Wall clock time and date at job start Tue Mar 31 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46969 * 2 1 4 4 H 1.09001 * 109.46848 * 305.00319 * 3 2 1 5 5 O 1.42900 * 109.46654 * 65.00022 * 3 2 1 6 6 C 1.52992 * 109.47327 * 184.99626 * 3 2 1 7 7 N 1.46503 * 109.47173 * 180.02562 * 6 3 2 8 8 C 1.34773 * 119.99745 * 180.02562 * 7 6 3 9 9 O 1.21590 * 120.00666 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99842 * 179.97438 * 8 7 6 11 11 C 1.39943 * 120.00236 * 175.49083 * 10 8 7 12 12 C 1.38951 * 120.03840 * 214.85472 * 11 10 8 13 13 C 1.38163 * 120.06872 * 179.74442 * 12 11 10 14 14 C 1.38169 * 120.13406 * 0.55901 * 13 12 11 15 15 C 1.38908 * 120.07176 * 359.69814 * 14 13 12 16 16 O 1.35749 * 120.03259 * 180.02562 * 15 14 13 17 17 C 1.34827 * 117.00188 * 5.35635 * 16 15 14 18 18 H 1.08003 * 120.00213 * 354.97613 * 17 16 15 19 19 C 1.38650 * 120.00111 * 174.96685 * 17 16 15 20 20 N 1.31557 * 120.00003 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00218 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46908 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46693 * 120.00018 * 21 19 17 24 24 H 1.48491 * 109.47060 * 240.00092 * 21 19 17 25 25 C 1.38706 * 120.03163 * 35.13290 * 11 10 8 26 26 H 1.08997 * 109.47167 * 60.00109 * 1 2 3 27 27 H 1.08998 * 109.46535 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47435 * 299.99827 * 1 2 3 29 29 H 1.08996 * 109.47435 * 240.00173 * 2 1 3 30 30 H 1.08997 * 109.47167 * 119.99891 * 2 1 3 31 31 H 0.96696 * 114.00443 * 59.99844 * 5 3 2 32 32 H 1.08995 * 109.47676 * 300.00598 * 6 3 2 33 33 H 1.09005 * 109.46727 * 60.00224 * 6 3 2 34 34 H 0.96997 * 119.99625 * 0.02562 * 7 6 3 35 35 H 0.97001 * 119.99982 * 355.50052 * 10 8 7 36 36 H 1.07997 * 119.96624 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.93190 * 180.27473 * 13 12 11 38 38 H 1.07998 * 119.96103 * 179.71881 * 14 13 12 39 39 H 0.97006 * 120.00008 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.06919 * 359.95476 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4445 -0.1256 7 7 4.0531 2.8258 -0.1250 8 6 5.3739 3.0736 -0.2271 9 8 6.1603 2.1508 -0.3201 10 7 5.8231 4.3443 -0.2270 11 6 7.1989 4.6001 -0.2377 12 6 7.7081 5.6957 0.4487 13 6 9.0668 5.9459 0.4429 14 6 9.9222 5.1147 -0.2546 15 6 9.4188 4.0209 -0.9472 16 8 10.2600 3.2044 -1.6319 17 6 11.5810 3.4446 -1.5090 18 1 11.9241 4.3049 -0.9534 19 6 12.4990 2.5871 -2.0956 20 7 12.0811 1.5393 -2.7726 21 14 14.3293 2.9194 -1.9248 22 1 14.5359 4.1508 -1.1210 23 1 14.9796 1.7702 -1.2451 24 1 14.9273 3.1008 -3.2718 25 6 8.0551 3.7636 -0.9385 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0140 1.6542 2.0139 32 1 3.9994 0.9055 0.7161 33 1 3.8531 0.9572 -1.0570 34 1 3.4257 3.5619 -0.0511 35 1 5.1928 5.0815 -0.2194 36 1 7.0415 6.3497 0.9912 37 1 9.4606 6.7954 0.9809 38 1 10.9833 5.3154 -0.2610 39 1 12.7235 0.9391 -3.1828 40 1 7.6614 2.9136 -1.4759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820001129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:00 Heat of formation + Delta-G solvation = -113.421395 kcal Electronic energy + Delta-G solvation = -22748.128691 eV Core-core repulsion = 19141.483926 eV Total energy + Delta-G solvation = -3606.644765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.71606 -40.48421 -39.15966 -38.18559 -35.57176 -35.35162 -34.24640 -33.70839 -31.20856 -30.37030 -28.94274 -27.30983 -24.85945 -23.62556 -23.00299 -22.55658 -21.82617 -19.98864 -19.67863 -18.90633 -17.73532 -17.32777 -16.93530 -16.73675 -16.48441 -16.21744 -15.98131 -15.64721 -15.53068 -15.45811 -14.88630 -14.59689 -14.32017 -14.22357 -13.62265 -13.49354 -13.14373 -13.01250 -12.94001 -12.88976 -12.69083 -12.35723 -12.07806 -11.84678 -11.77276 -11.59621 -11.31426 -11.06005 -10.87835 -10.76852 -10.22983 -9.29096 -8.83815 -8.45549 -6.15080 0.48782 0.72768 1.34775 1.44466 1.51201 1.55166 2.03262 2.19208 2.84990 3.06877 3.19588 3.47967 3.61490 3.63322 3.96895 4.09683 4.17161 4.35749 4.38645 4.44708 4.55691 4.65178 4.72875 4.77130 4.84299 4.88911 5.06077 5.13061 5.13752 5.27634 5.35865 5.41119 5.42165 5.49521 5.66094 5.76478 5.96842 6.05312 6.23779 6.75798 6.98054 6.99205 7.47894 7.81871 8.78743 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.002890 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.491471 B = 9684.599963 C =10744.817908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.153 4.153 3 C 0.112 3.888 4 H 0.112 0.888 5 O -0.566 6.566 6 C 0.102 3.898 7 N -0.717 5.717 8 C 0.691 3.309 9 O -0.620 6.620 10 N -0.665 5.665 11 C 0.201 3.799 12 C -0.204 4.204 13 C -0.048 4.048 14 C -0.256 4.256 15 C 0.126 3.874 16 O -0.236 6.236 17 C -0.412 4.412 18 H 0.107 0.893 19 C -0.029 4.029 20 N -0.926 5.926 21 Si 1.025 2.975 22 H -0.246 1.246 23 H -0.270 1.270 24 H -0.268 1.268 25 C -0.214 4.214 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.388 0.612 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.416 0.584 35 H 0.427 0.573 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.756 5.544 8.732 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C 0.053 3.947 4 H 0.130 0.870 5 O -0.373 6.373 6 C -0.022 4.022 7 N -0.374 5.374 8 C 0.392 3.608 9 O -0.500 6.500 10 N -0.315 5.315 11 C 0.105 3.895 12 C -0.225 4.225 13 C -0.066 4.066 14 C -0.276 4.276 15 C 0.075 3.925 16 O -0.143 6.143 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.226 4.226 20 N -0.564 5.564 21 Si 0.843 3.157 22 H -0.169 1.169 23 H -0.195 1.195 24 H -0.193 1.193 25 C -0.236 4.236 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.238 0.762 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.254 0.746 35 H 0.267 0.733 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.438 4.718 7.999 23.363 hybrid contribution 0.772 -0.352 -0.052 0.850 sum -20.666 4.366 7.948 22.568 Atomic orbital electron populations 1.21667 0.94265 1.02008 1.02338 1.22147 0.97602 0.95612 1.03776 1.22096 0.89498 0.94624 0.88503 0.86995 1.86542 1.76857 1.57730 1.16167 1.22096 0.95979 0.81693 1.02461 1.44752 1.04063 1.10132 1.78446 1.16274 0.83549 0.83076 0.77936 1.91017 1.56167 1.44971 1.57798 1.42225 1.05277 1.07090 1.76875 1.17092 0.82036 0.95305 0.95030 1.20864 0.95988 1.00387 1.05255 1.21031 0.92362 0.97763 0.95475 1.21323 1.01344 0.98525 1.06415 1.19683 0.90717 0.90777 0.91356 1.83958 1.17939 1.51313 1.61106 1.21966 0.78520 1.12389 1.35967 0.87558 1.26733 1.05980 0.94432 0.95439 1.70239 1.37097 1.14927 1.34171 0.84453 0.73065 0.79243 0.78897 1.16944 1.19527 1.19252 1.20199 0.91048 1.04401 1.07908 0.92573 0.92161 0.92254 0.90546 0.90708 0.76218 0.92003 0.91875 0.74616 0.73324 0.81830 0.82145 0.85882 0.91930 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.81 71.98 0.71 -0.72 16 2 C -0.15 -1.61 5.61 30.60 0.17 -1.44 16 3 C 0.11 1.35 3.05 30.60 0.09 1.44 16 4 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 5 O -0.57 -6.73 12.62 -148.98 -1.88 -8.61 16 6 C 0.10 1.94 5.34 86.38 0.46 2.40 16 7 N -0.72 -14.93 5.45 -478.54 -2.61 -17.54 16 8 C 0.69 22.18 8.41 179.05 1.51 23.69 16 9 O -0.62 -28.02 13.78 -4.00 -0.06 -28.07 16 10 N -0.67 -18.63 5.34 -317.23 -1.70 -20.33 16 11 C 0.20 7.45 6.30 38.13 0.24 7.69 16 12 C -0.20 -6.19 9.96 22.42 0.22 -5.96 16 13 C -0.05 -1.60 10.03 22.24 0.22 -1.37 16 14 C -0.26 -11.49 9.17 22.41 0.21 -11.29 16 15 C 0.13 6.84 6.64 22.56 0.15 6.99 16 16 O -0.24 -15.43 9.76 -22.70 -0.22 -15.66 16 17 C -0.41 -25.26 9.49 67.92 0.64 -24.62 16 18 H 0.11 5.88 5.20 -2.91 -0.02 5.86 16 19 C -0.03 -1.75 5.49 84.83 0.47 -1.28 16 20 N -0.93 -60.11 13.67 21.61 0.30 -59.81 16 21 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 22 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 C -0.21 -10.66 8.64 22.51 0.19 -10.47 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.62 7.82 -2.39 -0.02 0.60 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.39 2.83 9.05 -74.06 -0.67 2.16 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.42 5.81 8.36 -92.71 -0.78 5.03 16 35 H 0.43 7.41 8.84 -92.71 -0.82 6.60 16 36 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 37 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 38 H 0.12 5.52 5.63 -2.91 -0.02 5.50 16 39 H 0.27 16.06 8.31 -92.70 -0.77 15.28 16 40 H 0.10 5.62 6.22 -2.91 -0.02 5.60 16 Total: -1.00 -88.20 341.97 -0.02 -88.22 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -1.17 Total: 30.17 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 5.28 Total: -14.94 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -4.01 Total: -97.68 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -2.16 Total: -52.33 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -88.20 -0.02 -88.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820001129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.198 kcal (2) G-P(sol) polarization free energy of solvation -88.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds