Wall clock time and date at job start Tue Mar 31 2020 07:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47193 * 109.47164 * 2 1 4 4 N 2.60799 * 109.47162 * 0.02562 * 2 1 3 5 5 N 1.46497 * 109.46907 * 120.00100 * 2 1 3 6 6 C 1.34768 * 120.00280 * 300.00001 * 5 2 1 7 7 O 1.21282 * 120.00211 * 359.97438 * 6 5 2 8 8 C 1.50705 * 120.00359 * 180.02562 * 6 5 2 9 9 O 1.45199 * 109.47328 * 180.02562 * 8 6 5 10 10 C 1.34225 * 116.99807 * 180.02562 * 9 8 6 11 11 O 1.20824 * 120.00143 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99835 * 179.97438 * 10 9 8 13 13 C 1.53000 * 109.47329 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47329 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99792 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99977 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99977 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99934 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46889 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46834 * 120.00039 * 18 16 14 21 21 H 1.48502 * 109.46784 * 239.99900 * 18 16 14 22 22 C 1.53003 * 109.46978 * 240.00133 * 2 1 3 23 23 C 1.53001 * 117.51964 * 356.28481 * 22 2 1 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 2 25 25 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47562 * 299.99765 * 1 2 3 27 27 H 1.09004 * 109.47159 * 59.99917 * 1 2 3 28 28 H 0.97003 * 119.99690 * 119.99861 * 5 2 1 29 29 H 1.08998 * 109.46809 * 299.99720 * 8 6 5 30 30 H 1.08992 * 109.47022 * 59.99631 * 8 6 5 31 31 H 1.09001 * 109.47278 * 300.00074 * 12 10 9 32 32 H 1.09004 * 109.47026 * 59.99899 * 12 10 9 33 33 H 1.08999 * 109.46941 * 299.99983 * 13 12 10 34 34 H 1.09004 * 109.46879 * 60.00139 * 13 12 10 35 35 H 0.97004 * 119.99575 * 179.97438 * 17 16 14 36 36 H 1.09002 * 115.54973 * 210.58264 * 22 2 1 37 37 H 1.09001 * 117.49733 * 214.97413 * 23 22 2 38 38 H 1.08995 * 117.49577 * 359.97438 * 23 22 2 39 39 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 40 40 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3877 0.0000 4 7 2.3993 2.4588 0.0011 5 7 2.0183 -0.6906 1.1961 6 6 1.6927 -0.2303 2.4202 7 8 0.9958 0.7561 2.5316 8 6 2.1955 -0.9404 3.6507 9 8 1.7109 -0.2563 4.8363 10 6 2.0723 -0.7659 6.0243 11 8 2.7700 -1.7512 6.0720 12 6 1.6077 -0.1092 7.2986 13 6 2.1551 -0.8825 8.4999 14 6 1.6911 -0.2254 9.7742 15 1 1.0677 0.6555 9.7316 16 6 2.0624 -0.7488 10.9946 17 7 2.8220 -1.8212 11.0465 18 14 1.4866 0.0654 12.5742 19 1 0.6490 1.2467 12.2454 20 1 0.6868 -0.9027 13.3669 21 1 2.6658 0.4989 13.3659 22 6 2.0400 -0.7212 -1.2493 23 6 0.9990 -1.3563 -2.1734 24 6 1.7329 -0.0857 -2.6068 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.5759 -1.4793 1.1071 29 1 1.8325 -1.9681 3.6508 30 1 3.2854 -0.9400 3.6505 31 1 1.9708 0.9181 7.3313 32 1 0.5182 -0.1107 7.3318 33 1 1.7916 -1.9096 8.4671 34 1 3.2447 -0.8814 8.4669 35 1 3.0835 -2.1891 11.9051 36 1 2.9949 -1.2351 -1.1386 37 1 1.2690 -2.2879 -2.6706 38 1 -0.0495 -1.2607 -1.8912 39 1 1.1673 0.8461 -2.6098 40 1 2.4859 -0.1814 -3.3891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:22 Heat of formation + Delta-G solvation = -68.510987 kcal Electronic energy + Delta-G solvation = -22549.132783 eV Core-core repulsion = 18944.435479 eV Total energy + Delta-G solvation = -3604.697304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97490 -40.01041 -38.60047 -36.34989 -36.09741 -34.78765 -33.60810 -31.47363 -31.05768 -28.56303 -26.23214 -25.60745 -23.17816 -22.30772 -21.81417 -20.84007 -19.92030 -18.38636 -17.87401 -17.38967 -16.70854 -16.64332 -16.31238 -15.58344 -15.19320 -14.97639 -14.69233 -14.46047 -13.93584 -13.79252 -13.48872 -13.35771 -12.90761 -12.68337 -12.46899 -12.42575 -12.26491 -12.23742 -11.79075 -11.72817 -11.23343 -11.12954 -10.98167 -10.96818 -10.63291 -10.62068 -10.12870 -10.07011 -9.98664 -9.86050 -9.59524 -9.17643 -8.38928 -6.02771 -4.07317 1.85788 2.15264 2.44257 2.67206 2.71674 2.97299 3.30398 3.30969 3.38655 3.43014 3.65534 3.93250 4.19614 4.23774 4.34806 4.44018 4.44365 4.75171 4.94924 4.95102 5.04157 5.11859 5.22361 5.29391 5.33019 5.37835 5.43266 5.52150 5.76373 5.84088 6.11020 6.18259 6.51330 6.83387 6.90144 7.24249 7.65076 7.70877 7.73430 7.96413 8.17596 8.35518 8.99843 9.56959 11.08275 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.042242 B = 0.002325 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.682781 B =12041.145365 C =12311.687549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.315 3.685 3 C 0.202 3.798 4 N -0.406 5.406 5 N -0.720 5.720 6 C 0.518 3.482 7 O -0.499 6.499 8 C 0.047 3.953 9 O -0.342 6.342 10 C 0.460 3.540 11 O -0.505 6.505 12 C -0.102 4.102 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.169 4.169 23 C -0.164 4.164 24 C -0.167 4.167 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.413 0.587 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 -2.255 -28.970 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.226 3.774 3 C -0.118 4.118 4 N -0.082 5.082 5 N -0.378 5.378 6 C 0.304 3.696 7 O -0.371 6.371 8 C -0.031 4.031 9 O -0.259 6.259 10 C 0.303 3.697 11 O -0.391 6.391 12 C -0.139 4.139 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.189 4.189 23 C -0.201 4.201 24 C -0.204 4.204 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.249 0.751 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.893 -0.330 -28.721 28.868 hybrid contribution 0.162 -0.574 0.819 1.013 sum -2.731 -0.904 -27.902 28.050 Atomic orbital electron populations 1.22414 0.90870 1.04426 1.05033 1.16894 0.94967 0.80627 0.84931 1.29128 0.93933 0.94893 0.93889 1.81172 1.07952 1.12052 1.06978 1.45922 1.55519 1.32547 1.03790 1.20398 0.80401 0.84740 0.84077 1.90768 1.35436 1.24783 1.86135 1.22475 1.00910 0.96772 0.82946 1.86671 1.70002 1.55291 1.13930 1.24962 0.77133 0.82843 0.84720 1.90640 1.35433 1.25737 1.87281 1.21809 1.02923 1.01467 0.87744 1.19041 0.97178 0.95423 0.88772 1.21196 1.32117 1.12661 0.90592 0.92180 1.25023 0.95043 0.94981 0.99322 1.70004 1.35806 1.21671 1.25362 0.86477 0.78517 0.79419 0.83236 1.19616 1.20960 1.20967 1.22356 1.01879 1.05212 0.89435 1.23272 0.98135 0.97414 1.01263 1.23044 1.03697 0.97875 0.95810 0.89674 0.89093 0.90614 0.75073 0.87903 0.88169 0.88700 0.88656 0.95512 0.95546 0.92903 0.85764 0.87779 0.87196 0.88328 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 6.93 37.16 0.26 -0.87 16 2 C 0.32 2.26 0.87 -134.61 -0.12 2.15 16 3 C 0.20 2.27 12.16 -20.76 -0.25 2.02 16 4 N -0.41 -5.78 18.54 42.16 0.78 -5.00 16 5 N -0.72 -5.09 5.08 -50.23 -0.26 -5.34 16 6 C 0.52 5.91 7.32 -10.99 -0.08 5.83 16 7 O -0.50 -7.78 13.71 -14.11 -0.19 -7.97 16 8 C 0.05 0.56 5.94 36.01 0.21 0.77 16 9 O -0.34 -5.74 9.75 -45.89 -0.45 -6.19 16 10 C 0.46 8.87 7.96 36.01 0.29 9.15 16 11 O -0.50 -10.83 15.73 -18.75 -0.29 -11.12 16 12 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 13 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 14 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.17 -0.69 5.32 -90.61 -0.48 -1.17 16 23 C -0.16 -0.44 9.50 -26.73 -0.25 -0.70 16 24 C -0.17 -0.66 9.47 -26.73 -0.25 -0.91 16 25 H 0.08 0.39 7.23 -51.93 -0.38 0.02 16 26 H 0.09 0.90 6.17 -51.93 -0.32 0.58 16 27 H 0.08 0.40 7.18 -51.93 -0.37 0.02 16 28 H 0.41 1.42 8.40 -40.82 -0.34 1.08 16 29 H 0.10 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 31 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 32 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.12 0.32 8.04 -51.93 -0.42 -0.09 16 37 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.11 0.26 5.82 -51.93 -0.30 -0.04 16 39 H 0.10 0.47 7.78 -51.93 -0.40 0.06 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -36.94 348.72 -6.26 -43.20 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -5.45 Total: -4.44 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.37 Total: 1.27 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 1.26 Total: -36.49 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.94 Total: -25.28 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.94 -6.26 -43.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.306 kcal (2) G-P(sol) polarization free energy of solvation -36.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds