Wall clock time and date at job start Tue Mar 31 2020 07:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46969 * 2 1 4 4 H 1.09001 * 109.46848 * 305.00319 * 3 2 1 5 5 O 1.42900 * 109.46654 * 65.00022 * 3 2 1 6 6 C 1.52992 * 109.47327 * 184.99626 * 3 2 1 7 7 N 1.46503 * 109.47173 * 180.02562 * 6 3 2 8 8 C 1.34773 * 119.99745 * 180.02562 * 7 6 3 9 9 O 1.21590 * 120.00666 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99842 * 179.97438 * 8 7 6 11 11 C 1.39943 * 120.00236 * 175.49083 * 10 8 7 12 12 C 1.38951 * 120.03840 * 214.85472 * 11 10 8 13 13 C 1.38163 * 120.06872 * 179.74442 * 12 11 10 14 14 C 1.38169 * 120.13406 * 0.55901 * 13 12 11 15 15 C 1.38908 * 120.07176 * 359.69814 * 14 13 12 16 16 O 1.35749 * 120.03259 * 180.02562 * 15 14 13 17 17 C 1.34827 * 117.00188 * 5.35635 * 16 15 14 18 18 H 1.08003 * 120.00213 * 354.97613 * 17 16 15 19 19 C 1.38650 * 120.00111 * 174.96685 * 17 16 15 20 20 N 1.31557 * 120.00003 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46908 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46693 * 120.00018 * 21 19 17 24 24 H 1.48491 * 109.47060 * 240.00092 * 21 19 17 25 25 C 1.38706 * 120.03163 * 35.13290 * 11 10 8 26 26 H 1.08997 * 109.47167 * 60.00109 * 1 2 3 27 27 H 1.08998 * 109.46535 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47435 * 299.99827 * 1 2 3 29 29 H 1.08996 * 109.47435 * 240.00173 * 2 1 3 30 30 H 1.08997 * 109.47167 * 119.99891 * 2 1 3 31 31 H 0.96696 * 114.00443 * 59.99844 * 5 3 2 32 32 H 1.08995 * 109.47676 * 300.00598 * 6 3 2 33 33 H 1.09005 * 109.46727 * 60.00224 * 6 3 2 34 34 H 0.96997 * 119.99625 * 0.02562 * 7 6 3 35 35 H 0.97001 * 119.99982 * 355.50052 * 10 8 7 36 36 H 1.07997 * 119.96624 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.93190 * 180.27473 * 13 12 11 38 38 H 1.07998 * 119.96103 * 179.71881 * 14 13 12 39 39 H 0.97006 * 120.00008 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06919 * 359.95476 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4445 -0.1256 7 7 4.0531 2.8258 -0.1250 8 6 5.3739 3.0736 -0.2271 9 8 6.1603 2.1508 -0.3201 10 7 5.8231 4.3443 -0.2270 11 6 7.1989 4.6001 -0.2377 12 6 7.7081 5.6957 0.4487 13 6 9.0668 5.9459 0.4429 14 6 9.9222 5.1147 -0.2546 15 6 9.4188 4.0209 -0.9472 16 8 10.2600 3.2044 -1.6319 17 6 11.5810 3.4446 -1.5090 18 1 11.9241 4.3049 -0.9534 19 6 12.4990 2.5871 -2.0956 20 7 12.0811 1.5393 -2.7726 21 14 14.3293 2.9194 -1.9248 22 1 14.5359 4.1508 -1.1210 23 1 14.9796 1.7702 -1.2451 24 1 14.9273 3.1008 -3.2718 25 6 8.0551 3.7636 -0.9385 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0140 1.6542 2.0139 32 1 3.9994 0.9055 0.7161 33 1 3.8531 0.9572 -1.0570 34 1 3.4257 3.5619 -0.0511 35 1 5.1928 5.0815 -0.2194 36 1 7.0415 6.3497 0.9912 37 1 9.4606 6.7954 0.9809 38 1 10.9833 5.3154 -0.2610 39 1 12.7235 0.9391 -3.1828 40 1 7.6614 2.9136 -1.4759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820001129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:01 Heat of formation + Delta-G solvation = -83.547650 kcal Electronic energy + Delta-G solvation = -22746.833269 eV Core-core repulsion = 19141.483926 eV Total energy + Delta-G solvation = -3605.349343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33378 -38.87608 -38.23505 -36.53005 -34.30804 -33.99315 -33.16646 -32.18799 -29.64288 -28.94963 -27.78158 -25.24531 -23.94943 -22.18922 -21.91486 -21.33645 -20.48893 -18.39223 -18.20594 -17.13829 -16.77863 -16.49467 -15.71561 -15.25292 -14.99050 -14.92382 -14.69939 -14.28139 -14.04581 -13.84619 -13.70199 -13.45811 -12.88469 -12.65436 -12.47270 -12.42138 -12.32541 -11.69918 -11.45757 -11.37710 -11.20284 -11.14685 -10.98862 -10.73559 -10.41679 -10.39840 -9.91220 -9.64666 -9.19375 -9.09184 -8.76749 -7.60194 -7.11851 -6.36863 -3.95859 2.15307 2.41104 2.69679 3.16723 3.18348 3.24141 3.39697 3.93936 4.02929 4.23803 4.33385 4.56939 4.63855 4.66915 4.98967 5.08440 5.17867 5.32521 5.38017 5.46923 5.55017 5.58688 5.68126 5.80783 5.87418 5.89624 6.15507 6.29032 6.35710 6.47714 6.60513 6.89938 7.09257 7.13150 7.21819 7.30726 7.40984 7.55612 7.88346 8.07966 8.10707 8.73697 9.08231 9.80717 10.81303 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.002890 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.491471 B = 9684.599963 C =10744.817908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.154 4.154 3 C 0.096 3.904 4 H 0.105 0.895 5 O -0.559 6.559 6 C 0.106 3.894 7 N -0.742 5.742 8 C 0.697 3.303 9 O -0.562 6.562 10 N -0.681 5.681 11 C 0.192 3.808 12 C -0.237 4.237 13 C -0.059 4.059 14 C -0.247 4.247 15 C 0.167 3.833 16 O -0.175 6.175 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.277 1.277 25 C -0.186 4.186 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.377 0.623 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.398 0.602 35 H 0.401 0.599 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.269 0.731 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.156 2.461 6.436 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.036 3.964 4 H 0.123 0.877 5 O -0.365 6.365 6 C -0.019 4.019 7 N -0.400 5.400 8 C 0.397 3.603 9 O -0.437 6.437 10 N -0.329 5.329 11 C 0.098 3.902 12 C -0.258 4.258 13 C -0.078 4.078 14 C -0.267 4.267 15 C 0.112 3.888 16 O -0.078 6.078 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.208 4.208 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.232 0.768 35 H 0.236 0.764 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.707 1.557 5.661 20.563 hybrid contribution 0.638 0.474 0.512 0.945 sum -19.070 2.031 6.173 20.147 Atomic orbital electron populations 1.21689 0.94769 1.01659 1.02409 1.22157 0.97307 0.96306 1.03501 1.22241 0.92141 0.93840 0.88150 0.87706 1.86561 1.76875 1.57363 1.15716 1.21928 0.93797 0.82797 1.03415 1.44932 1.05777 1.08768 1.80486 1.15989 0.82483 0.83499 0.78300 1.91027 1.54205 1.43114 1.55308 1.42450 1.06436 1.06410 1.77565 1.16953 0.80683 0.95929 0.96593 1.20244 0.95564 1.01832 1.08185 1.20481 0.92369 0.97764 0.97170 1.21173 1.00679 0.98771 1.06052 1.19145 0.90294 0.89549 0.89793 1.83992 1.17052 1.48642 1.58103 1.21392 0.78231 1.11565 1.35478 0.88960 1.25302 1.00176 0.94987 0.96176 1.70070 1.34963 1.12948 1.31671 0.85644 0.80779 0.78615 0.78338 1.19104 1.20197 1.20213 1.20197 0.90753 1.03792 1.06034 0.92688 0.92655 0.92046 0.90483 0.91158 0.77486 0.91228 0.90516 0.76759 0.76418 0.87461 0.87076 0.85498 0.92143 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.81 37.16 0.36 -0.49 16 2 C -0.15 -0.92 5.61 -26.73 -0.15 -1.07 16 3 C 0.10 0.66 3.05 -26.73 -0.08 0.58 16 4 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 5 O -0.56 -4.03 12.62 -35.23 -0.44 -4.47 16 6 C 0.11 1.03 5.34 -4.04 -0.02 1.01 16 7 N -0.74 -8.29 5.45 -65.23 -0.36 -8.64 16 8 C 0.70 11.35 8.41 -86.92 -0.73 10.62 16 9 O -0.56 -12.13 13.78 5.29 0.07 -12.06 16 10 N -0.68 -10.33 5.34 -14.24 -0.08 -10.40 16 11 C 0.19 3.73 6.30 -83.72 -0.53 3.20 16 12 C -0.24 -4.18 9.96 -39.35 -0.39 -4.57 16 13 C -0.06 -1.10 10.03 -39.63 -0.40 -1.50 16 14 C -0.25 -5.57 9.17 -39.36 -0.36 -5.93 16 15 C 0.17 4.31 6.64 -39.13 -0.26 4.05 16 16 O -0.17 -5.28 9.76 0.06 0.00 -5.28 16 17 C -0.39 -11.32 9.49 30.88 0.29 -11.02 16 18 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -26.22 13.67 55.48 0.76 -25.46 16 21 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.19 -4.44 8.64 -39.21 -0.34 -4.78 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.38 7.82 -51.93 -0.41 -0.03 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.38 1.82 9.05 45.56 0.41 2.23 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.38 8.36 -40.82 -0.34 3.03 16 35 H 0.40 4.34 8.84 -40.82 -0.36 3.98 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.13 2.84 5.63 -52.49 -0.30 2.54 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.14 3.48 6.22 -52.49 -0.33 3.15 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -36.14 341.97 -7.14 -43.28 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.53 Total: 10.72 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.70 Total: -8.92 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.33 Total: -44.51 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.37 Total: -21.80 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.14 -7.14 -43.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820001129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.263 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds