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 H 0.146 0.854 4 O -0.262 6.262 5 C 0.318 3.682 6 O -0.414 6.414 7 C -0.132 4.132 8 C -0.032 4.032 9 C -0.573 4.573 10 H 0.063 0.937 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.769 3.231 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.176 1.176 17 C 0.305 3.695 18 O -0.429 6.429 19 N -0.345 5.345 20 C 0.134 3.866 21 C -0.081 4.081 22 N -0.140 5.140 23 C -0.175 4.175 24 C -0.171 4.171 25 C -0.139 4.139 26 H 0.141 0.859 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.277 0.723 35 H 0.143 0.857 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.765 5.365 -31.954 33.100 hybrid contribution -0.018 0.757 0.945 1.211 sum -6.783 6.122 -31.008 32.327 Atomic orbital electron populations 1.22205 0.89686 1.03943 1.05976 1.22740 0.97664 0.98028 0.81463 0.85392 1.86681 1.77187 1.42244 1.20119 1.24260 0.72983 0.85725 0.85190 1.90589 1.49101 1.17356 1.84396 1.21353 1.03768 1.00423 0.87674 1.19308 0.97134 0.94524 0.92223 1.21349 1.44644 0.95879 0.95472 0.93674 1.25890 0.94193 1.03788 0.94806 1.70039 1.47567 1.38283 1.02618 0.85730 0.78787 0.79602 0.79029 1.19057 1.20604 1.17602 1.20524 0.78890 0.84756 0.85349 1.90793 1.40493 1.24772 1.86809 1.45663 1.58567 1.27940 1.02296 1.19276 0.98960 0.80288 0.88027 1.29017 0.92221 0.94883 0.92008 1.81178 1.09798 1.13918 1.09140 1.23573 0.91840 1.04042 0.98027 1.22843 0.96122 1.03511 0.94654 1.23430 0.99062 1.02975 0.88436 0.85869 0.91964 0.90963 0.87192 0.87544 0.95990 0.95964 0.92283 0.72331 0.85708 0.92567 0.90608 0.86785 0.88868 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.50 71.98 0.68 -1.95 16 2 C 0.06 1.31 2.97 29.85 0.09 1.40 16 3 H 0.13 2.46 7.16 -2.39 -0.02 2.44 16 4 O -0.35 -11.12 9.42 -45.00 -0.42 -11.54 16 5 C 0.47 16.88 7.93 71.23 0.56 17.44 16 6 O -0.53 -19.91 15.20 21.94 0.33 -19.57 16 7 C -0.09 -3.72 5.75 29.85 0.17 -3.55 16 8 C 0.01 0.27 3.33 29.85 0.10 0.37 16 9 C -0.54 -30.71 9.66 25.60 0.25 -30.47 16 10 H 0.04 2.78 7.99 -2.91 -0.02 2.76 16 11 C 0.01 0.64 5.47 84.66 0.46 1.10 16 12 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 13 Si 0.95 44.91 27.47 68.60 1.88 46.80 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 17 C 0.52 11.41 6.93 87.66 0.61 12.02 16 18 O -0.55 -18.23 15.27 15.71 0.24 -17.99 16 19 N -0.69 -7.44 5.27 -428.77 -2.26 -9.70 16 20 C 0.22 2.59 1.18 2.33 0.00 2.59 16 21 C 0.24 5.23 12.64 89.45 1.13 6.36 16 22 N -0.46 -13.50 18.54 20.00 0.37 -13.13 16 23 C -0.14 -1.31 7.45 31.18 0.23 -1.08 16 24 C -0.13 -0.50 7.80 31.18 0.24 -0.25 16 25 C -0.10 -0.14 7.34 31.12 0.23 0.09 16 26 H 0.12 0.84 7.92 -2.39 -0.02 0.82 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 4.07 8.14 -2.39 -0.02 4.06 16 30 H 0.11 4.04 8.14 -2.38 -0.02 4.02 16 31 H 0.02 1.06 7.16 -2.39 -0.02 1.04 16 32 H 0.02 1.05 7.53 -2.38 -0.02 1.04 16 33 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 34 H 0.43 0.58 8.42 -92.71 -0.78 -0.20 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 37 H 0.08 0.48 8.13 -2.39 -0.02 0.46 16 38 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.09 0.11 8.08 -2.39 -0.02 0.09 16 40 H 0.15 -0.85 8.13 -2.39 -0.02 -0.87 16 Total: -1.00 -85.26 349.61 5.43 -79.82 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 0.23 Total: -0.03 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.76 Total: 4.08 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.59 Total: -81.57 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: 0.15 Total: -49.10 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Total: -85.26 5.43 -79.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.897 kcal (2) G-P(sol) polarization free energy of solvation -85.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds