Wall clock time and date at job start Tue Mar 31 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35529 * 117.00051 * 2 1 4 4 C 1.38823 * 120.89223 * 0.24955 * 3 2 1 5 5 C 1.38711 * 119.19609 * 180.26788 * 4 3 2 6 6 O 1.35521 * 119.47148 * 179.75323 * 5 4 3 7 7 N 1.32586 * 121.05502 * 359.46911 * 5 4 3 8 8 C 1.31618 * 121.97964 * 0.26312 * 7 5 4 9 9 C 1.39544 * 120.66186 * 0.02562 * 8 7 5 10 10 C 1.47344 * 120.54838 * 180.02562 * 9 8 7 11 11 O 1.21620 * 119.99932 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00422 * 359.97438 * 10 9 8 13 13 C 1.46496 * 120.00195 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47221 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46936 * 300.00056 * 14 13 12 16 16 C 1.53000 * 109.46944 * 60.00106 * 14 13 12 17 17 C 1.50699 * 109.47263 * 180.02562 * 14 13 12 18 18 H 1.08005 * 120.00138 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00100 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99885 * 0.02562 * 19 17 14 21 21 Si 1.86796 * 119.99782 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47449 * 60.00610 * 21 19 17 23 23 H 1.48500 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47502 * 299.99867 * 21 19 17 25 25 H 1.09000 * 109.47767 * 60.00092 * 1 2 3 26 26 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47105 * 300.00183 * 1 2 3 28 28 H 1.08004 * 120.40164 * 0.02562 * 4 3 2 29 29 H 0.96700 * 114.00053 * 269.72646 * 6 5 4 30 30 H 1.07996 * 119.66482 * 179.97438 * 8 7 5 31 31 H 0.96997 * 119.99956 * 0.02562 * 12 10 9 32 32 H 1.08995 * 109.47586 * 300.00093 * 13 12 10 33 33 H 1.09001 * 109.46992 * 60.00386 * 13 12 10 34 34 H 1.09001 * 109.46647 * 60.00106 * 15 14 13 35 35 H 1.08994 * 109.47151 * 179.97438 * 15 14 13 36 36 H 1.09001 * 109.47346 * 299.99905 * 15 14 13 37 37 H 1.08995 * 109.47193 * 60.00566 * 16 14 13 38 38 H 1.09007 * 109.46565 * 180.02562 * 16 14 13 39 39 H 1.08996 * 109.46880 * 300.00067 * 16 14 13 40 40 H 0.96998 * 119.99756 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 0.0052 5 6 1.9724 3.6002 -0.0007 6 8 1.2576 4.7516 -0.0007 7 7 3.2972 3.6548 -0.0005 8 6 4.0396 2.5680 -0.0001 9 6 3.4499 1.3033 -0.0002 10 6 4.2835 0.0883 0.0009 11 8 3.7590 -1.0090 0.0012 12 7 5.6271 0.1929 0.0015 13 6 6.4559 -1.0151 0.0032 14 6 7.9340 -0.6197 0.0042 15 6 8.2413 0.2080 -1.2454 16 6 8.2390 0.2098 1.2531 17 6 8.7865 -1.8624 0.0053 18 1 8.3207 -2.8368 0.0048 19 6 10.1611 -1.7554 0.0058 20 7 10.7283 -0.5688 0.0059 21 14 11.2177 -3.2958 0.0064 22 1 10.9211 -4.1001 -1.2061 23 1 12.6523 -2.9119 0.0075 24 1 10.9201 -4.0999 1.2189 25 1 -0.3635 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2269 2.3513 0.0097 29 1 1.0502 5.0857 -0.8841 30 1 5.1160 2.6560 -0.0004 31 1 6.0455 1.0680 0.0016 32 1 6.2373 -1.6046 0.8936 33 1 6.2382 -1.6063 -0.8864 34 1 7.6247 1.1068 -1.2465 35 1 9.2941 0.4901 -1.2445 36 1 8.0239 -0.3830 -2.1352 37 1 8.0201 -0.3799 2.1433 38 1 9.2920 0.4919 1.2536 39 1 7.6224 1.1086 1.2519 40 1 11.6953 -0.4936 0.0066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:39 Heat of formation + Delta-G solvation = -76.295026 kcal Electronic energy + Delta-G solvation = -23697.706856 eV Core-core repulsion = 20092.672011 eV Total energy + Delta-G solvation = -3605.034845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16866 -39.07401 -38.84853 -36.99839 -36.27435 -33.32556 -31.82168 -31.29401 -30.32660 -27.83862 -25.74771 -25.71383 -25.12702 -23.92854 -23.05967 -20.55875 -19.55481 -18.84795 -17.91349 -17.52524 -17.02146 -16.19878 -15.79944 -15.51264 -15.08025 -14.81759 -14.71290 -14.66254 -14.48600 -13.48112 -13.26756 -12.93463 -12.85170 -12.58932 -12.22173 -12.16836 -11.83946 -11.74419 -11.36853 -11.18407 -10.83679 -10.72044 -10.37295 -10.21099 -10.06155 -9.62278 -9.46835 -9.40218 -9.22655 -9.05855 -8.78645 -8.43093 -8.28651 -6.00714 -4.10784 0.40619 1.00084 2.82331 2.89265 3.31406 3.32195 3.35748 3.38909 3.62001 3.78144 4.26434 4.40898 4.50268 4.66586 4.79629 4.84482 5.10231 5.18086 5.19254 5.26024 5.32001 5.57058 6.02326 6.24310 6.34262 6.51985 6.78429 6.83188 6.88488 6.95417 7.01825 7.03338 7.13426 7.36583 7.57031 7.61226 7.70675 8.02413 8.02616 8.16222 8.39618 8.67940 8.89594 9.54932 11.00669 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027270 B = 0.003490 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.516206 B = 8021.202233 C = 8848.800084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.268 6.268 3 C 0.234 3.766 4 C -0.290 4.290 5 C 0.363 3.637 6 O -0.481 6.481 7 N -0.528 5.528 8 C 0.195 3.805 9 C -0.224 4.224 10 C 0.555 3.445 11 O -0.529 6.529 12 N -0.712 5.712 13 C 0.133 3.867 14 C 0.055 3.945 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.150 0.850 29 H 0.405 0.595 30 H 0.173 0.827 31 H 0.395 0.605 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.006 0.994 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.300 8.408 -1.741 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.176 6.176 3 C 0.178 3.822 4 C -0.312 4.312 5 C 0.185 3.815 6 O -0.289 6.289 7 N -0.250 5.250 8 C 0.037 3.963 9 C -0.231 4.231 10 C 0.340 3.660 11 O -0.407 6.407 12 N -0.364 5.364 13 C 0.011 3.989 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.077 0.923 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.167 0.833 29 H 0.263 0.737 30 H 0.190 0.810 31 H 0.231 0.769 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.025 0.975 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.051 8.217 -1.142 19.866 hybrid contribution 0.041 -0.852 -0.454 0.967 sum -18.010 7.365 -1.596 19.523 Atomic orbital electron populations 1.23266 0.78173 1.04845 1.01452 1.86426 1.21199 1.24523 1.85424 1.19154 0.90918 0.84826 0.87304 1.22062 1.02091 0.91661 1.15429 1.18976 0.86641 0.84916 0.90930 1.84703 1.71264 1.38759 1.34134 1.67207 1.06381 1.33292 1.18120 1.22741 0.99963 0.84903 0.88689 1.20730 0.91554 0.96491 1.14318 1.17640 0.82542 0.87796 0.78015 1.90806 1.72919 1.27193 1.49783 1.46227 1.05081 1.11563 1.73532 1.21750 0.91702 0.84733 1.00690 1.18370 0.87917 0.95368 0.92888 1.21837 1.03247 0.96205 0.97583 1.21837 1.03246 0.96219 0.97593 1.20941 0.90820 0.91752 1.51006 0.92464 1.24871 0.97845 0.95954 0.94784 1.69791 1.10236 1.21918 1.50462 0.86633 0.79155 0.83395 0.78666 1.20298 1.21353 1.20298 0.92298 0.87451 0.92242 0.83253 0.73650 0.80974 0.76880 0.92518 0.92508 0.97529 0.89548 0.95382 0.95370 0.89547 0.97513 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.14 16 2 O -0.27 -3.71 8.71 -39.58 -0.34 -4.06 16 3 C 0.23 3.16 6.74 -38.36 -0.26 2.91 16 4 C -0.29 -3.09 9.02 -39.19 -0.35 -3.44 16 5 C 0.36 4.14 7.73 -17.05 -0.13 4.00 16 6 O -0.48 -4.34 13.54 -18.26 -0.25 -4.59 16 7 N -0.53 -6.92 10.36 -13.04 -0.14 -7.06 16 8 C 0.20 2.55 10.71 -17.16 -0.18 2.37 16 9 C -0.22 -3.34 5.90 -104.70 -0.62 -3.96 16 10 C 0.56 10.06 7.76 -12.56 -0.10 9.97 16 11 O -0.53 -11.38 15.28 -16.04 -0.25 -11.62 16 12 N -0.71 -12.73 4.91 -61.41 -0.30 -13.03 16 13 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 14 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 17 C -0.51 -13.18 8.01 -34.44 -0.28 -13.45 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.42 9.35 55.43 0.52 -22.90 16 21 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.06 0.36 7.72 -51.93 -0.40 -0.04 16 26 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.39 7.70 -51.92 -0.40 -0.01 16 28 H 0.15 1.14 6.45 -52.48 -0.34 0.80 16 29 H 0.40 1.49 9.06 45.56 0.41 1.90 16 30 H 0.17 1.93 6.41 -52.49 -0.34 1.59 16 31 H 0.40 6.25 4.21 -40.82 -0.17 6.08 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 35 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 40 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -32.16 329.21 -5.56 -37.72 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.23 Total: 5.01 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.51 Total: -0.06 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.08 Total: -42.99 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.84 Total: -20.27 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.16 -5.56 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.578 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds