Wall clock time and date at job start Tue Mar 31 2020 07:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.47193 * 109.47164 * 2 1 4 4 N 2.60799 * 109.47162 * 0.02562 * 2 1 3 5 5 N 1.46497 * 109.46907 * 120.00100 * 2 1 3 6 6 C 1.34768 * 120.00280 * 300.00001 * 5 2 1 7 7 O 1.21282 * 120.00211 * 359.97438 * 6 5 2 8 8 C 1.50705 * 120.00359 * 180.02562 * 6 5 2 9 9 O 1.45199 * 109.47328 * 180.02562 * 8 6 5 10 10 C 1.34225 * 116.99807 * 180.02562 * 9 8 6 11 11 O 1.20824 * 120.00143 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99835 * 179.97438 * 10 9 8 13 13 C 1.53000 * 109.47329 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47329 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99792 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99977 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99977 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99934 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46889 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46834 * 120.00039 * 18 16 14 21 21 H 1.48502 * 109.46784 * 239.99900 * 18 16 14 22 22 C 1.53003 * 109.46978 * 240.00133 * 2 1 3 23 23 C 1.53001 * 117.51964 * 356.28481 * 22 2 1 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 2 25 25 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47562 * 299.99765 * 1 2 3 27 27 H 1.09004 * 109.47159 * 59.99917 * 1 2 3 28 28 H 0.97003 * 119.99690 * 119.99861 * 5 2 1 29 29 H 1.08998 * 109.46809 * 299.99720 * 8 6 5 30 30 H 1.08992 * 109.47022 * 59.99631 * 8 6 5 31 31 H 1.09001 * 109.47278 * 300.00074 * 12 10 9 32 32 H 1.09004 * 109.47026 * 59.99899 * 12 10 9 33 33 H 1.08999 * 109.46941 * 299.99983 * 13 12 10 34 34 H 1.09004 * 109.46879 * 60.00139 * 13 12 10 35 35 H 0.97004 * 119.99575 * 179.97438 * 17 16 14 36 36 H 1.09002 * 115.54973 * 210.58264 * 22 2 1 37 37 H 1.09001 * 117.49733 * 214.97413 * 23 22 2 38 38 H 1.08995 * 117.49577 * 359.97438 * 23 22 2 39 39 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 40 40 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3877 0.0000 4 7 2.3993 2.4588 0.0011 5 7 2.0183 -0.6906 1.1961 6 6 1.6927 -0.2303 2.4202 7 8 0.9958 0.7561 2.5316 8 6 2.1955 -0.9404 3.6507 9 8 1.7109 -0.2563 4.8363 10 6 2.0723 -0.7659 6.0243 11 8 2.7700 -1.7512 6.0720 12 6 1.6077 -0.1092 7.2986 13 6 2.1551 -0.8825 8.4999 14 6 1.6911 -0.2254 9.7742 15 1 1.0677 0.6555 9.7316 16 6 2.0624 -0.7488 10.9946 17 7 2.8220 -1.8212 11.0465 18 14 1.4866 0.0654 12.5742 19 1 0.6490 1.2467 12.2454 20 1 0.6868 -0.9027 13.3669 21 1 2.6658 0.4989 13.3659 22 6 2.0400 -0.7212 -1.2493 23 6 0.9990 -1.3563 -2.1734 24 6 1.7329 -0.0857 -2.6068 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 2.5759 -1.4793 1.1071 29 1 1.8325 -1.9681 3.6508 30 1 3.2854 -0.9400 3.6505 31 1 1.9708 0.9181 7.3313 32 1 0.5182 -0.1107 7.3318 33 1 1.7916 -1.9096 8.4671 34 1 3.2447 -0.8814 8.4669 35 1 3.0835 -2.1891 11.9051 36 1 2.9949 -1.2351 -1.1386 37 1 1.2690 -2.2879 -2.6706 38 1 -0.0495 -1.2607 -1.8912 39 1 1.1673 0.8461 -2.6098 40 1 2.4859 -0.1814 -3.3891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:21 Heat of formation + Delta-G solvation = -93.187731 kcal Electronic energy + Delta-G solvation = -22550.202847 eV Core-core repulsion = 18944.435479 eV Total energy + Delta-G solvation = -3605.767368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90679 -41.25862 -39.34888 -37.55468 -37.15169 -35.65194 -35.53055 -33.20227 -32.02221 -29.59549 -27.80542 -26.52518 -24.17781 -23.50413 -22.33944 -21.63498 -21.49261 -19.28013 -19.08705 -18.44925 -18.11793 -17.90479 -17.33736 -16.85716 -16.47030 -16.33912 -15.67252 -15.36100 -15.06498 -14.95698 -14.48812 -14.28962 -14.13082 -13.90798 -13.81096 -13.75164 -13.21470 -13.12988 -12.99576 -12.86089 -12.49613 -12.28765 -12.09882 -12.02398 -11.86204 -11.76481 -11.51973 -11.43708 -11.28848 -11.27660 -10.92588 -10.61140 -10.58025 -8.20321 -6.33235 0.96457 1.17597 1.26039 1.43714 1.44011 1.57510 1.61130 1.63952 2.29604 2.44378 2.49270 3.10478 3.13629 3.45771 3.50930 3.76544 3.90837 4.00614 4.04047 4.09530 4.14463 4.32258 4.43962 4.45229 4.58575 4.74158 4.87214 4.87889 5.00125 5.06466 5.20184 5.24443 5.28556 5.34677 5.47487 5.56271 5.80975 6.13775 6.23712 6.39017 6.73333 6.85112 6.94912 7.36681 8.92308 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.042242 B = 0.002325 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.682781 B =12041.145365 C =12311.687549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.312 3.688 3 C 0.220 3.780 4 N -0.468 5.468 5 N -0.696 5.696 6 C 0.522 3.478 7 O -0.546 6.546 8 C 0.038 3.962 9 O -0.347 6.347 10 C 0.472 3.528 11 O -0.532 6.532 12 C -0.097 4.097 13 C 0.040 3.960 14 C -0.544 4.544 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.972 3.028 19 H -0.257 1.257 20 H -0.279 1.279 21 H -0.280 1.280 22 C -0.172 4.172 23 C -0.145 4.145 24 C -0.179 4.179 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.433 0.567 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.115 0.885 33 H -0.004 1.004 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.145 0.855 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 -2.896 -30.217 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.223 3.777 3 C -0.099 4.099 4 N -0.144 5.144 5 N -0.354 5.354 6 C 0.308 3.692 7 O -0.422 6.422 8 C -0.039 4.039 9 O -0.264 6.264 10 C 0.317 3.683 11 O -0.421 6.421 12 C -0.134 4.134 13 C 0.003 3.997 14 C -0.582 4.582 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.573 5.573 18 Si 0.796 3.204 19 H -0.181 1.181 20 H -0.204 1.204 21 H -0.206 1.206 22 C -0.192 4.192 23 C -0.181 4.181 24 C -0.217 4.217 25 H 0.130 0.870 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.274 0.726 29 H 0.147 0.853 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.014 0.986 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.670 -0.990 -30.026 30.265 hybrid contribution 0.411 -0.410 1.061 1.210 sum -3.259 -1.399 -28.964 29.181 Atomic orbital electron populations 1.22438 0.90269 1.05841 1.04075 1.17294 0.95418 0.78921 0.86091 1.30010 0.92355 0.95558 0.92010 1.81171 1.10109 1.14052 1.09074 1.45712 1.54674 1.32583 1.02456 1.20335 0.79802 0.84030 0.84999 1.90771 1.37727 1.26828 1.86851 1.22904 1.02081 0.97752 0.81162 1.86591 1.69778 1.55561 1.14439 1.24425 0.76488 0.82094 0.85324 1.90631 1.36726 1.26899 1.87845 1.21533 1.03861 1.01282 0.86709 1.18802 0.95097 0.94580 0.91261 1.21666 1.32048 1.13058 0.91455 0.90811 1.26052 0.95044 0.95530 1.03427 1.70149 1.37259 1.23414 1.26480 0.85293 0.78143 0.78689 0.78256 1.18068 1.20432 1.20599 1.22382 1.03438 1.05597 0.87739 1.23386 0.97943 0.97351 0.99430 1.23112 1.04426 0.98223 0.95890 0.87009 0.92367 0.89308 0.72602 0.85287 0.86500 0.87152 0.86735 0.98564 0.98850 0.92699 0.83723 0.85910 0.86684 0.89637 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 6.93 71.98 0.50 -1.47 16 2 C 0.31 3.93 0.87 1.80 0.00 3.93 16 3 C 0.22 4.89 12.16 89.44 1.09 5.98 16 4 N -0.47 -13.67 18.54 20.00 0.37 -13.30 16 5 N -0.70 -8.27 5.08 -431.22 -2.19 -10.46 16 6 C 0.52 11.23 7.32 87.66 0.64 11.87 16 7 O -0.55 -16.96 13.71 15.76 0.22 -16.74 16 8 C 0.04 0.84 5.94 71.24 0.42 1.26 16 9 O -0.35 -11.34 9.75 -45.01 -0.44 -11.78 16 10 C 0.47 18.04 7.96 71.24 0.57 18.61 16 11 O -0.53 -22.91 15.73 21.97 0.35 -22.57 16 12 C -0.10 -3.94 5.75 29.85 0.17 -3.77 16 13 C 0.04 2.14 4.26 29.85 0.13 2.26 16 14 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 15 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 17 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 18 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C -0.17 -0.90 5.32 -10.79 -0.06 -0.96 16 23 C -0.14 -0.26 9.50 30.59 0.29 0.03 16 24 C -0.18 -1.02 9.47 30.60 0.29 -0.73 16 25 H 0.11 0.70 7.23 -2.39 -0.02 0.68 16 26 H 0.06 1.14 6.17 -2.39 -0.01 1.12 16 27 H 0.09 0.80 7.18 -2.39 -0.02 0.78 16 28 H 0.43 1.55 8.40 -92.71 -0.78 0.77 16 29 H 0.13 2.22 8.13 -2.39 -0.02 2.20 16 30 H 0.12 2.25 8.13 -2.39 -0.02 2.23 16 31 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 32 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 33 H 0.00 -0.24 8.10 -2.39 -0.02 -0.26 16 34 H -0.01 -0.41 8.10 -2.39 -0.02 -0.43 16 35 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.15 0.19 8.04 -2.39 -0.02 0.18 16 37 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.12 0.12 5.82 -2.39 -0.01 0.11 16 39 H 0.09 0.72 7.78 -2.39 -0.02 0.71 16 40 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -83.29 348.72 5.64 -77.65 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 0.29 Total: 1.38 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 4.74 Total: 7.03 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.54 Total: -80.96 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: 0.12 Total: -51.09 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -83.29 5.64 -77.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.542 kcal (2) G-P(sol) polarization free energy of solvation -83.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds