Wall clock time and date at job start Tue Mar 31 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35529 * 117.00051 * 2 1 4 4 C 1.38823 * 120.89223 * 0.24955 * 3 2 1 5 5 C 1.38711 * 119.19609 * 180.26788 * 4 3 2 6 6 O 1.35521 * 119.47148 * 179.75323 * 5 4 3 7 7 N 1.32586 * 121.05502 * 359.46911 * 5 4 3 8 8 C 1.31618 * 121.97964 * 0.26312 * 7 5 4 9 9 C 1.39544 * 120.66186 * 0.02562 * 8 7 5 10 10 C 1.47344 * 120.54838 * 180.02562 * 9 8 7 11 11 O 1.21620 * 119.99932 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00422 * 359.97438 * 10 9 8 13 13 C 1.46496 * 120.00195 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47221 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46936 * 300.00056 * 14 13 12 16 16 C 1.53000 * 109.46944 * 60.00106 * 14 13 12 17 17 C 1.50699 * 109.47263 * 180.02562 * 14 13 12 18 18 H 1.08005 * 120.00138 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00100 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99885 * 0.02562 * 19 17 14 21 21 Si 1.86796 * 119.99782 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47449 * 60.00610 * 21 19 17 23 23 H 1.48500 * 109.46780 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47502 * 299.99867 * 21 19 17 25 25 H 1.09000 * 109.47767 * 60.00092 * 1 2 3 26 26 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47105 * 300.00183 * 1 2 3 28 28 H 1.08004 * 120.40164 * 0.02562 * 4 3 2 29 29 H 0.96700 * 114.00053 * 269.72646 * 6 5 4 30 30 H 1.07996 * 119.66482 * 179.97438 * 8 7 5 31 31 H 0.96997 * 119.99956 * 0.02562 * 12 10 9 32 32 H 1.08995 * 109.47586 * 300.00093 * 13 12 10 33 33 H 1.09001 * 109.46992 * 60.00386 * 13 12 10 34 34 H 1.09001 * 109.46647 * 60.00106 * 15 14 13 35 35 H 1.08994 * 109.47151 * 179.97438 * 15 14 13 36 36 H 1.09001 * 109.47346 * 299.99905 * 15 14 13 37 37 H 1.08995 * 109.47193 * 60.00566 * 16 14 13 38 38 H 1.09007 * 109.46565 * 180.02562 * 16 14 13 39 39 H 1.08996 * 109.46880 * 300.00067 * 16 14 13 40 40 H 0.96998 * 119.99756 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 0.0052 5 6 1.9724 3.6002 -0.0007 6 8 1.2576 4.7516 -0.0007 7 7 3.2972 3.6548 -0.0005 8 6 4.0396 2.5680 -0.0001 9 6 3.4499 1.3033 -0.0002 10 6 4.2835 0.0883 0.0009 11 8 3.7590 -1.0090 0.0012 12 7 5.6271 0.1929 0.0015 13 6 6.4559 -1.0151 0.0032 14 6 7.9340 -0.6197 0.0042 15 6 8.2413 0.2080 -1.2454 16 6 8.2390 0.2098 1.2531 17 6 8.7865 -1.8624 0.0053 18 1 8.3207 -2.8368 0.0048 19 6 10.1611 -1.7554 0.0058 20 7 10.7283 -0.5688 0.0059 21 14 11.2177 -3.2958 0.0064 22 1 10.9211 -4.1001 -1.2061 23 1 12.6523 -2.9119 0.0075 24 1 10.9201 -4.0999 1.2189 25 1 -0.3635 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2269 2.3513 0.0097 29 1 1.0502 5.0857 -0.8841 30 1 5.1160 2.6560 -0.0004 31 1 6.0455 1.0680 0.0016 32 1 6.2373 -1.6046 0.8936 33 1 6.2382 -1.6063 -0.8864 34 1 7.6247 1.1068 -1.2465 35 1 9.2941 0.4901 -1.2445 36 1 8.0239 -0.3830 -2.1352 37 1 8.0201 -0.3799 2.1433 38 1 9.2920 0.4919 1.2536 39 1 7.6224 1.1086 1.2519 40 1 11.6953 -0.4936 0.0066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822399858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:39 Heat of formation + Delta-G solvation = -101.112930 kcal Electronic energy + Delta-G solvation = -23698.783041 eV Core-core repulsion = 20092.672011 eV Total energy + Delta-G solvation = -3606.111030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14131 -40.40050 -39.77206 -38.09330 -37.77100 -35.01290 -33.02966 -32.63564 -31.55940 -28.57728 -27.52973 -27.45281 -26.85618 -25.07953 -23.99945 -21.92435 -20.65002 -20.31118 -19.15828 -18.52875 -18.00551 -17.66145 -17.07856 -16.59485 -16.47992 -16.14937 -16.11375 -15.90843 -15.44690 -14.88910 -14.67177 -14.59674 -14.04073 -13.93972 -13.69115 -13.16150 -13.07928 -12.96013 -12.65441 -12.60734 -12.54940 -12.47527 -12.21933 -12.11157 -11.45497 -11.35929 -11.08108 -10.70065 -10.54222 -10.37364 -10.27507 -10.14700 -9.81690 -7.99597 -6.15166 -0.55358 0.07842 1.45979 1.47159 1.53602 1.76658 2.03522 2.22294 2.46198 2.50722 2.68333 3.24013 3.40573 3.59903 3.65971 4.08355 4.19176 4.32791 4.34304 4.38675 4.45174 4.54398 4.64734 4.71395 4.75960 5.02625 5.08875 5.14523 5.17773 5.22930 5.37537 5.59116 5.69992 5.70571 6.09717 6.18415 6.24242 6.46116 6.51434 6.64006 6.75214 6.88532 7.27899 7.52271 8.99093 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027270 B = 0.003490 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.516206 B = 8021.202233 C = 8848.800084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.302 6.302 3 C 0.228 3.772 4 C -0.277 4.277 5 C 0.371 3.629 6 O -0.482 6.482 7 N -0.546 5.546 8 C 0.205 3.795 9 C -0.252 4.252 10 C 0.557 3.443 11 O -0.570 6.570 12 N -0.706 5.706 13 C 0.150 3.850 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.530 4.530 18 H 0.045 0.955 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.278 1.278 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.183 0.817 29 H 0.429 0.571 30 H 0.186 0.814 31 H 0.406 0.594 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.003 10.052 -1.886 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.211 6.211 3 C 0.172 3.828 4 C -0.299 4.299 5 C 0.194 3.806 6 O -0.294 6.294 7 N -0.269 5.269 8 C 0.046 3.954 9 C -0.258 4.258 10 C 0.345 3.655 11 O -0.451 6.451 12 N -0.358 5.358 13 C 0.026 3.974 14 C 0.050 3.950 15 C -0.179 4.179 16 C -0.180 4.180 17 C -0.568 4.568 18 H 0.063 0.937 19 C -0.171 4.171 20 N -0.536 5.536 21 Si 0.771 3.229 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.203 1.203 25 H 0.100 0.900 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.200 0.800 29 H 0.293 0.707 30 H 0.203 0.797 31 H 0.245 0.755 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.781 9.908 -1.307 22.162 hybrid contribution 0.423 -1.290 -0.418 1.421 sum -19.358 8.618 -1.725 21.259 Atomic orbital electron populations 1.23612 0.75500 1.06208 1.03373 1.86385 1.24150 1.25229 1.85302 1.19339 0.90696 0.85734 0.87075 1.22250 1.03475 0.90139 1.14016 1.19176 0.86345 0.85874 0.89216 1.84659 1.70637 1.37776 1.36312 1.67283 1.07426 1.33048 1.19106 1.22860 1.00624 0.84220 0.87677 1.20502 0.92093 0.95442 1.17793 1.18088 0.82379 0.88480 0.76552 1.90775 1.73549 1.29084 1.51650 1.46005 1.05108 1.10943 1.73748 1.21302 0.91207 0.85689 0.99163 1.18372 0.88425 0.94617 0.93590 1.21680 1.02319 0.97203 0.96714 1.21684 1.02317 0.97201 0.96756 1.21245 0.91704 0.92507 1.51383 0.93706 1.25432 0.98729 0.98190 0.94702 1.69897 1.10261 1.22924 1.50566 0.85835 0.77939 0.80730 0.78397 1.20275 1.20859 1.20340 0.90047 0.86608 0.90483 0.79995 0.70730 0.79691 0.75547 0.94182 0.94062 0.94311 0.91816 0.96245 0.96322 0.91799 0.94351 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.21 16 2 O -0.30 -8.08 8.71 -67.96 -0.59 -8.68 16 3 C 0.23 5.81 6.74 23.06 0.16 5.97 16 4 C -0.28 -5.05 9.02 22.52 0.20 -4.84 16 5 C 0.37 7.30 7.73 84.69 0.65 7.96 16 6 O -0.48 -6.91 13.54 -88.24 -1.20 -8.11 16 7 N -0.55 -12.99 10.36 -307.96 -3.19 -16.18 16 8 C 0.20 5.00 10.71 85.04 0.91 5.91 16 9 C -0.25 -7.26 5.90 -19.92 -0.12 -7.38 16 10 C 0.56 20.27 7.76 86.64 0.67 20.94 16 11 O -0.57 -25.07 15.28 16.27 0.25 -24.82 16 12 N -0.71 -25.01 4.91 -466.45 -2.29 -27.30 16 13 C 0.15 6.44 4.50 86.38 0.39 6.83 16 14 C 0.05 2.34 0.50 -52.92 -0.03 2.31 16 15 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 16 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 17 C -0.53 -28.05 8.01 25.60 0.21 -27.84 16 18 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 19 C 0.03 1.55 5.15 84.66 0.44 1.98 16 20 N -0.90 -47.74 9.35 21.45 0.20 -47.54 16 21 Si 0.94 42.65 29.54 68.60 2.03 44.67 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H 0.08 0.75 7.72 -2.39 -0.02 0.73 16 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 0.79 7.70 -2.38 -0.02 0.77 16 28 H 0.18 1.99 6.45 -2.91 -0.02 1.97 16 29 H 0.43 1.45 9.06 -74.06 -0.67 0.78 16 30 H 0.19 3.78 6.41 -2.91 -0.02 3.76 16 31 H 0.41 12.30 4.21 -92.71 -0.39 11.91 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 35 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 39 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 40 H 0.26 13.38 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -70.21 329.21 1.00 -69.21 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.03 Total: 15.28 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.76 Total: 3.46 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -5.28 Total: -91.02 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.54 Total: -41.60 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.21 1.00 -69.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.905 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds